Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00365 * 2 1 4 4 H 1.48509 * 109.47099 * 239.99910 * 3 2 1 5 5 H 1.48497 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 120.00210 * 3 2 1 7 7 C 1.37880 * 119.99679 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.85064 * 180.02562 * 7 2 1 9 9 C 1.53232 * 108.53404 * 231.32500 * 8 7 2 10 10 C 1.52956 * 109.40779 * 305.36996 * 9 8 7 11 11 H 1.09000 * 109.35532 * 303.53312 * 10 9 8 12 12 N 1.46499 * 109.41605 * 183.70553 * 10 9 8 13 13 C 1.34777 * 119.99665 * 84.92598 * 12 10 9 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 10 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 10 16 16 C 1.50698 * 109.46944 * 179.97438 * 15 13 12 17 17 C 1.29443 * 117.96607 * 94.99817 * 16 15 13 18 18 C 1.50073 * 124.08013 * 180.44667 * 17 16 15 19 19 C 1.53024 * 110.14310 * 342.87273 * 18 17 16 20 20 C 1.53386 * 108.44485 * 49.43215 * 19 18 17 21 21 C 1.50073 * 117.96214 * 274.73186 * 16 15 13 22 22 C 1.52963 * 109.81656 * 63.59703 * 10 9 8 23 23 C 1.51276 * 120.84910 * 0.02562 * 7 2 1 24 24 H 0.97009 * 119.99259 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.62679 * 351.03719 * 8 7 2 26 26 H 1.08990 * 109.62939 * 111.42060 * 8 7 2 27 27 H 1.08998 * 109.48166 * 185.39168 * 9 8 7 28 28 H 1.09003 * 109.48622 * 65.35473 * 9 8 7 29 29 H 0.97001 * 119.99790 * 264.64311 * 12 10 9 30 30 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 31 31 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 32 32 H 1.08005 * 117.96347 * 0.42322 * 17 16 15 33 33 H 1.09003 * 109.35539 * 103.07413 * 18 17 16 34 34 H 1.08992 * 109.35923 * 222.79962 * 18 17 16 35 35 H 1.08999 * 109.63849 * 169.12500 * 19 18 17 36 36 H 1.09005 * 109.63734 * 289.53576 * 19 18 17 37 37 H 1.09009 * 109.63955 * 52.24651 * 20 19 18 38 38 H 1.08994 * 109.64678 * 172.66668 * 20 19 18 39 39 H 1.08993 * 109.35723 * 283.10003 * 21 16 15 40 40 H 1.09001 * 109.35471 * 42.68560 * 21 16 15 41 41 H 1.09000 * 109.48003 * 56.38176 * 22 10 9 42 42 H 1.08998 * 109.48375 * 176.40809 * 22 10 9 43 43 H 1.09004 * 109.62353 * 8.95774 * 23 7 2 44 44 H 1.09004 * 109.62112 * 248.39215 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2167 0.0011 9 6 3.9909 -2.1320 -1.1327 10 6 3.3401 -3.5078 -0.9810 11 1 3.5737 -3.9113 0.0043 12 7 3.8603 -4.4090 -2.0122 13 6 5.0148 -5.0733 -1.8065 14 8 5.6256 -4.9210 -0.7698 15 6 5.5468 -6.0050 -2.8647 16 6 6.8402 -6.6166 -2.3913 17 6 6.7895 -7.7759 -1.8179 18 6 7.9891 -8.5048 -1.2871 19 6 9.2698 -7.9152 -1.8819 20 6 9.2225 -6.3905 -1.7209 21 6 8.1078 -5.8463 -2.6196 22 6 1.8231 -3.3834 -1.1327 23 6 1.2675 -2.5152 0.0005 24 1 -0.4849 0.8402 -0.0004 25 1 3.8982 -0.2082 -0.1589 26 1 3.8771 -1.5968 0.9570 27 1 5.0750 -2.2357 -1.0871 28 1 3.7070 -1.6993 -2.0921 29 1 3.3717 -4.5308 -2.8413 30 1 4.8189 -6.7943 -3.0530 31 1 5.7241 -5.4474 -3.7842 32 1 5.8236 -8.2480 -1.7146 33 1 8.0181 -8.4103 -0.2015 34 1 7.9199 -9.5587 -1.5562 35 1 10.1361 -8.3128 -1.3534 36 1 9.3353 -8.1732 -2.9390 37 1 9.0155 -6.1382 -0.6808 38 1 10.1788 -5.9607 -2.0187 39 1 8.4038 -5.9391 -3.6644 40 1 7.9387 -4.7951 -2.3861 41 1 1.5904 -2.9211 -2.0920 42 1 1.3707 -4.3741 -1.0874 43 1 0.2035 -2.3409 -0.1598 44 1 1.4191 -3.0189 0.9553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146748466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = -63.646618 kcal Electronic energy + Delta-G solvation = -21750.836411 eV Core-core repulsion = 18666.291240 eV Total energy + Delta-G solvation = -3084.545172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.79716 -38.33315 -36.64449 -33.64493 -32.91404 -31.50865 -30.79489 -29.67392 -28.10271 -26.44606 -23.36474 -22.48054 -21.67709 -21.42050 -19.92074 -19.44474 -17.62671 -16.84784 -16.10009 -15.80790 -15.25676 -14.95003 -14.44830 -14.40036 -13.87888 -13.52257 -13.39945 -13.10501 -12.79321 -12.64283 -12.31450 -12.26839 -12.20800 -12.05126 -11.70801 -11.53317 -11.00648 -10.89030 -10.78541 -10.69263 -10.53395 -10.29350 -10.19808 -10.02245 -9.75184 -9.54646 -9.00320 -8.88621 -8.69109 -8.47842 -8.30106 -6.11137 -4.01713 2.19213 3.00382 3.29427 3.35857 3.38222 3.72089 4.38802 4.52279 4.61925 4.82676 5.04189 5.11171 5.15750 5.22340 5.29294 5.38837 5.50016 5.51383 5.57431 5.71839 5.76101 5.84119 5.87032 5.90113 6.01164 6.09207 6.21191 6.25569 6.47926 6.50071 6.60603 6.71396 6.80351 6.89438 6.96839 6.99079 7.06715 7.26369 7.43092 7.63931 7.71088 7.77660 7.98726 8.37552 8.64415 8.95197 9.54044 10.98576 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.003566 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.094686 B = 7850.901694 C = 8297.428948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.490 4.490 8 C -0.009 4.009 9 C -0.112 4.112 10 C 0.154 3.846 11 H 0.077 0.923 12 N -0.727 5.727 13 C 0.509 3.491 14 O -0.537 6.537 15 C -0.113 4.113 16 C -0.094 4.094 17 C -0.153 4.153 18 C -0.086 4.086 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.114 4.114 23 C 0.013 3.987 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.393 0.607 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 -14.092 -7.995 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.509 4.509 8 C -0.047 4.047 9 C -0.151 4.151 10 C 0.052 3.948 11 H 0.095 0.905 12 N -0.377 5.377 13 C 0.294 3.706 14 O -0.414 6.414 15 C -0.153 4.153 16 C -0.095 4.095 17 C -0.171 4.171 18 C -0.123 4.123 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.116 4.116 22 C -0.152 4.152 23 C -0.025 4.025 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.226 0.774 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 13.196 -13.854 -7.233 20.454 hybrid contribution 0.008 0.933 -0.520 1.069 sum 13.204 -12.921 -7.753 20.035 Atomic orbital electron populations 1.69826 1.06131 1.27060 1.49844 1.24832 0.94735 0.98555 0.94502 0.86647 0.79378 0.82945 0.79057 1.20025 1.21868 1.19965 1.20045 0.89334 0.91510 1.49992 1.19588 0.96577 0.94530 0.93986 1.21883 0.97262 0.95296 1.00683 1.21014 0.94378 0.88949 0.90498 0.90530 1.46445 1.23997 1.45858 1.21426 1.20489 0.81104 0.80815 0.88194 1.90696 1.57859 1.64893 1.27914 1.20894 0.96424 0.99318 0.98622 1.20285 0.94249 0.94933 1.00015 1.21820 0.98733 0.96637 0.99919 1.20391 0.92827 0.98709 1.00402 1.21601 0.97259 0.95924 1.00917 1.21595 0.97977 0.95330 1.00695 1.20362 0.92368 0.99624 0.99291 1.21919 0.92457 0.98548 1.02310 1.19330 0.98687 0.92764 0.91706 0.92526 0.95700 0.96160 0.94526 0.93100 0.77396 0.88817 0.88718 0.88227 0.90933 0.91461 0.92000 0.91958 0.91364 0.91943 0.91304 0.90828 0.92753 0.94662 0.92087 0.97579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.73 55.43 0.71 -24.83 16 2 C 0.08 2.09 5.46 -17.82 -0.10 2.00 16 3 Si 0.89 21.48 26.80 -169.99 -4.56 16.92 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.49 -12.96 5.52 -98.92 -0.55 -13.51 16 8 C -0.01 -0.21 5.59 -27.49 -0.15 -0.36 16 9 C -0.11 -2.39 5.50 -26.63 -0.15 -2.54 16 10 C 0.15 3.05 2.35 -67.97 -0.16 2.89 16 11 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 12 N -0.73 -11.45 5.07 -53.85 -0.27 -11.72 16 13 C 0.51 8.08 7.79 -10.99 -0.09 7.99 16 14 O -0.54 -10.78 15.70 5.55 0.09 -10.70 16 15 C -0.11 -1.28 5.71 -29.04 -0.17 -1.45 16 16 C -0.09 -1.13 4.33 -100.94 -0.44 -1.57 16 17 C -0.15 -1.75 9.37 -35.90 -0.34 -2.08 16 18 C -0.09 -0.84 6.12 -28.17 -0.17 -1.01 16 19 C -0.12 -1.06 6.00 -26.52 -0.16 -1.22 16 20 C -0.12 -1.22 6.02 -26.44 -0.16 -1.38 16 21 C -0.08 -0.89 5.80 -28.09 -0.16 -1.05 16 22 C -0.11 -2.33 5.40 -26.65 -0.14 -2.47 16 23 C 0.01 0.32 5.97 -27.50 -0.16 0.16 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.59 5.17 -51.93 -0.27 0.32 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.39 4.97 8.60 -40.82 -0.35 4.62 16 30 H 0.09 0.88 7.80 -51.93 -0.40 0.47 16 31 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.10 1.09 7.74 -52.48 -0.41 0.69 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.07 0.81 8.13 -51.92 -0.42 0.39 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.63 7.07 -51.93 -0.37 1.27 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -30.41 342.87 -9.62 -40.03 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.66 Total: 0.73 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.09 Total: -15.61 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.43 Total: -36.55 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.56 Total: 16.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.41 -9.62 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146748466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.617 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds