Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47216 * 269.95379 * 7 6 5 9 9 C 1.53000 * 109.47378 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47335 * 180.02562 * 9 8 7 11 11 C 1.46895 * 110.99853 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.46827 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47053 * 304.99694 * 12 11 10 14 14 C 1.47191 * 109.47274 * 65.00095 * 12 11 10 15 15 N 8.81155 * 99.40194 * 219.28455 * 2 1 3 16 16 C 1.53008 * 109.47209 * 185.00203 * 12 11 10 17 17 C 1.50693 * 109.47210 * 174.99847 * 16 12 11 18 18 H 1.08007 * 120.00179 * 0.02562 * 17 16 12 19 19 C 1.37876 * 120.00055 * 179.97438 * 17 16 12 20 20 N 1.31511 * 120.00178 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00009 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47133 * 89.99331 * 21 19 17 23 23 H 1.48494 * 109.47272 * 209.99968 * 21 19 17 24 24 H 1.48508 * 109.46997 * 329.99424 * 21 19 17 25 25 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 26 26 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 27 27 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 28 28 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 30 30 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 31 31 H 1.08997 * 109.47677 * 300.00361 * 8 7 6 32 32 H 1.09004 * 109.46884 * 59.99951 * 8 7 6 33 33 H 1.09004 * 109.46948 * 300.00099 * 9 8 7 34 34 H 1.09004 * 109.47160 * 60.00112 * 9 8 7 35 35 H 1.00900 * 110.99674 * 56.04151 * 10 9 8 36 36 H 1.08997 * 109.47571 * 299.99745 * 11 10 9 37 37 H 1.09006 * 109.46824 * 60.00116 * 11 10 9 38 38 H 1.08993 * 109.46860 * 295.00498 * 16 12 11 39 39 H 1.09000 * 109.46655 * 54.99724 * 16 12 11 40 40 H 0.97002 * 120.00457 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 6 1.7006 -3.0070 -1.4581 9 6 1.2610 -4.4724 -1.4656 10 7 1.1203 -4.9344 -2.8530 11 6 0.6990 -6.3409 -2.8993 12 6 0.5630 -6.7847 -4.3572 13 1 -0.1150 -6.1105 -4.8805 14 6 1.8842 -6.7525 -5.0052 15 7 2.9044 -6.7286 -5.5043 16 6 0.0051 -8.2086 -4.4069 17 6 -0.2443 -8.6006 -5.8404 18 1 -0.0263 -7.9041 -6.6366 19 6 -0.7497 -9.8489 -6.1358 20 7 -0.9679 -10.1909 -7.3868 21 14 -1.1261 -11.0540 -4.7590 22 1 -2.5280 -10.8666 -4.3066 23 1 -0.9469 -12.4426 -5.2538 24 1 -0.2023 -10.8107 -3.6220 25 1 -0.3634 -0.0056 1.0276 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.9701 2.1169 -0.0004 29 1 2.5963 -3.1320 0.4970 30 1 0.8911 -2.6214 0.5006 31 1 0.9521 -2.4009 -1.9685 32 1 2.6572 -2.9115 -1.9720 33 1 2.0093 -5.0788 -0.9552 34 1 0.3043 -4.5674 -0.9519 35 1 1.9766 -4.7966 -3.3686 36 1 1.4434 -6.9599 -2.3987 37 1 -0.2617 -6.4491 -2.3958 38 1 0.7243 -8.8963 -3.9620 39 1 -0.9310 -8.2517 -3.8503 40 1 -1.3238 -11.0689 -7.5947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120596028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = 65.111553 kcal Electronic energy + Delta-G solvation = -20045.204501 eV Core-core repulsion = 16894.995110 eV Total energy + Delta-G solvation = -3150.209391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.05844 -39.02470 -37.27330 -36.06760 -35.61386 -34.72546 -33.29329 -31.03695 -28.92455 -28.35790 -26.41055 -23.83553 -23.40230 -23.30883 -22.46839 -21.48569 -18.92622 -18.29414 -17.96402 -17.31392 -17.00998 -16.50964 -16.22569 -15.83490 -15.45373 -15.10427 -14.88533 -14.50909 -14.38158 -14.23852 -14.03311 -13.83773 -13.49636 -13.19070 -13.10849 -13.05914 -12.61095 -12.54873 -12.42675 -12.24220 -12.10440 -11.74221 -11.63637 -11.49692 -11.27389 -11.25836 -11.05512 -10.71807 -10.21571 -9.35411 -8.23573 -6.29453 0.88144 1.43877 1.47318 1.57378 1.67028 1.88210 1.94105 1.95483 2.42485 3.10520 3.12671 3.24699 3.44050 3.75295 3.93009 3.98757 4.12556 4.24204 4.32476 4.35622 4.44884 4.47948 4.61232 4.68794 4.74246 4.78968 4.83727 4.91933 4.96926 5.00175 5.22412 5.24959 5.26184 5.30693 5.48961 5.65151 6.00459 6.10131 6.27497 6.31960 6.75001 6.81292 7.35124 7.75889 8.93508 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.002565 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.336272 B =10913.673582 C =11205.286415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.473 5.473 3 C 0.156 3.844 4 N -0.357 5.357 5 N -0.352 5.352 6 C 0.179 3.821 7 C -0.026 4.026 8 C -0.103 4.103 9 C 0.062 3.938 10 N -0.699 5.699 11 C 0.076 3.924 12 C 0.022 3.978 13 H 0.120 0.880 14 C 0.248 3.752 15 N -0.510 5.510 16 C -0.002 4.002 17 C -0.532 4.532 18 H 0.026 0.974 19 C 0.000 4.000 20 N -0.956 5.956 21 Si 0.951 3.049 22 H -0.255 1.255 23 H -0.298 1.298 24 H -0.236 1.236 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.258 0.742 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.102 0.898 35 H 0.330 0.670 36 H 0.040 0.960 37 H 0.121 0.879 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 19.754 22.806 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.163 5.163 3 C -0.132 4.132 4 N -0.195 5.195 5 N -0.191 5.191 6 C -0.090 4.090 7 C -0.066 4.066 8 C -0.142 4.142 9 C -0.067 4.067 10 N -0.329 5.329 11 C -0.054 4.054 12 C 0.000 4.000 13 H 0.138 0.862 14 C -0.068 4.068 15 N -0.188 5.188 16 C -0.041 4.041 17 C -0.570 4.570 18 H 0.045 0.955 19 C -0.196 4.196 20 N -0.597 5.597 21 Si 0.774 3.226 22 H -0.179 1.179 23 H -0.224 1.224 24 H -0.159 1.159 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.274 0.726 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.120 0.880 35 H 0.147 0.853 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.616 19.943 21.908 29.741 hybrid contribution -0.677 -1.043 -0.232 1.265 sum -3.293 18.899 21.677 28.947 Atomic orbital electron populations 1.22559 0.72217 1.07261 1.05957 1.46489 1.10914 1.05668 1.53227 1.27197 0.86367 0.96726 1.02939 1.74129 1.21024 1.03607 1.20755 1.74155 1.19808 1.03908 1.21260 1.25308 0.86903 0.93930 1.02877 1.20100 1.04266 0.83805 0.98396 1.21402 1.01334 0.96402 0.95048 1.22004 1.02147 0.93966 0.88588 1.60567 1.38183 1.19577 1.14586 1.22017 1.03181 0.87733 0.92457 1.19168 0.84758 1.00483 0.95575 0.86249 1.29828 0.94677 0.90366 0.91961 1.81063 1.15087 1.11706 1.10926 1.19586 0.97998 0.91104 0.95441 1.21429 1.42489 1.00111 0.92975 0.95513 1.26091 0.94883 1.00500 0.98173 1.70097 1.46919 1.21908 1.20746 0.85647 0.80438 0.76798 0.79718 1.17901 1.22446 1.15906 0.88017 0.87740 0.86740 0.72626 0.88486 0.86255 0.90717 0.93876 0.94619 0.87978 0.85285 0.94193 0.86111 0.95572 0.91488 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.07 10.89 127.77 1.39 1.46 16 2 N -0.47 -5.61 3.15 -542.07 -1.71 -7.32 16 3 C 0.16 2.31 12.74 180.11 2.30 4.60 16 4 N -0.36 -9.20 12.21 -59.99 -0.73 -9.93 16 5 N -0.35 -9.59 12.21 -50.16 -0.61 -10.20 16 6 C 0.18 3.23 7.28 137.98 1.01 4.23 16 7 C -0.03 -0.29 5.39 29.85 0.16 -0.13 16 8 C -0.10 -1.44 5.46 30.59 0.17 -1.28 16 9 C 0.06 0.86 5.69 86.30 0.49 1.35 16 10 N -0.70 -14.33 6.50 -513.88 -3.34 -17.67 16 11 C 0.08 1.69 5.12 86.30 0.44 2.13 16 12 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 13 H 0.12 3.80 8.14 -2.38 -0.02 3.78 16 14 C 0.25 9.74 12.98 89.44 1.16 10.90 16 15 N -0.51 -22.58 18.54 20.00 0.37 -22.21 16 16 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 17 C -0.53 -28.47 9.15 25.60 0.23 -28.24 16 18 H 0.03 1.63 7.84 -2.91 -0.02 1.61 16 19 C 0.00 0.00 5.47 84.66 0.46 0.46 16 20 N -0.96 -59.08 13.96 21.45 0.30 -58.78 16 21 Si 0.95 40.79 27.47 68.60 1.88 42.68 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 25 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.10 -0.01 7.81 -2.39 -0.02 -0.03 16 27 H 0.11 -0.31 8.14 -2.38 -0.02 -0.33 16 28 H 0.26 1.09 8.06 -2.91 -0.02 1.06 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 0.53 7.86 -2.39 -0.02 0.51 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.33 7.99 7.81 -89.69 -0.70 7.29 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.03 1.03 7.20 -2.39 -0.02 1.01 16 39 H 0.07 2.26 7.57 -2.39 -0.02 2.24 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -83.01 344.74 4.33 -78.69 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.28 Total: 8.56 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 7.88 Total: -3.82 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -5.72 Total: -126.11 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.68 kcal Total: -83.01 4.33 -78.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120596028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.797 kcal (2) G-P(sol) polarization free energy of solvation -83.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds