Wall clock time and date at job start Mon Mar 30 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99905 * 2 1 4 4 H 1.07995 * 120.00160 * 159.27828 * 3 2 1 5 5 C 1.38816 * 119.99604 * 338.99462 * 3 2 1 6 6 N 1.31616 * 119.99963 * 348.39924 * 5 3 2 7 7 Si 1.86797 * 119.99743 * 168.39874 * 5 3 2 8 8 H 1.48506 * 109.47418 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47123 * 120.00078 * 7 5 3 10 10 H 1.48496 * 109.47416 * 239.99827 * 7 5 3 11 11 C 1.46502 * 120.00321 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47154 * 270.00328 * 11 2 1 13 13 C 1.38883 * 120.75047 * 89.99924 * 12 11 2 14 14 C 1.38023 * 119.33276 * 179.97438 * 13 12 11 15 15 N 1.31966 * 120.85388 * 359.97438 * 14 13 12 16 16 C 1.32393 * 121.62500 * 359.97438 * 15 14 13 17 17 N 1.39009 * 119.70514 * 179.97438 * 16 15 14 18 18 C 1.47014 * 110.99707 * 123.64053 * 17 16 15 19 19 C 1.53100 * 109.25826 * 177.60867 * 18 17 16 20 20 O 1.43014 * 109.25748 * 56.84387 * 19 18 17 21 21 C 1.43012 * 113.73997 * 301.32945 * 20 19 18 22 22 C 1.47013 * 111.00219 * 0.02562 * 17 16 15 23 23 C 1.38306 * 120.74711 * 269.72144 * 12 11 2 24 24 H 1.08999 * 109.47118 * 84.90499 * 1 2 3 25 25 H 1.09001 * 109.47003 * 204.89656 * 1 2 3 26 26 H 1.08994 * 109.47481 * 324.89984 * 1 2 3 27 27 H 0.97006 * 119.99682 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.46986 * 29.99881 * 11 2 1 29 29 H 1.09002 * 109.46996 * 150.00319 * 11 2 1 30 30 H 1.07998 * 120.33005 * 359.94952 * 13 12 11 31 31 H 1.07994 * 119.56999 * 180.02562 * 14 13 12 32 32 H 1.09004 * 109.50654 * 297.53673 * 18 17 16 33 33 H 1.08995 * 109.51428 * 57.67145 * 18 17 16 34 34 H 1.08998 * 109.50882 * 296.91230 * 19 18 17 35 35 H 1.09001 * 109.54177 * 176.80302 * 19 18 17 36 36 H 1.08999 * 109.50892 * 298.73430 * 21 20 19 37 37 H 1.09004 * 109.54255 * 178.62402 * 21 20 19 38 38 H 1.09003 * 109.50499 * 302.32468 * 22 17 16 39 39 H 1.08996 * 109.50733 * 62.45353 * 22 17 16 40 40 H 1.08001 * 120.44449 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1772 1.2162 0.3309 5 6 1.5247 2.3481 -0.4309 6 7 0.3648 2.2811 -1.0493 7 14 2.3299 4.0071 -0.1332 8 1 3.6200 3.8111 0.5759 9 1 2.5780 4.6777 -1.4348 10 1 1.4324 4.8515 0.6954 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.5334 -2.5047 2.0914 14 6 1.7932 -2.8858 3.3922 15 7 2.8970 -2.4989 4.0032 16 6 3.7941 -1.7357 3.3986 17 7 4.9429 -1.3511 4.0803 18 6 6.1510 -1.7544 3.3461 19 6 7.3886 -1.2602 4.0999 20 8 7.3669 -1.7778 5.4329 21 6 6.2042 -1.4038 6.1770 22 6 4.9550 -1.9000 5.4441 23 6 3.5986 -1.3173 2.0862 24 1 -0.3633 0.0913 -1.0236 25 1 -0.3633 -0.9322 0.4326 26 1 -0.3634 0.8407 0.5909 27 1 -0.0721 3.0933 -1.3501 28 1 1.6085 -2.0286 -0.5129 29 1 3.1500 -1.1385 -0.5133 30 1 0.6273 -2.8261 1.5993 31 1 1.0843 -3.5094 3.9165 32 1 6.1831 -2.8411 3.2669 33 1 6.1338 -1.3164 2.3482 34 1 7.3839 -0.1707 4.1325 35 1 8.2880 -1.6052 3.5900 36 1 6.1652 -0.3185 6.2700 37 1 6.2463 -1.8529 7.1693 38 1 4.0644 -1.5682 5.9778 39 1 4.9680 -2.9889 5.3981 40 1 4.3334 -0.6975 1.5939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137437912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:03 Heat of formation + Delta-G solvation = 14.353060 kcal Electronic energy + Delta-G solvation = -21760.904903 eV Core-core repulsion = 18576.201708 eV Total energy + Delta-G solvation = -3184.703195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76393 -40.04467 -37.75262 -36.61501 -34.35970 -32.66061 -32.06884 -31.42853 -28.38294 -27.78682 -27.75472 -25.40172 -23.84541 -23.53921 -22.32026 -21.21461 -18.87609 -18.34377 -17.60800 -17.01175 -16.87545 -16.84179 -16.38723 -16.08234 -15.86015 -15.48821 -15.45368 -15.15626 -14.82705 -14.55724 -14.21783 -13.53373 -13.31351 -13.05538 -12.88322 -12.84823 -12.57795 -12.51399 -12.40146 -12.16503 -12.01099 -11.88976 -11.68472 -11.17553 -10.75650 -10.57414 -10.44730 -10.41770 -9.07966 -8.85126 -7.84831 -5.32620 0.25438 0.40049 1.43075 1.45396 1.54812 2.37956 2.48456 2.86387 2.89102 3.29499 3.48863 3.81327 3.82897 3.91950 3.98176 4.09473 4.13280 4.19975 4.27651 4.29707 4.33966 4.51930 4.66026 4.68194 4.75430 4.81359 4.85618 4.92551 4.93239 4.95832 5.05022 5.34865 5.49651 5.60530 5.63361 5.66776 5.71594 6.08377 6.15212 6.29013 7.04109 7.12600 7.82428 8.24597 9.18421 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.005143 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.127209 B = 5442.467134 C = 6489.001885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.255 4.255 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.963 3.037 8 H -0.268 1.268 9 H -0.289 1.289 10 H -0.294 1.294 11 C 0.182 3.818 12 C -0.032 4.032 13 C -0.193 4.193 14 C 0.116 3.884 15 N -0.541 5.541 16 C 0.293 3.707 17 N -0.487 5.487 18 C 0.023 3.977 19 C 0.066 3.934 20 O -0.397 6.397 21 C 0.063 3.937 22 C 0.037 3.963 23 C -0.179 4.179 24 H 0.009 0.991 25 H 0.032 0.968 26 H 0.013 0.987 27 H 0.248 0.752 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.145 0.855 31 H 0.183 0.817 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -11.123 10.721 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.331 5.331 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.792 3.208 8 H -0.192 1.192 9 H -0.216 1.216 10 H -0.221 1.221 11 C 0.056 3.944 12 C -0.043 4.043 13 C -0.214 4.214 14 C -0.041 4.041 15 N -0.256 5.256 16 C 0.063 3.937 17 N -0.206 5.206 18 C -0.103 4.103 19 C -0.011 4.011 20 O -0.316 6.316 21 C -0.014 4.014 22 C -0.090 4.090 23 C -0.203 4.203 24 H 0.027 0.973 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.200 0.800 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.063 -10.836 11.627 18.812 hybrid contribution -0.577 0.969 -1.126 1.594 sum 9.486 -9.867 10.501 17.252 Atomic orbital electron populations 1.20563 0.82357 0.95904 0.97750 1.44083 1.02193 1.01091 1.85783 1.19494 0.97062 0.86310 1.35677 0.91266 1.25682 0.98320 1.01471 0.99158 1.70239 1.18449 1.27095 1.42755 0.85261 0.78079 0.80384 0.77121 1.19239 1.21560 1.22119 1.19893 0.97008 0.87702 0.89815 1.21389 0.92089 0.91457 0.99328 1.22102 1.01060 1.01532 0.96724 1.22891 0.93079 0.96195 0.91908 1.67540 1.05305 1.13806 1.38982 1.19869 0.92237 0.91585 0.90056 1.59440 1.00848 1.56043 1.04233 1.23020 0.88691 0.99648 0.98986 1.22824 0.97041 0.99040 0.82186 1.87960 1.42410 1.75514 1.25728 1.22870 0.82623 1.00336 0.95524 1.22606 1.00301 0.98374 0.87691 1.21408 1.00385 1.03745 0.94728 0.97303 0.94950 0.96860 0.94302 0.91087 0.92244 0.83709 0.79973 0.93305 0.88419 0.91751 0.85416 0.92053 0.85790 0.89576 0.93305 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.96 127.77 1.15 9.91 16 2 N -0.61 -30.02 2.91 -731.32 -2.13 -32.14 16 3 C -0.26 -13.90 9.68 84.03 0.81 -13.08 16 4 H 0.07 3.69 7.86 -2.91 -0.02 3.66 16 5 C -0.05 -2.89 5.13 84.86 0.44 -2.45 16 6 N -0.94 -55.37 10.51 21.65 0.23 -55.14 16 7 Si 0.96 45.46 29.57 68.60 2.03 47.48 16 8 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 11 C 0.18 7.10 5.82 85.63 0.50 7.60 16 12 C -0.03 -1.12 5.50 -19.69 -0.11 -1.23 16 13 C -0.19 -5.91 9.81 22.37 0.22 -5.69 16 14 C 0.12 3.29 11.17 84.62 0.95 4.24 16 15 N -0.54 -17.24 8.71 -193.27 -1.68 -18.93 16 16 C 0.29 9.68 6.40 133.06 0.85 10.53 16 17 N -0.49 -13.96 4.75 -700.90 -3.33 -17.29 16 18 C 0.02 0.53 5.39 86.31 0.47 1.00 16 19 C 0.07 1.27 7.01 72.02 0.50 1.77 16 20 O -0.40 -8.77 10.83 -148.98 -1.61 -10.39 16 21 C 0.06 1.26 7.01 72.02 0.50 1.76 16 22 C 0.04 0.93 4.82 86.31 0.42 1.35 16 23 C -0.18 -6.32 8.92 22.50 0.20 -6.12 16 24 H 0.01 0.46 7.40 -2.39 -0.02 0.44 16 25 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 26 H 0.01 0.69 7.16 -2.39 -0.02 0.68 16 27 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.07 2.47 8.03 -2.39 -0.02 2.45 16 29 H 0.06 2.29 8.00 -2.39 -0.02 2.27 16 30 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.10 2.22 6.82 -2.39 -0.02 2.21 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 2.25 7.86 -2.39 -0.02 2.23 16 39 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 40 H 0.12 4.40 7.18 -2.91 -0.02 4.38 16 Total: -1.00 -66.63 325.74 1.41 -65.22 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.02 Total: 11.60 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.89 Total: 9.58 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.92 Total: -123.50 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.61 Total: -10.39 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.63 1.41 -65.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137437912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.572 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds