Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00365 * 2 1 4 4 H 1.48509 * 109.47099 * 239.99910 * 3 2 1 5 5 H 1.48497 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 120.00210 * 3 2 1 7 7 C 1.37880 * 119.99679 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.85064 * 180.02562 * 7 2 1 9 9 C 1.53232 * 108.53404 * 231.32500 * 8 7 2 10 10 C 1.52956 * 109.40779 * 305.36996 * 9 8 7 11 11 H 1.09000 * 109.35532 * 303.53312 * 10 9 8 12 12 N 1.46499 * 109.41605 * 183.70553 * 10 9 8 13 13 C 1.34777 * 119.99665 * 84.92598 * 12 10 9 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 10 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 10 16 16 C 1.50698 * 109.46944 * 179.97438 * 15 13 12 17 17 C 1.29443 * 117.96607 * 94.99817 * 16 15 13 18 18 C 1.50073 * 124.08013 * 180.44667 * 17 16 15 19 19 C 1.53024 * 110.14310 * 342.87273 * 18 17 16 20 20 C 1.53386 * 108.44485 * 49.43215 * 19 18 17 21 21 C 1.50073 * 117.96214 * 274.73186 * 16 15 13 22 22 C 1.52963 * 109.81656 * 63.59703 * 10 9 8 23 23 C 1.51276 * 120.84910 * 0.02562 * 7 2 1 24 24 H 0.97009 * 119.99259 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.62679 * 351.03719 * 8 7 2 26 26 H 1.08990 * 109.62939 * 111.42060 * 8 7 2 27 27 H 1.08998 * 109.48166 * 185.39168 * 9 8 7 28 28 H 1.09003 * 109.48622 * 65.35473 * 9 8 7 29 29 H 0.97001 * 119.99790 * 264.64311 * 12 10 9 30 30 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 31 31 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 32 32 H 1.08005 * 117.96347 * 0.42322 * 17 16 15 33 33 H 1.09003 * 109.35539 * 103.07413 * 18 17 16 34 34 H 1.08992 * 109.35923 * 222.79962 * 18 17 16 35 35 H 1.08999 * 109.63849 * 169.12500 * 19 18 17 36 36 H 1.09005 * 109.63734 * 289.53576 * 19 18 17 37 37 H 1.09009 * 109.63955 * 52.24651 * 20 19 18 38 38 H 1.08994 * 109.64678 * 172.66668 * 20 19 18 39 39 H 1.08993 * 109.35723 * 283.10003 * 21 16 15 40 40 H 1.09001 * 109.35471 * 42.68560 * 21 16 15 41 41 H 1.09000 * 109.48003 * 56.38176 * 22 10 9 42 42 H 1.08998 * 109.48375 * 176.40809 * 22 10 9 43 43 H 1.09004 * 109.62353 * 8.95774 * 23 7 2 44 44 H 1.09004 * 109.62112 * 248.39215 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2167 0.0011 9 6 3.9909 -2.1320 -1.1327 10 6 3.3401 -3.5078 -0.9810 11 1 3.5737 -3.9113 0.0043 12 7 3.8603 -4.4090 -2.0122 13 6 5.0148 -5.0733 -1.8065 14 8 5.6256 -4.9210 -0.7698 15 6 5.5468 -6.0050 -2.8647 16 6 6.8402 -6.6166 -2.3913 17 6 6.7895 -7.7759 -1.8179 18 6 7.9891 -8.5048 -1.2871 19 6 9.2698 -7.9152 -1.8819 20 6 9.2225 -6.3905 -1.7209 21 6 8.1078 -5.8463 -2.6196 22 6 1.8231 -3.3834 -1.1327 23 6 1.2675 -2.5152 0.0005 24 1 -0.4849 0.8402 -0.0004 25 1 3.8982 -0.2082 -0.1589 26 1 3.8771 -1.5968 0.9570 27 1 5.0750 -2.2357 -1.0871 28 1 3.7070 -1.6993 -2.0921 29 1 3.3717 -4.5308 -2.8413 30 1 4.8189 -6.7943 -3.0530 31 1 5.7241 -5.4474 -3.7842 32 1 5.8236 -8.2480 -1.7146 33 1 8.0181 -8.4103 -0.2015 34 1 7.9199 -9.5587 -1.5562 35 1 10.1361 -8.3128 -1.3534 36 1 9.3353 -8.1732 -2.9390 37 1 9.0155 -6.1382 -0.6808 38 1 10.1788 -5.9607 -2.0187 39 1 8.4038 -5.9391 -3.6644 40 1 7.9387 -4.7951 -2.3861 41 1 1.5904 -2.9211 -2.0920 42 1 1.3707 -4.3741 -1.0874 43 1 0.2035 -2.3409 -0.1598 44 1 1.4191 -3.0189 0.9553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146748466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -80.825535 kcal Electronic energy + Delta-G solvation = -21751.581345 eV Core-core repulsion = 18666.291240 eV Total energy + Delta-G solvation = -3085.290105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03926 -39.36831 -38.24752 -35.33510 -33.91967 -33.22853 -31.59607 -31.51076 -29.56857 -27.76678 -24.32325 -23.98422 -23.34427 -22.61478 -21.31109 -21.10521 -18.46014 -18.37177 -17.55285 -17.21815 -16.46544 -16.32821 -16.09342 -15.38777 -15.05207 -14.80041 -14.58056 -14.51599 -14.37878 -14.08060 -13.93679 -13.55013 -13.41229 -13.08821 -12.95420 -12.79352 -12.71067 -12.56709 -12.48663 -12.02068 -11.83609 -11.65443 -11.61421 -11.31286 -11.08230 -11.06638 -10.78821 -10.64678 -10.55428 -9.86286 -9.62076 -8.19910 -6.13944 1.29550 1.37545 1.39347 1.47057 1.76960 2.38734 2.45873 3.08813 3.68597 3.82730 3.96096 4.07325 4.12562 4.21119 4.31396 4.38809 4.48317 4.49417 4.60041 4.68565 4.70696 4.76134 4.78267 4.84453 4.93552 5.01248 5.04869 5.05566 5.11091 5.14730 5.17919 5.21354 5.23479 5.34039 5.48327 5.52156 5.57532 5.70617 5.74184 5.77979 5.81050 6.13993 6.32676 6.73315 6.91275 7.41560 7.44438 8.90805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.003566 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.094686 B = 7850.901694 C = 8297.428948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.502 4.502 8 C -0.012 4.012 9 C -0.104 4.104 10 C 0.167 3.833 11 H 0.050 0.950 12 N -0.717 5.717 13 C 0.506 3.494 14 O -0.583 6.583 15 C -0.102 4.102 16 C -0.114 4.114 17 C -0.157 4.157 18 C -0.090 4.090 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.080 4.080 22 C -0.100 4.100 23 C 0.008 3.992 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.011 0.989 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.412 0.588 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.035 0.965 44 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -15.358 -10.003 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.521 4.521 8 C -0.050 4.050 9 C -0.143 4.143 10 C 0.062 3.938 11 H 0.069 0.931 12 N -0.368 5.368 13 C 0.294 3.706 14 O -0.463 6.463 15 C -0.142 4.142 16 C -0.114 4.114 17 C -0.175 4.175 18 C -0.127 4.127 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.117 4.117 22 C -0.138 4.138 23 C -0.030 4.030 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.249 0.751 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 14.637 -15.138 -9.278 23.011 hybrid contribution -0.442 1.262 0.172 1.348 sum 14.195 -13.877 -9.106 21.840 Atomic orbital electron populations 1.69941 1.07427 1.27627 1.51656 1.25533 0.95368 1.01510 0.94745 0.85846 0.78421 0.79684 0.79366 1.18910 1.21665 1.19771 1.20582 0.90717 0.92138 1.48688 1.19599 0.95170 0.95405 0.94791 1.21755 0.97358 0.95610 0.99595 1.20560 0.93772 0.88823 0.90646 0.93126 1.46181 1.24328 1.45032 1.21267 1.21321 0.80247 0.80560 0.88466 1.90685 1.59059 1.66379 1.30176 1.20911 0.96574 0.99098 0.97597 1.20480 0.94738 0.95301 1.00883 1.22080 0.99568 0.96798 0.99100 1.20464 0.92709 0.99751 0.99799 1.21589 0.97311 0.94566 1.01757 1.21605 0.98409 0.96726 0.99072 1.20385 0.92569 0.98151 1.00637 1.21683 0.92858 0.98866 1.00421 1.19295 0.97360 0.93322 0.92994 0.92630 0.95520 0.97033 0.94336 0.92509 0.75128 0.86182 0.86139 0.87929 0.91879 0.89585 0.90735 0.90787 0.93869 0.90600 0.89219 0.93089 0.92290 0.92276 0.94657 0.98672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 12.73 21.45 0.27 -53.80 16 2 C 0.03 1.50 5.46 84.66 0.46 1.96 16 3 Si 0.94 43.99 26.80 68.60 1.84 45.83 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.50 -26.75 5.52 -16.17 -0.09 -26.84 16 8 C -0.01 -0.55 5.59 30.11 0.17 -0.38 16 9 C -0.10 -4.33 5.50 30.66 0.17 -4.17 16 10 C 0.17 6.41 2.35 44.96 0.11 6.51 16 11 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 12 N -0.72 -20.94 5.07 -442.66 -2.25 -23.19 16 13 C 0.51 15.17 7.79 87.66 0.68 15.85 16 14 O -0.58 -23.23 15.70 -3.04 -0.05 -23.28 16 15 C -0.10 -2.02 5.71 29.10 0.17 -1.86 16 16 C -0.11 -2.48 4.33 -15.10 -0.07 -2.55 16 17 C -0.16 -3.29 9.37 27.04 0.25 -3.03 16 18 C -0.09 -1.58 6.12 29.66 0.18 -1.40 16 19 C -0.11 -1.79 6.00 30.73 0.18 -1.60 16 20 C -0.12 -2.34 6.02 30.79 0.19 -2.15 16 21 C -0.08 -1.67 5.80 29.71 0.17 -1.50 16 22 C -0.10 -3.97 5.40 30.64 0.17 -3.80 16 23 C 0.01 0.41 5.97 30.09 0.18 0.59 16 24 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 25 H 0.03 1.24 5.17 -2.39 -0.01 1.23 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.41 9.03 8.60 -92.71 -0.80 8.23 16 30 H 0.12 1.77 7.80 -2.39 -0.02 1.75 16 31 H 0.12 1.79 8.11 -2.39 -0.02 1.77 16 32 H 0.10 2.02 7.74 -2.91 -0.02 2.00 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.00 8.13 -2.38 -0.02 0.98 16 37 H 0.04 1.04 8.13 -2.38 -0.02 1.02 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.03 1.92 7.07 -2.38 -0.02 1.91 16 44 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16 Total: -1.00 -66.73 342.87 2.91 -63.81 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.17 Total: 14.99 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 2.92 Total: -24.37 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.97 Total: -76.99 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.84 Total: 45.83 kcal Total: -66.73 2.91 -63.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146748466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.012 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds