Wall clock time and date at job start Mon Mar 30 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99905 * 2 1 4 4 H 1.07995 * 120.00160 * 159.27828 * 3 2 1 5 5 C 1.38816 * 119.99604 * 338.99462 * 3 2 1 6 6 N 1.31616 * 119.99963 * 348.39924 * 5 3 2 7 7 Si 1.86797 * 119.99743 * 168.39874 * 5 3 2 8 8 H 1.48506 * 109.47418 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47123 * 120.00078 * 7 5 3 10 10 H 1.48496 * 109.47416 * 239.99827 * 7 5 3 11 11 C 1.46502 * 120.00321 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47154 * 270.00328 * 11 2 1 13 13 C 1.38883 * 120.75047 * 89.99924 * 12 11 2 14 14 C 1.38023 * 119.33276 * 179.97438 * 13 12 11 15 15 N 1.31966 * 120.85388 * 359.97438 * 14 13 12 16 16 C 1.32393 * 121.62500 * 359.97438 * 15 14 13 17 17 N 1.39009 * 119.70514 * 179.97438 * 16 15 14 18 18 C 1.47014 * 110.99707 * 123.64053 * 17 16 15 19 19 C 1.53100 * 109.25826 * 177.60867 * 18 17 16 20 20 O 1.43014 * 109.25748 * 56.84387 * 19 18 17 21 21 C 1.43012 * 113.73997 * 301.32945 * 20 19 18 22 22 C 1.47013 * 111.00219 * 0.02562 * 17 16 15 23 23 C 1.38306 * 120.74711 * 269.72144 * 12 11 2 24 24 H 1.08999 * 109.47118 * 84.90499 * 1 2 3 25 25 H 1.09001 * 109.47003 * 204.89656 * 1 2 3 26 26 H 1.08994 * 109.47481 * 324.89984 * 1 2 3 27 27 H 0.97006 * 119.99682 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.46986 * 29.99881 * 11 2 1 29 29 H 1.09002 * 109.46996 * 150.00319 * 11 2 1 30 30 H 1.07998 * 120.33005 * 359.94952 * 13 12 11 31 31 H 1.07994 * 119.56999 * 180.02562 * 14 13 12 32 32 H 1.09004 * 109.50654 * 297.53673 * 18 17 16 33 33 H 1.08995 * 109.51428 * 57.67145 * 18 17 16 34 34 H 1.08998 * 109.50882 * 296.91230 * 19 18 17 35 35 H 1.09001 * 109.54177 * 176.80302 * 19 18 17 36 36 H 1.08999 * 109.50892 * 298.73430 * 21 20 19 37 37 H 1.09004 * 109.54255 * 178.62402 * 21 20 19 38 38 H 1.09003 * 109.50499 * 302.32468 * 22 17 16 39 39 H 1.08996 * 109.50733 * 62.45353 * 22 17 16 40 40 H 1.08001 * 120.44449 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1772 1.2162 0.3309 5 6 1.5247 2.3481 -0.4309 6 7 0.3648 2.2811 -1.0493 7 14 2.3299 4.0071 -0.1332 8 1 3.6200 3.8111 0.5759 9 1 2.5780 4.6777 -1.4348 10 1 1.4324 4.8515 0.6954 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.5334 -2.5047 2.0914 14 6 1.7932 -2.8858 3.3922 15 7 2.8970 -2.4989 4.0032 16 6 3.7941 -1.7357 3.3986 17 7 4.9429 -1.3511 4.0803 18 6 6.1510 -1.7544 3.3461 19 6 7.3886 -1.2602 4.0999 20 8 7.3669 -1.7778 5.4329 21 6 6.2042 -1.4038 6.1770 22 6 4.9550 -1.9000 5.4441 23 6 3.5986 -1.3173 2.0862 24 1 -0.3633 0.0913 -1.0236 25 1 -0.3633 -0.9322 0.4326 26 1 -0.3634 0.8407 0.5909 27 1 -0.0721 3.0933 -1.3501 28 1 1.6085 -2.0286 -0.5129 29 1 3.1500 -1.1385 -0.5133 30 1 0.6273 -2.8261 1.5993 31 1 1.0843 -3.5094 3.9165 32 1 6.1831 -2.8411 3.2669 33 1 6.1338 -1.3164 2.3482 34 1 7.3839 -0.1707 4.1325 35 1 8.2880 -1.6052 3.5900 36 1 6.1652 -0.3185 6.2700 37 1 6.2463 -1.8529 7.1693 38 1 4.0644 -1.5682 5.9778 39 1 4.9680 -2.9889 5.3981 40 1 4.3334 -0.6975 1.5939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137437912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:04 Heat of formation + Delta-G solvation = 33.913238 kcal Electronic energy + Delta-G solvation = -21760.056710 eV Core-core repulsion = 18576.201708 eV Total energy + Delta-G solvation = -3183.855002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58403 -38.96034 -36.17184 -35.31221 -32.74357 -31.41131 -30.52876 -30.23158 -26.98944 -26.40708 -25.82485 -24.31843 -22.45778 -22.14276 -20.93869 -19.98935 -17.34099 -16.82905 -16.39076 -15.85760 -15.63171 -15.34286 -15.07675 -14.91441 -14.85207 -14.31204 -13.80111 -13.62621 -13.21920 -12.97495 -12.89113 -12.40533 -11.84264 -11.57987 -11.53367 -11.37363 -11.12515 -10.92061 -10.80116 -10.69279 -10.39645 -10.12472 -10.00772 -9.94994 -9.51385 -9.20557 -9.05806 -8.57541 -7.87357 -6.85473 -5.76485 -3.22784 1.52983 1.75301 3.35862 3.43423 3.45377 3.47696 3.72441 4.15415 4.49785 4.57482 4.80465 4.89933 5.00105 5.09627 5.18092 5.28232 5.38177 5.41860 5.49036 5.51040 5.59254 5.63551 5.67699 5.69326 5.85513 5.91215 6.05005 6.24710 6.29666 6.51657 6.66787 6.73107 6.81505 6.95814 7.01089 7.36627 7.39724 7.67904 7.78194 8.30652 8.32733 9.18204 9.79990 10.26947 11.28345 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.005143 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.127209 B = 5442.467134 C = 6489.001885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.592 5.592 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.181 3.819 12 C -0.018 4.018 13 C -0.189 4.189 14 C 0.112 3.888 15 N -0.532 5.532 16 C 0.298 3.702 17 N -0.475 5.475 18 C 0.022 3.978 19 C 0.064 3.936 20 O -0.387 6.387 21 C 0.060 3.940 22 C 0.033 3.967 23 C -0.164 4.164 24 H 0.032 0.968 25 H -0.003 1.003 26 H 0.044 0.956 27 H 0.252 0.748 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.785 -10.198 9.430 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.313 5.313 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.053 3.947 12 C -0.030 4.030 13 C -0.210 4.210 14 C -0.044 4.044 15 N -0.248 5.248 16 C 0.067 3.933 17 N -0.194 5.194 18 C -0.104 4.104 19 C -0.013 4.013 20 O -0.306 6.306 21 C -0.017 4.017 22 C -0.094 4.094 23 C -0.187 4.187 24 H 0.051 0.949 25 H 0.015 0.985 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.012 -9.877 10.319 16.890 hybrid contribution -0.299 0.794 -0.772 1.147 sum 8.714 -9.083 9.547 15.798 Atomic orbital electron populations 1.20847 0.82134 0.95555 0.99539 1.43892 1.01981 1.00044 1.85418 1.19228 0.96976 0.85132 1.37042 0.91269 1.24972 0.97523 0.98429 0.98570 1.70091 1.17147 1.26816 1.41267 0.86179 0.78746 0.84158 0.77461 1.20239 1.21647 1.21590 1.19800 0.97296 0.89204 0.88415 1.21615 0.91011 0.89978 1.00379 1.21895 1.00907 1.01942 0.96275 1.22311 0.93185 0.96824 0.92111 1.67424 1.04844 1.13725 1.38771 1.19669 0.91429 0.91951 0.90258 1.59407 1.00701 1.55935 1.03349 1.22940 0.88980 0.99773 0.98749 1.22697 0.96961 0.98958 0.82697 1.87967 1.42153 1.75262 1.25178 1.22789 0.83963 1.00082 0.94908 1.22597 0.99433 0.98897 0.88470 1.21392 1.00208 1.03118 0.94011 0.94928 0.98462 0.93683 0.93751 0.92984 0.92118 0.85501 0.83478 0.93031 0.88557 0.91857 0.87976 0.92214 0.88210 0.88784 0.92595 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.96 59.85 0.54 4.54 16 2 N -0.59 -14.64 2.91 -182.50 -0.53 -15.17 16 3 C -0.25 -6.90 9.68 -15.06 -0.15 -7.05 16 4 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.30 10.51 55.49 0.58 -25.71 16 7 Si 0.90 21.93 29.57 -169.99 -5.03 16.91 16 8 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 C 0.18 3.60 5.82 -5.19 -0.03 3.57 16 12 C -0.02 -0.33 5.50 -104.36 -0.57 -0.91 16 13 C -0.19 -3.10 9.81 -39.42 -0.39 -3.49 16 14 C 0.11 1.74 11.17 -17.57 -0.20 1.54 16 15 N -0.53 -8.95 8.71 -12.44 -0.11 -9.05 16 16 C 0.30 5.06 6.40 -155.02 -0.99 4.07 16 17 N -0.48 -7.07 4.75 -172.89 -0.82 -7.89 16 18 C 0.02 0.27 5.39 -3.71 -0.02 0.25 16 19 C 0.06 0.68 7.01 37.21 0.26 0.94 16 20 O -0.39 -4.70 10.83 -35.23 -0.38 -5.08 16 21 C 0.06 0.65 7.01 37.21 0.26 0.91 16 22 C 0.03 0.44 4.82 -3.71 -0.02 0.42 16 23 C -0.16 -2.94 8.92 -39.22 -0.35 -3.29 16 24 H 0.03 0.85 7.40 -51.93 -0.38 0.47 16 25 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 26 H 0.04 1.20 7.16 -51.93 -0.37 0.83 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 29 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.13 6.82 -51.93 -0.35 0.78 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 39 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 40 H 0.13 2.29 7.18 -52.49 -0.38 1.91 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -31.27 325.74 -9.19 -40.46 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.07 Total: -0.89 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.75 Total: 1.52 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.88 Total: -57.83 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.27 -9.19 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137437912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.372 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds