Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99570 * 2 1 4 4 C 1.39003 * 110.99998 * 123.95623 * 2 1 3 5 5 N 1.32434 * 119.70329 * 297.24072 * 4 2 1 6 6 C 1.31938 * 121.61798 * 180.24629 * 5 4 2 7 7 C 1.38064 * 120.85823 * 359.77503 * 6 5 4 8 8 C 1.38838 * 119.32633 * 359.97438 * 7 6 5 9 9 C 1.38342 * 118.50649 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.44863 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46782 * 254.82943 * 10 9 8 12 12 C 1.47960 * 111.00043 * 170.00055 * 11 10 9 13 13 C 1.53934 * 86.18183 * 222.42272 * 12 11 10 14 14 O 1.42905 * 113.72953 * 269.25814 * 13 12 11 15 15 C 1.50694 * 113.73608 * 138.08164 * 13 12 11 16 16 H 1.08005 * 119.99957 * 4.99658 * 15 13 12 17 17 C 1.37885 * 120.00199 * 185.00163 * 15 13 12 18 18 N 1.31513 * 119.99560 * 12.99708 * 17 15 13 19 19 Si 1.86798 * 120.00126 * 192.99433 * 17 15 13 20 20 H 1.48499 * 109.47016 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47337 * 300.00026 * 19 17 15 22 22 H 1.48506 * 109.47007 * 59.99987 * 19 17 15 23 23 C 1.47963 * 110.99635 * 70.64375 * 11 10 9 24 24 H 1.08996 * 109.47533 * 296.04644 * 1 2 3 25 25 H 1.09001 * 109.47543 * 56.04595 * 1 2 3 26 26 H 1.08999 * 109.46982 * 176.04463 * 1 2 3 27 27 H 1.09000 * 109.46838 * 184.63418 * 3 2 1 28 28 H 1.08996 * 109.46910 * 304.63446 * 3 2 1 29 29 H 1.08999 * 109.46674 * 64.63910 * 3 2 1 30 30 H 1.07996 * 119.56937 * 179.75682 * 6 5 4 31 31 H 1.08002 * 120.33831 * 180.02562 * 7 6 5 32 32 H 1.08007 * 120.74658 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47140 * 134.83553 * 10 9 8 34 34 H 1.09001 * 109.47328 * 14.82894 * 10 9 8 35 35 H 1.08991 * 113.75637 * 108.10062 * 12 11 10 36 36 H 1.09005 * 113.85561 * 336.75043 * 12 11 10 37 37 H 0.96702 * 113.99676 * 171.31998 * 14 13 12 38 38 H 0.96998 * 120.00623 * 6.03960 * 18 17 15 39 39 H 1.08996 * 113.76318 * 23.25935 * 23 11 10 40 40 H 1.09004 * 113.75842 * 251.89649 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9672 -0.7248 1.0764 5 7 1.7108 -0.3241 2.3123 6 6 2.1685 -0.9806 3.3613 7 6 2.9329 -2.1197 3.2056 8 6 3.2202 -2.5762 1.9263 9 6 2.7266 -1.8671 0.8458 10 6 3.0122 -2.3231 -0.5619 11 7 4.0235 -1.4448 -1.1653 12 6 4.5047 -1.9957 -2.4515 13 6 5.9123 -1.5853 -1.9827 14 8 6.2896 -0.2661 -2.3819 15 6 6.9735 -2.6140 -2.2768 16 1 6.7254 -3.4987 -2.8445 17 6 8.2612 -2.4259 -1.8212 18 7 8.5124 -1.4967 -0.9251 19 14 9.6488 -3.4908 -2.4768 20 1 10.9260 -3.0912 -1.8331 21 1 9.3652 -4.9163 -2.1722 22 1 9.7586 -3.3112 -3.9469 23 6 5.3515 -1.6654 -0.5513 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0819 1.3437 -0.0830 28 1 1.5803 1.9200 -0.8455 29 1 1.7146 1.8684 0.9286 30 1 1.9425 -0.6220 4.3546 31 1 3.3029 -2.6507 4.0702 32 1 3.8157 -3.4650 1.7779 33 1 2.0960 -2.2802 -1.1507 34 1 3.3848 -3.3473 -0.5435 35 1 4.1542 -1.4443 -3.3238 36 1 4.3705 -3.0732 -2.5474 37 1 7.1126 0.0458 -1.9813 38 1 7.7821 -1.0034 -0.5200 39 1 5.4645 -2.6463 -0.0896 40 1 5.6778 -0.8501 0.0944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117582542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 18.754431 kcal Electronic energy + Delta-G solvation = -22304.483272 eV Core-core repulsion = 19119.970934 eV Total energy + Delta-G solvation = -3184.512337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77640 -40.69489 -37.75495 -36.72396 -34.26250 -34.03681 -31.98766 -29.57803 -28.53682 -27.39481 -26.86228 -25.96694 -24.60937 -22.87766 -22.23406 -20.65745 -19.80763 -18.14294 -17.78935 -17.17413 -16.65628 -16.56233 -16.20117 -15.98879 -15.57015 -15.48753 -14.99126 -14.70702 -14.31816 -14.24110 -13.97461 -13.71378 -13.45997 -13.18071 -13.07240 -12.94216 -12.77915 -12.66851 -12.53107 -12.26420 -11.99975 -11.93187 -11.07860 -10.80440 -10.70068 -10.66166 -10.21606 -9.75044 -9.54821 -9.50879 -8.65139 -6.45343 0.06856 0.24448 1.55799 1.61111 1.82183 2.53638 2.65806 2.77043 2.95141 3.14995 3.46985 3.72957 3.86010 3.93233 4.05559 4.12339 4.16393 4.23997 4.35857 4.40467 4.43246 4.54401 4.58163 4.61208 4.65787 4.75947 4.84906 4.90014 4.90895 4.96471 5.13692 5.17398 5.22279 5.45696 5.53563 5.83249 5.88827 6.08666 6.22425 6.33552 6.47541 6.91500 7.02946 7.32420 8.65630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.005161 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.690485 B = 5423.664724 C = 5934.372628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.492 5.492 3 C 0.047 3.953 4 C 0.294 3.706 5 N -0.534 5.534 6 C 0.097 3.903 7 C -0.169 4.169 8 C -0.079 4.079 9 C -0.113 4.113 10 C 0.080 3.920 11 N -0.453 5.453 12 C 0.029 3.971 13 C 0.198 3.802 14 O -0.574 6.574 15 C -0.634 4.634 16 H 0.055 0.945 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 1.110 2.890 20 H -0.284 1.284 21 H -0.269 1.269 22 H -0.276 1.276 23 C 0.000 4.000 24 H 0.033 0.967 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.184 0.816 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.366 0.634 38 H 0.262 0.738 39 H 0.056 0.944 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 -1.603 6.820 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.215 5.215 3 C -0.100 4.100 4 C 0.065 3.935 5 N -0.246 5.246 6 C -0.061 4.061 7 C -0.188 4.188 8 C -0.105 4.105 9 C -0.117 4.117 10 C -0.048 4.048 11 N -0.175 5.175 12 C -0.100 4.100 13 C 0.157 3.843 14 O -0.380 6.380 15 C -0.672 4.672 16 H 0.073 0.927 17 C -0.208 4.208 18 N -0.559 5.559 19 Si 0.932 3.068 20 H -0.209 1.209 21 H -0.194 1.194 22 H -0.201 1.201 23 C -0.129 4.129 24 H 0.052 0.948 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.201 0.799 31 H 0.185 0.815 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.213 0.787 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.971 -0.679 6.217 14.401 hybrid contribution -0.497 -0.751 0.931 1.295 sum -13.468 -1.430 7.148 15.314 Atomic orbital electron populations 1.22397 0.84687 1.02564 1.01677 1.60077 1.09467 1.15108 1.36842 1.22185 0.99809 0.86954 1.01078 1.19756 0.94065 0.92115 0.87524 1.67731 1.23404 1.33411 1.00079 1.23064 0.93428 0.91819 0.97783 1.22420 0.99840 0.98341 0.98222 1.21804 0.96588 0.99648 0.92501 1.20526 0.98704 0.96123 0.96349 1.21303 0.97711 0.93989 0.91817 1.68612 1.03369 1.43022 1.02480 1.23909 0.93465 0.98386 0.94200 1.20363 0.92328 0.81195 0.90392 1.86224 1.45170 1.33551 1.73099 1.22638 0.97613 1.07910 1.39039 0.92720 1.27156 1.02197 0.97997 0.93460 1.70974 1.35894 1.23843 1.25142 0.83030 0.73072 0.74641 0.76087 1.20897 1.19448 1.20149 1.24425 0.91239 0.98119 0.99147 0.94805 0.89191 0.91581 0.93657 0.89391 0.94852 0.79946 0.81476 0.83993 0.89104 0.93875 0.90462 0.90415 0.78654 0.92714 0.92535 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.46 127.69 1.21 2.01 16 2 N -0.49 -14.90 4.25 -751.78 -3.20 -18.10 16 3 C 0.05 1.40 9.46 127.69 1.21 2.61 16 4 C 0.29 9.36 5.33 133.04 0.71 10.07 16 5 N -0.53 -15.90 9.52 -193.27 -1.84 -17.74 16 6 C 0.10 2.32 11.17 84.64 0.95 3.26 16 7 C -0.17 -3.81 10.10 22.37 0.23 -3.58 16 8 C -0.08 -2.17 9.80 22.44 0.22 -1.95 16 9 C -0.11 -3.62 4.95 -19.63 -0.10 -3.72 16 10 C 0.08 2.72 4.54 85.56 0.39 3.11 16 11 N -0.45 -18.46 6.25 -915.44 -5.72 -24.18 16 12 C 0.03 1.25 7.36 86.41 0.64 1.88 16 13 C 0.20 9.94 1.08 -10.90 -0.01 9.92 16 14 O -0.57 -30.72 13.45 -148.98 -2.00 -32.72 16 15 C -0.63 -34.15 8.57 25.60 0.22 -33.93 16 16 H 0.05 2.91 7.85 -2.91 -0.02 2.88 16 17 C -0.01 -0.40 5.28 84.66 0.45 0.05 16 18 N -0.92 -51.99 12.81 21.45 0.27 -51.72 16 19 Si 1.11 47.55 29.92 68.60 2.05 49.60 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 23 C 0.00 0.02 5.93 86.40 0.51 0.53 16 24 H 0.03 0.81 7.89 -2.39 -0.02 0.79 16 25 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 2.24 8.11 -2.39 -0.02 2.22 16 29 H 0.03 0.96 7.84 -2.39 -0.02 0.94 16 30 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.14 3.59 8.04 -2.91 -0.02 3.57 16 33 H 0.09 2.93 7.98 -2.39 -0.02 2.91 16 34 H 0.04 1.42 7.54 -2.39 -0.02 1.40 16 35 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.12 7.75 -2.38 -0.02 3.10 16 37 H 0.37 19.67 6.91 -74.06 -0.51 19.15 16 38 H 0.26 14.83 5.49 -92.71 -0.51 14.32 16 39 H 0.06 2.60 7.73 -2.39 -0.02 2.59 16 40 H 0.04 2.14 7.80 -2.38 -0.02 2.13 16 Total: -1.00 -64.02 330.14 -3.05 -67.07 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.78 Total: 37.53 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 6.61 Total: -9.74 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -10.49 Total: -111.74 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -2.00 Total: -32.72 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.05 Total: 49.60 kcal Total: -64.02 -3.05 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117582542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.821 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds