Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36883 * 126.39842 * 2 1 4 4 C 1.34673 * 106.81395 * 180.02562 * 3 2 1 5 5 N 1.34125 * 108.02158 * 359.78105 * 4 3 2 6 6 C 1.30497 * 109.25673 * 0.36743 * 5 4 3 7 7 C 1.50707 * 125.65041 * 179.89732 * 6 5 4 8 8 C 1.52994 * 109.47009 * 269.69319 * 7 6 5 9 9 C 1.50698 * 109.47153 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00330 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.08992 * 109.47228 * 269.98081 * 1 2 3 25 25 H 1.08999 * 109.46782 * 29.97819 * 1 2 3 26 26 H 1.08994 * 109.47289 * 149.97746 * 1 2 3 27 27 H 1.07994 * 126.59440 * 0.05220 * 3 2 1 28 28 H 1.07993 * 125.98817 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47080 * 149.69156 * 7 6 5 30 30 H 1.09002 * 109.46869 * 29.69264 * 7 6 5 31 31 H 1.09005 * 109.47336 * 59.99445 * 8 7 6 32 32 H 1.09009 * 109.47164 * 300.00067 * 8 7 6 33 33 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 35 35 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 36 36 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 37 37 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 38 38 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 39 39 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 40 40 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0006 5 7 3.5095 -0.6904 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8017 -2.5207 0.0000 8 6 1.6432 -3.0060 -1.4422 9 6 1.1780 -4.4394 -1.4416 10 8 0.9920 -5.0162 -0.3911 11 7 0.9697 -5.0808 -2.6086 12 6 0.5169 -6.4740 -2.6080 13 6 0.4738 -6.9968 -4.0452 14 6 -0.5328 -6.3323 -4.9486 15 1 -0.2298 -5.5139 -5.5850 16 6 -1.8391 -6.7729 -4.9672 17 7 -2.1868 -7.8292 -4.2652 18 14 -3.1151 -5.8693 -5.9894 19 1 -2.7096 -5.8891 -7.4178 20 1 -4.4330 -6.5371 -5.8392 21 1 -3.2174 -4.4630 -5.5233 22 6 1.7937 -7.4512 -4.6716 23 6 0.7432 -8.4871 -4.2633 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5141 27 1 1.9614 2.1345 0.0008 28 1 4.4369 1.2609 -0.0003 29 1 0.8435 -2.5919 0.5148 30 1 2.5368 -3.1406 0.5133 31 1 2.6014 -2.9347 -1.9570 32 1 0.9081 -2.3860 -1.9555 33 1 1.1188 -4.6196 -3.4488 34 1 -0.4796 -6.5321 -2.1702 35 1 1.2074 -7.0802 -2.0215 36 1 -3.0876 -8.1824 -4.3344 37 1 1.9340 -7.2695 -5.7372 38 1 2.6927 -7.3781 -4.0596 39 1 0.9517 -9.0949 -3.3829 40 1 0.1922 -8.9869 -5.0599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123771322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = 17.829356 kcal Electronic energy + Delta-G solvation = -20934.333087 eV Core-core repulsion = 17749.780636 eV Total energy + Delta-G solvation = -3184.552452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.01389 -40.65439 -38.49130 -35.00196 -34.92680 -34.58356 -33.93961 -30.17892 -28.30015 -27.79103 -27.16946 -25.02732 -22.93061 -22.27907 -21.37223 -20.99239 -20.57652 -18.44045 -18.05755 -17.45291 -16.82302 -16.77505 -16.56931 -16.29252 -15.63975 -15.40252 -14.89941 -14.61624 -14.31008 -14.21485 -13.92282 -13.65461 -13.54433 -13.40523 -13.31154 -12.95639 -12.92154 -12.78142 -12.37723 -12.15162 -12.02059 -11.41403 -10.95574 -10.93241 -10.89730 -10.54039 -10.42781 -10.03813 -9.81951 -9.29500 -8.07784 -6.22579 1.09242 1.45095 1.45906 1.52783 1.73862 1.92214 2.13784 2.41356 2.46857 3.19878 3.41992 3.57230 3.82351 3.90676 4.03179 4.17131 4.19628 4.29108 4.41239 4.51933 4.55720 4.63281 4.66528 4.69482 4.72059 4.75688 4.95259 5.00681 5.04319 5.06083 5.29408 5.38089 5.56689 5.61289 5.71554 5.79351 5.87927 6.25228 6.37934 6.77388 6.85797 7.18082 7.38820 7.47460 8.98942 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.003815 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.863376 B = 7338.101094 C = 8083.488286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.457 5.457 3 C -0.047 4.047 4 C -0.059 4.059 5 N -0.528 5.528 6 C 0.192 3.808 7 C -0.010 4.010 8 C -0.117 4.117 9 C 0.506 3.494 10 O -0.595 6.595 11 N -0.700 5.700 12 C 0.179 3.821 13 C 0.004 3.996 14 C -0.506 4.506 15 H 0.064 0.936 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.292 1.292 21 H -0.269 1.269 22 C -0.179 4.179 23 C -0.155 4.155 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.211 0.789 28 H 0.185 0.815 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.411 0.589 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 17.830 5.230 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.139 5.139 3 C -0.181 4.181 4 C -0.207 4.207 5 N -0.248 5.248 6 C -0.070 4.070 7 C -0.049 4.049 8 C -0.158 4.158 9 C 0.293 3.707 10 O -0.477 6.477 11 N -0.349 5.349 12 C 0.054 3.946 13 C 0.004 3.996 14 C -0.543 4.543 15 H 0.083 0.917 16 C -0.176 4.176 17 N -0.545 5.545 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.218 1.218 21 H -0.194 1.194 22 C -0.216 4.216 23 C -0.193 4.193 24 H 0.108 0.892 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.228 0.772 28 H 0.202 0.798 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.247 0.753 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.061 16.828 6.057 18.587 hybrid contribution -1.488 0.539 -0.815 1.780 sum 3.573 17.367 5.242 18.489 Atomic orbital electron populations 1.22382 0.74533 1.06226 1.04995 1.45561 1.08929 1.06153 1.53277 1.23283 0.90700 0.93772 1.10316 1.22755 0.98183 0.90633 1.09121 1.70189 1.19812 1.13735 1.21066 1.23150 0.85968 0.91273 1.06626 1.19550 1.02656 0.86239 0.96481 1.21509 1.04600 0.91127 0.98562 1.21121 0.76802 0.89597 0.83160 1.90650 1.54538 1.69837 1.32652 1.45900 1.66427 1.13737 1.08856 1.20557 0.96189 0.81276 0.96567 1.19082 0.94387 0.94410 0.91750 1.20639 0.92923 1.17684 1.23098 0.91749 1.25707 1.00169 0.95536 0.96179 1.70111 1.19740 1.23411 1.41273 0.85737 0.78194 0.79078 0.79340 1.19652 1.21838 1.19365 1.23002 0.92651 1.05528 1.00458 1.22387 1.02477 0.93234 1.01220 0.89244 0.86936 0.89242 0.77249 0.79801 0.89345 0.89768 0.87342 0.87084 0.75316 0.95332 0.94538 0.93219 0.89731 0.89515 0.91367 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 10.79 127.77 1.38 2.04 16 2 N -0.46 -8.49 3.15 -537.62 -1.69 -10.18 16 3 C -0.05 -0.78 11.58 83.09 0.96 0.18 16 4 C -0.06 -1.29 11.87 83.52 0.99 -0.30 16 5 N -0.53 -14.92 11.25 -188.13 -2.12 -17.04 16 6 C 0.19 4.75 7.16 138.13 0.99 5.74 16 7 C -0.01 -0.24 4.60 29.85 0.14 -0.11 16 8 C -0.12 -2.90 5.68 29.85 0.17 -2.73 16 9 C 0.51 17.42 7.83 87.66 0.69 18.11 16 10 O -0.59 -25.13 15.98 -3.02 -0.05 -25.18 16 11 N -0.70 -25.61 5.48 -463.07 -2.54 -28.15 16 12 C 0.18 7.99 5.50 86.38 0.48 8.46 16 13 C 0.00 0.20 1.47 -52.93 -0.08 0.13 16 14 C -0.51 -25.21 8.59 25.60 0.22 -24.99 16 15 H 0.06 3.08 7.82 -2.91 -0.02 3.05 16 16 C 0.02 1.29 5.43 84.65 0.46 1.75 16 17 N -0.91 -50.43 12.65 21.45 0.27 -50.16 16 18 Si 0.95 40.97 29.54 68.60 2.03 43.00 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 C -0.18 -7.15 9.96 30.62 0.30 -6.84 16 23 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 1.05 7.66 -2.39 -0.02 1.03 16 27 H 0.21 1.68 8.06 -2.91 -0.02 1.65 16 28 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.09 2.12 7.66 -2.39 -0.02 2.10 16 30 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 31 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.41 13.40 8.33 -92.71 -0.77 12.63 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.64 8.09 -2.38 -0.02 1.62 16 36 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -68.57 344.34 3.13 -65.44 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.26 Total: 27.64 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 6.97 Total: -5.36 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -6.08 Total: -105.54 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -68.57 3.13 -65.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123771322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.265 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds