Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 120.00307 * 2 1 4 4 H 1.07994 * 120.00605 * 202.37161 * 3 2 1 5 5 C 1.38819 * 119.99862 * 22.36896 * 3 2 1 6 6 N 1.31615 * 119.99773 * 11.33207 * 5 3 2 7 7 Si 1.86801 * 120.00053 * 191.33112 * 5 3 2 8 8 H 1.48498 * 109.47057 * 60.00204 * 7 5 3 9 9 H 1.48503 * 109.46852 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46824 * 300.00230 * 7 5 3 11 11 C 1.46500 * 119.99648 * 179.97438 * 2 1 3 12 12 C 1.50696 * 109.47451 * 270.00121 * 11 2 1 13 13 C 1.38873 * 120.33765 * 270.02574 * 12 11 2 14 14 C 1.38303 * 118.50902 * 179.97438 * 13 12 11 15 15 C 1.39143 * 119.09477 * 0.02562 * 14 13 12 16 16 N 1.38997 * 119.70492 * 180.27744 * 15 14 13 17 17 C 1.47010 * 111.00388 * 303.35940 * 16 15 14 18 18 C 1.53087 * 109.26215 * 177.61049 * 17 16 15 19 19 O 1.43013 * 109.25988 * 56.84807 * 18 17 16 20 20 C 1.43016 * 113.74037 * 301.32830 * 19 18 17 21 21 C 1.47018 * 110.99887 * 179.72189 * 16 15 14 22 22 N 1.32395 * 120.58606 * 359.97438 * 15 14 13 23 23 C 1.31975 * 121.62373 * 0.02562 * 22 15 14 24 24 H 1.09000 * 109.47818 * 274.20716 * 1 2 3 25 25 H 1.09003 * 109.47295 * 34.21005 * 1 2 3 26 26 H 1.09004 * 109.47366 * 154.20419 * 1 2 3 27 27 H 0.97008 * 119.99795 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46542 * 150.00335 * 11 2 1 29 29 H 1.09003 * 109.47221 * 30.00641 * 11 2 1 30 30 H 1.07999 * 120.75108 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.45475 * 180.02562 * 14 13 12 32 32 H 1.09008 * 109.50529 * 297.54410 * 17 16 15 33 33 H 1.08999 * 109.50557 * 57.67077 * 17 16 15 34 34 H 1.08999 * 109.50958 * 296.91495 * 18 17 16 35 35 H 1.08995 * 109.54450 * 176.80705 * 18 17 16 36 36 H 1.08999 * 109.51009 * 298.73700 * 20 19 18 37 37 H 1.08996 * 109.54563 * 178.62302 * 20 19 18 38 38 H 1.08998 * 109.50866 * 302.32929 * 21 16 15 39 39 H 1.09006 * 109.50216 * 62.41566 * 21 16 15 40 40 H 1.08001 * 119.56703 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1687 1.2211 -0.3559 5 6 1.5340 2.3428 0.4575 6 7 0.3845 2.2688 1.0942 7 14 2.3370 4.0047 0.1696 8 1 2.4917 4.2336 -1.2894 9 1 1.4855 5.0732 0.7513 10 1 3.6725 4.0282 0.8187 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7033 1.4215 13 6 3.6033 -1.3058 2.0828 14 6 3.7952 -1.7260 3.3864 15 6 2.8305 -2.5286 3.9876 16 7 3.0077 -2.9534 5.2991 17 6 4.2762 -3.6808 5.4506 18 6 4.4589 -4.0774 6.9179 19 8 3.3352 -4.8549 7.3398 20 6 2.0832 -4.1767 7.2067 21 6 1.8764 -3.7811 5.7422 22 7 1.7425 -2.8864 3.3233 23 6 1.5333 -2.5002 2.0788 24 1 -0.3635 0.0754 1.0248 25 1 -0.3634 0.8499 -0.5778 26 1 -0.3634 -0.9253 -0.4472 27 1 -0.0460 3.0774 1.4136 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 4.3350 -0.6826 1.5903 31 1 4.6816 -1.4352 3.9304 32 1 4.2579 -4.5774 4.8308 33 1 5.1022 -3.0405 5.1410 34 1 4.5310 -3.1793 7.5314 35 1 5.3699 -4.6659 7.0258 36 1 2.0862 -3.2815 7.8286 37 1 1.2755 -4.8368 7.5229 38 1 0.9506 -3.2140 5.6456 39 1 1.8192 -4.6789 5.1266 40 1 0.6342 -2.8120 1.5681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139433346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = 33.622546 kcal Electronic energy + Delta-G solvation = -21636.633664 eV Core-core repulsion = 18452.766057 eV Total energy + Delta-G solvation = -3183.867608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48865 -38.90433 -36.20981 -35.07610 -32.34250 -31.65303 -31.02710 -29.96560 -27.42061 -26.00979 -25.00816 -24.50217 -22.54016 -22.04082 -20.78702 -20.15224 -17.62522 -16.81574 -16.40453 -15.87228 -15.36354 -15.34176 -14.98322 -14.94919 -14.53910 -14.23704 -13.71584 -13.55267 -13.17086 -12.88173 -12.61040 -12.35947 -12.16255 -11.62594 -11.50346 -11.26032 -11.14901 -10.92480 -10.79098 -10.70001 -10.35848 -10.10063 -10.05621 -9.93292 -9.38250 -9.20086 -8.98551 -8.60177 -7.67229 -6.83744 -5.79029 -3.23280 1.66324 1.88058 3.34904 3.40369 3.41129 3.53668 3.73682 4.27685 4.47913 4.62584 4.84552 4.92483 5.00925 5.16241 5.21261 5.36479 5.37307 5.49259 5.50266 5.54380 5.62356 5.65472 5.72249 5.76882 5.91852 5.99644 6.05324 6.35514 6.45650 6.56651 6.70778 6.75720 6.94778 6.96774 7.07908 7.33746 7.49394 7.68117 7.75470 8.32439 8.46974 9.16175 9.78478 10.27274 11.25301 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.004138 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.949163 B = 6765.659132 C = 7026.630750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.589 5.589 3 C -0.257 4.257 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.186 3.814 12 C -0.146 4.146 13 C -0.042 4.042 14 C -0.182 4.182 15 C 0.279 3.721 16 N -0.475 5.475 17 C 0.022 3.978 18 C 0.065 3.935 19 O -0.387 6.387 20 C 0.060 3.940 21 C 0.033 3.967 22 N -0.520 5.520 23 C 0.121 3.879 24 H 0.028 0.972 25 H 0.047 0.953 26 H -0.001 1.001 27 H 0.254 0.746 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -12.349 7.613 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.310 5.310 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.058 3.942 12 C -0.152 4.152 13 C -0.069 4.069 14 C -0.204 4.204 15 C 0.047 3.953 16 N -0.194 5.194 17 C -0.105 4.105 18 C -0.013 4.013 19 O -0.306 6.306 20 C -0.017 4.017 21 C -0.095 4.095 22 N -0.234 5.234 23 C -0.036 4.036 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.492 -12.488 8.479 16.062 hybrid contribution 0.801 1.455 -0.843 1.863 sum 6.293 -11.033 7.636 14.820 Atomic orbital electron populations 1.20844 0.82174 0.95808 0.99399 1.44165 1.02041 1.00299 1.84495 1.19186 0.98337 0.85099 1.36001 0.91252 1.25084 0.97637 0.98683 0.98021 1.70063 1.17644 1.27382 1.39541 0.86320 0.78579 0.83616 0.77939 1.20909 1.21561 1.20882 1.19883 0.96706 0.88646 0.88946 1.22055 0.94163 0.96375 1.02653 1.21270 0.96919 0.95434 0.93308 1.21392 1.00810 1.01950 0.96258 1.19499 0.91702 0.95860 0.88208 1.59501 1.03879 1.38786 1.17267 1.22919 0.91712 0.97606 0.98244 1.22675 0.89527 0.96173 0.92892 1.87968 1.15040 1.41929 1.85640 1.22797 0.86134 0.97472 0.95284 1.22591 0.94474 0.96924 0.95463 1.67406 1.21575 1.24970 1.09443 1.22212 0.97952 0.94396 0.89087 0.95365 0.93377 0.98268 0.93555 0.92722 0.93173 0.85196 0.85768 0.93124 0.88953 0.92059 0.88149 0.92284 0.88170 0.88670 0.92586 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.01 59.85 0.54 4.49 16 2 N -0.59 -14.46 2.91 -182.50 -0.53 -14.99 16 3 C -0.26 -6.86 9.67 -15.06 -0.15 -7.01 16 4 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -26.24 10.59 55.49 0.59 -25.65 16 7 Si 0.91 21.60 29.57 -169.99 -5.03 16.57 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 C 0.19 3.69 5.85 -5.20 -0.03 3.66 16 12 C -0.15 -2.83 5.48 -104.47 -0.57 -3.40 16 13 C -0.04 -0.78 9.85 -39.32 -0.39 -1.17 16 14 C -0.18 -3.10 9.23 -39.22 -0.36 -3.47 16 15 C 0.28 4.89 6.40 -155.03 -0.99 3.90 16 16 N -0.47 -7.09 4.75 -172.89 -0.82 -7.91 16 17 C 0.02 0.26 5.40 -3.72 -0.02 0.24 16 18 C 0.06 0.65 7.01 37.20 0.26 0.91 16 19 O -0.39 -4.68 10.83 -35.23 -0.38 -5.06 16 20 C 0.06 0.67 7.01 37.21 0.26 0.93 16 21 C 0.03 0.45 4.82 -3.71 -0.02 0.44 16 22 N -0.52 -9.75 8.71 -12.44 -0.11 -9.86 16 23 C 0.12 2.29 10.85 -17.57 -0.19 2.10 16 24 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 25 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 26 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.05 1.03 7.98 -51.93 -0.41 0.62 16 29 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 30 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.12 1.81 7.20 -52.49 -0.38 1.43 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.09 0.97 6.84 -51.93 -0.35 0.62 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.41 7.86 -51.93 -0.41 1.00 16 39 H 0.06 0.81 8.03 -51.93 -0.42 0.40 16 40 H 0.15 2.52 8.06 -52.49 -0.42 2.09 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -31.22 325.52 -9.17 -40.39 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.05 Total: -0.07 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.75 Total: 1.68 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.87 Total: -58.42 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.38 Total: -5.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.22 -9.17 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139433346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.011 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds