Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36883 * 126.39842 * 2 1 4 4 C 1.34673 * 106.81395 * 180.02562 * 3 2 1 5 5 N 1.34125 * 108.02158 * 359.78105 * 4 3 2 6 6 C 1.30497 * 109.25673 * 0.36743 * 5 4 3 7 7 C 1.50707 * 125.65041 * 179.89732 * 6 5 4 8 8 C 1.52994 * 109.47009 * 269.69319 * 7 6 5 9 9 C 1.50698 * 109.47153 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00330 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.08992 * 109.47228 * 269.98081 * 1 2 3 25 25 H 1.08999 * 109.46782 * 29.97819 * 1 2 3 26 26 H 1.08994 * 109.47289 * 149.97746 * 1 2 3 27 27 H 1.07994 * 126.59440 * 0.05220 * 3 2 1 28 28 H 1.07993 * 125.98817 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47080 * 149.69156 * 7 6 5 30 30 H 1.09002 * 109.46869 * 29.69264 * 7 6 5 31 31 H 1.09005 * 109.47336 * 59.99445 * 8 7 6 32 32 H 1.09009 * 109.47164 * 300.00067 * 8 7 6 33 33 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 35 35 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 36 36 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 37 37 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 38 38 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 39 39 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 40 40 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0006 5 7 3.5095 -0.6904 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8017 -2.5207 0.0000 8 6 1.6432 -3.0060 -1.4422 9 6 1.1780 -4.4394 -1.4416 10 8 0.9920 -5.0162 -0.3911 11 7 0.9697 -5.0808 -2.6086 12 6 0.5169 -6.4740 -2.6080 13 6 0.4738 -6.9968 -4.0452 14 6 -0.5328 -6.3323 -4.9486 15 1 -0.2298 -5.5139 -5.5850 16 6 -1.8391 -6.7729 -4.9672 17 7 -2.1868 -7.8292 -4.2652 18 14 -3.1151 -5.8693 -5.9894 19 1 -2.7096 -5.8891 -7.4178 20 1 -4.4330 -6.5371 -5.8392 21 1 -3.2174 -4.4630 -5.5233 22 6 1.7937 -7.4512 -4.6716 23 6 0.7432 -8.4871 -4.2633 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5141 27 1 1.9614 2.1345 0.0008 28 1 4.4369 1.2609 -0.0003 29 1 0.8435 -2.5919 0.5148 30 1 2.5368 -3.1406 0.5133 31 1 2.6014 -2.9347 -1.9570 32 1 0.9081 -2.3860 -1.9555 33 1 1.1188 -4.6196 -3.4488 34 1 -0.4796 -6.5321 -2.1702 35 1 1.2074 -7.0802 -2.0215 36 1 -3.0876 -8.1824 -4.3344 37 1 1.9340 -7.2695 -5.7372 38 1 2.6927 -7.3781 -4.0596 39 1 0.9517 -9.0949 -3.3829 40 1 0.1922 -8.9869 -5.0599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123771322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = 36.869932 kcal Electronic energy + Delta-G solvation = -20933.507426 eV Core-core repulsion = 17749.780636 eV Total energy + Delta-G solvation = -3183.726790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18537 -39.15189 -36.73565 -34.18289 -33.55120 -33.30748 -31.99103 -29.17372 -27.26772 -26.52804 -25.39995 -23.78590 -21.48442 -21.17119 -19.86571 -19.68201 -19.22329 -17.28326 -16.67927 -16.00004 -15.81031 -15.51829 -14.90064 -14.70526 -14.48965 -14.00770 -13.69721 -13.41450 -13.20257 -13.02954 -12.90708 -12.66404 -12.38175 -11.95645 -11.78680 -11.59094 -11.09135 -11.00722 -10.98366 -10.58087 -10.25033 -10.04629 -9.73090 -9.64360 -9.34435 -9.06724 -8.52211 -8.47648 -8.28488 -8.11001 -6.10635 -4.20759 1.90464 2.64616 3.04445 3.16110 3.22816 3.29341 3.30082 3.80971 4.31243 4.45583 4.51071 4.68181 4.86309 5.00798 5.07826 5.16696 5.17243 5.23972 5.31655 5.47405 5.53750 5.66476 5.91130 6.02362 6.07069 6.17533 6.32813 6.46204 6.55217 6.65311 6.70203 6.85288 7.04391 7.10832 7.25279 7.37431 7.51746 7.77573 8.03207 8.25560 8.31169 8.79650 8.83957 9.46337 10.96448 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.003815 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.863376 B = 7338.101094 C = 8083.488286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.065 4.065 4 C -0.030 4.030 5 N -0.490 5.490 6 C 0.214 3.786 7 C -0.018 4.018 8 C -0.134 4.134 9 C 0.505 3.495 10 O -0.559 6.559 11 N -0.703 5.703 12 C 0.163 3.837 13 C 0.024 3.976 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 15.146 5.922 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.198 4.198 4 C -0.178 4.178 5 N -0.208 5.208 6 C -0.049 4.049 7 C -0.057 4.057 8 C -0.176 4.176 9 C 0.290 3.710 10 O -0.439 6.439 11 N -0.351 5.351 12 C 0.040 3.960 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.971 14.117 6.769 16.426 hybrid contribution -1.492 1.335 -1.068 2.269 sum 3.479 15.452 5.700 16.834 Atomic orbital electron populations 1.22105 0.76568 1.05008 1.03816 1.45348 1.07658 1.06677 1.54462 1.22675 0.91457 0.92497 1.13132 1.22302 0.96362 0.91292 1.07839 1.70275 1.18563 1.11917 1.20090 1.23381 0.85706 0.90971 1.04822 1.19725 1.03097 0.85956 0.96963 1.21597 1.03718 0.94417 0.97832 1.20388 0.78117 0.88181 0.84309 1.90664 1.53172 1.68611 1.31420 1.46004 1.66339 1.14932 1.07823 1.20999 0.98320 0.79227 0.97489 1.19036 0.92905 0.94370 0.91407 1.20316 0.92438 1.17824 1.23289 0.92271 1.24986 0.98221 0.94902 0.94945 1.69979 1.19625 1.21839 1.39583 0.86693 0.80834 0.80046 0.80601 1.20259 1.21257 1.20238 1.23022 0.93115 1.08732 0.99938 1.22467 1.01044 0.93080 1.01453 0.90369 0.89533 0.89016 0.81045 0.81443 0.89628 0.87868 0.88404 0.89463 0.76456 0.91486 0.94122 0.92794 0.90405 0.91673 0.91814 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.79 59.85 0.65 1.12 16 2 N -0.46 -4.84 3.15 -121.28 -0.38 -5.22 16 3 C -0.06 -0.64 11.58 -16.56 -0.19 -0.83 16 4 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 5 N -0.49 -7.11 11.25 -10.82 -0.12 -7.24 16 6 C 0.21 2.77 7.16 -155.41 -1.11 1.66 16 7 C -0.02 -0.23 4.60 -27.88 -0.13 -0.36 16 8 C -0.13 -1.76 5.68 -27.89 -0.16 -1.92 16 9 C 0.50 8.84 7.83 -10.98 -0.09 8.75 16 10 O -0.56 -11.69 15.98 5.56 0.09 -11.60 16 11 N -0.70 -13.10 5.48 -60.30 -0.33 -13.43 16 12 C 0.16 3.61 5.50 -4.05 -0.02 3.58 16 13 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 14 C -0.50 -12.63 8.59 -34.44 -0.30 -12.92 16 15 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 16 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 17 N -0.87 -23.85 12.65 55.43 0.70 -23.15 16 18 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 23 C -0.14 -3.24 9.14 -26.69 -0.24 -3.49 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 30 H 0.10 1.45 8.10 -51.93 -0.42 1.03 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.40 6.86 8.33 -40.82 -0.34 6.52 16 34 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 36 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -31.44 344.34 -8.45 -39.88 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.17 Total: 7.94 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.40 Total: -7.45 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.13 Total: -49.04 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.44 -8.45 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123771322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.754 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds