Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99570 * 2 1 4 4 C 1.39003 * 110.99998 * 123.95623 * 2 1 3 5 5 N 1.32434 * 119.70329 * 297.24072 * 4 2 1 6 6 C 1.31938 * 121.61798 * 180.24629 * 5 4 2 7 7 C 1.38064 * 120.85823 * 359.77503 * 6 5 4 8 8 C 1.38838 * 119.32633 * 359.97438 * 7 6 5 9 9 C 1.38342 * 118.50649 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.44863 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46782 * 254.82943 * 10 9 8 12 12 C 1.47960 * 111.00043 * 170.00055 * 11 10 9 13 13 C 1.53934 * 86.18183 * 222.42272 * 12 11 10 14 14 O 1.42905 * 113.72953 * 269.25814 * 13 12 11 15 15 C 1.50694 * 113.73608 * 138.08164 * 13 12 11 16 16 H 1.08005 * 119.99957 * 4.99658 * 15 13 12 17 17 C 1.37885 * 120.00199 * 185.00163 * 15 13 12 18 18 N 1.31513 * 119.99560 * 12.99708 * 17 15 13 19 19 Si 1.86798 * 120.00126 * 192.99433 * 17 15 13 20 20 H 1.48499 * 109.47016 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47337 * 300.00026 * 19 17 15 22 22 H 1.48506 * 109.47007 * 59.99987 * 19 17 15 23 23 C 1.47963 * 110.99635 * 70.64375 * 11 10 9 24 24 H 1.08996 * 109.47533 * 296.04644 * 1 2 3 25 25 H 1.09001 * 109.47543 * 56.04595 * 1 2 3 26 26 H 1.08999 * 109.46982 * 176.04463 * 1 2 3 27 27 H 1.09000 * 109.46838 * 184.63418 * 3 2 1 28 28 H 1.08996 * 109.46910 * 304.63446 * 3 2 1 29 29 H 1.08999 * 109.46674 * 64.63910 * 3 2 1 30 30 H 1.07996 * 119.56937 * 179.75682 * 6 5 4 31 31 H 1.08002 * 120.33831 * 180.02562 * 7 6 5 32 32 H 1.08007 * 120.74658 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47140 * 134.83553 * 10 9 8 34 34 H 1.09001 * 109.47328 * 14.82894 * 10 9 8 35 35 H 1.08991 * 113.75637 * 108.10062 * 12 11 10 36 36 H 1.09005 * 113.85561 * 336.75043 * 12 11 10 37 37 H 0.96702 * 113.99676 * 171.31998 * 14 13 12 38 38 H 0.96998 * 120.00623 * 6.03960 * 18 17 15 39 39 H 1.08996 * 113.76318 * 23.25935 * 23 11 10 40 40 H 1.09004 * 113.75842 * 251.89649 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9672 -0.7248 1.0764 5 7 1.7108 -0.3241 2.3123 6 6 2.1685 -0.9806 3.3613 7 6 2.9329 -2.1197 3.2056 8 6 3.2202 -2.5762 1.9263 9 6 2.7266 -1.8671 0.8458 10 6 3.0122 -2.3231 -0.5619 11 7 4.0235 -1.4448 -1.1653 12 6 4.5047 -1.9957 -2.4515 13 6 5.9123 -1.5853 -1.9827 14 8 6.2896 -0.2661 -2.3819 15 6 6.9735 -2.6140 -2.2768 16 1 6.7254 -3.4987 -2.8445 17 6 8.2612 -2.4259 -1.8212 18 7 8.5124 -1.4967 -0.9251 19 14 9.6488 -3.4908 -2.4768 20 1 10.9260 -3.0912 -1.8331 21 1 9.3652 -4.9163 -2.1722 22 1 9.7586 -3.3112 -3.9469 23 6 5.3515 -1.6654 -0.5513 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0819 1.3437 -0.0830 28 1 1.5803 1.9200 -0.8455 29 1 1.7146 1.8684 0.9286 30 1 1.9425 -0.6220 4.3546 31 1 3.3029 -2.6507 4.0702 32 1 3.8157 -3.4650 1.7779 33 1 2.0960 -2.2802 -1.1507 34 1 3.3848 -3.3473 -0.5435 35 1 4.1542 -1.4443 -3.3238 36 1 4.3705 -3.0732 -2.5474 37 1 7.1126 0.0458 -1.9813 38 1 7.7821 -1.0034 -0.5200 39 1 5.4645 -2.6463 -0.0896 40 1 5.6778 -0.8501 0.0944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117582542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 41.382378 kcal Electronic energy + Delta-G solvation = -22303.502050 eV Core-core repulsion = 19119.970934 eV Total energy + Delta-G solvation = -3183.531116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56898 -39.00150 -36.65622 -34.89151 -32.70796 -32.19247 -30.83310 -28.02835 -27.44660 -25.58071 -25.18557 -24.76859 -23.06148 -21.63444 -20.94692 -18.79804 -17.82477 -17.04244 -16.62193 -15.47761 -15.35685 -15.03663 -14.66191 -14.44965 -14.07700 -13.84250 -13.76987 -13.20599 -13.14485 -12.85769 -12.56869 -12.12380 -12.05244 -11.92371 -11.67785 -11.51614 -11.25441 -10.94843 -10.78535 -10.65611 -10.25534 -10.14879 -9.67425 -9.56611 -9.12404 -8.75677 -8.63621 -8.40670 -8.25851 -7.72606 -6.53997 -4.32313 1.16921 1.36315 3.34741 3.39050 3.56896 3.78089 3.85809 4.39534 4.54456 4.76511 4.94909 4.98793 5.10734 5.14232 5.22828 5.42407 5.48954 5.55236 5.66954 5.67761 5.77601 5.81746 5.86079 5.95388 6.04157 6.12160 6.19191 6.21273 6.27558 6.43119 6.57463 6.59332 6.76098 6.98378 7.10445 7.12200 7.44922 7.85655 7.90717 8.02028 8.21415 8.59978 9.08297 9.38472 10.77201 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.005161 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.690485 B = 5423.664724 C = 5934.372628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.477 5.477 3 C 0.038 3.962 4 C 0.308 3.692 5 N -0.517 5.517 6 C 0.099 3.901 7 C -0.177 4.177 8 C -0.069 4.069 9 C -0.088 4.088 10 C 0.074 3.926 11 N -0.455 5.455 12 C 0.021 3.979 13 C 0.223 3.777 14 O -0.565 6.565 15 C -0.618 4.618 16 H 0.058 0.942 17 C 0.035 3.965 18 N -0.902 5.902 19 Si 1.064 2.936 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.285 1.285 23 C -0.020 4.020 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.370 0.630 38 H 0.270 0.730 39 H 0.060 0.940 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 -0.624 6.060 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.200 5.200 3 C -0.109 4.109 4 C 0.079 3.921 5 N -0.229 5.229 6 C -0.059 4.059 7 C -0.197 4.197 8 C -0.096 4.096 9 C -0.092 4.092 10 C -0.055 4.055 11 N -0.177 5.177 12 C -0.108 4.108 13 C 0.182 3.818 14 O -0.371 6.371 15 C -0.656 4.656 16 H 0.076 0.924 17 C -0.171 4.171 18 N -0.539 5.539 19 Si 0.891 3.109 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.211 1.211 23 C -0.150 4.150 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.168 0.832 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.218 0.782 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.196 0.302 5.463 13.367 hybrid contribution -0.663 -1.068 1.097 1.669 sum -12.859 -0.766 6.560 14.456 Atomic orbital electron populations 1.22377 0.86353 1.02031 1.01054 1.60082 1.07928 1.15302 1.36651 1.22306 1.01756 0.86531 1.00286 1.19630 0.93633 0.91896 0.86925 1.67685 1.22642 1.32711 0.99839 1.22411 0.94445 0.92067 0.96988 1.22054 1.00982 0.98693 0.97936 1.21560 0.96699 0.99419 0.91952 1.20530 0.97099 0.94977 0.96578 1.21358 0.98705 0.94508 0.90921 1.68681 1.03839 1.41953 1.03252 1.23970 0.95535 0.97699 0.93564 1.20025 0.91197 0.82088 0.88490 1.86238 1.45366 1.32718 1.72783 1.22362 0.96590 1.07511 1.39130 0.92397 1.25897 0.99724 0.97550 0.93885 1.70883 1.36155 1.22833 1.24041 0.83641 0.75819 0.75189 0.76266 1.20627 1.21352 1.21117 1.24796 0.90030 0.99250 1.00877 0.94581 0.90905 0.91910 0.90548 0.91140 0.94920 0.83249 0.84919 0.84782 0.89778 0.94331 0.90497 0.91611 0.78190 0.91811 0.92134 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.46 60.07 0.57 0.94 16 2 N -0.48 -7.39 4.25 -188.97 -0.80 -8.19 16 3 C 0.04 0.57 9.46 60.07 0.57 1.14 16 4 C 0.31 5.03 5.33 -155.01 -0.83 4.20 16 5 N -0.52 -8.05 9.52 -12.44 -0.12 -8.17 16 6 C 0.10 1.31 11.17 -17.57 -0.20 1.11 16 7 C -0.18 -2.23 10.10 -39.42 -0.40 -2.63 16 8 C -0.07 -1.01 9.80 -39.32 -0.39 -1.40 16 9 C -0.09 -1.44 4.95 -104.27 -0.52 -1.96 16 10 C 0.07 1.28 4.54 -4.97 -0.02 1.25 16 11 N -0.46 -9.29 6.25 -239.69 -1.50 -10.79 16 12 C 0.02 0.45 7.36 -2.77 -0.02 0.43 16 13 C 0.22 5.55 1.08 -90.84 -0.10 5.45 16 14 O -0.56 -14.78 13.45 -35.23 -0.47 -15.26 16 15 C -0.62 -16.61 8.57 -34.44 -0.30 -16.91 16 16 H 0.06 1.55 7.85 -52.48 -0.41 1.14 16 17 C 0.03 0.94 5.28 -17.82 -0.09 0.84 16 18 N -0.90 -25.22 12.81 55.43 0.71 -24.51 16 19 Si 1.06 23.87 29.92 -169.99 -5.09 18.79 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.02 -0.45 5.93 -2.77 -0.02 -0.47 16 24 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 25 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 29 H 0.03 0.48 7.84 -51.93 -0.41 0.07 16 30 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.13 1.79 8.04 -52.48 -0.42 1.37 16 33 H 0.08 1.40 7.98 -51.93 -0.41 0.98 16 34 H 0.04 0.65 7.54 -51.93 -0.39 0.26 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 37 H 0.37 9.61 6.91 45.56 0.31 9.93 16 38 H 0.27 7.46 5.49 -40.82 -0.22 7.24 16 39 H 0.06 1.38 7.73 -51.93 -0.40 0.98 16 40 H 0.06 1.51 7.80 -51.93 -0.41 1.11 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -29.98 330.14 -9.36 -39.33 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.33 Total: 11.80 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.73 Total: -7.99 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -1.71 Total: -51.65 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.47 Total: -15.26 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.09 Total: 18.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.98 -9.36 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117582542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.717 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds