Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38875 * 110.99765 * 236.04624 * 2 1 3 5 5 C 1.38959 * 120.17511 * 60.00490 * 4 2 1 6 6 C 1.37960 * 120.06276 * 180.02562 * 5 4 2 7 7 C 1.38611 * 120.42170 * 0.02562 * 6 5 4 8 8 C 1.37744 * 120.35618 * 359.97438 * 7 6 5 9 9 C 1.39741 * 119.92508 * 359.72292 * 8 7 6 10 10 C 1.47427 * 120.20698 * 180.29916 * 9 8 7 11 11 O 1.21608 * 119.99941 * 180.27365 * 10 9 8 12 12 N 1.34778 * 120.00403 * 0.27580 * 10 9 8 13 13 C 1.46495 * 120.00077 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46869 * 179.97438 * 13 12 10 15 15 N 1.46504 * 109.46872 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99765 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00307 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99901 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99833 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47172 * 90.00375 * 20 18 16 22 22 H 1.48507 * 109.47039 * 210.00409 * 20 18 16 23 23 H 1.48498 * 109.47189 * 329.99776 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 28 28 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 30 30 H 1.07997 * 119.96630 * 0.02562 * 5 4 2 31 31 H 1.07992 * 119.78702 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.81928 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.03844 * 180.02562 * 8 7 6 34 34 H 0.97000 * 119.99638 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.47530 * 299.99626 * 13 12 10 36 36 H 1.09004 * 109.47243 * 59.99883 * 13 12 10 37 37 H 1.09004 * 109.47209 * 299.99512 * 14 13 12 38 38 H 1.08996 * 109.46998 * 59.99996 * 14 13 12 39 39 H 0.97000 * 120.00283 * 0.02562 * 15 14 13 40 40 H 0.97000 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7241 -1.0755 5 6 1.6562 -0.3455 -2.3759 6 6 2.1514 -1.0669 -3.4426 7 6 2.9597 -2.1722 -3.2276 8 6 3.2784 -2.5629 -1.9458 9 6 2.7900 -1.8391 -0.8547 10 6 3.1325 -2.2478 0.5198 11 8 2.7014 -1.6182 1.4666 12 7 3.9235 -3.3192 0.7270 13 6 4.2634 -3.7256 2.0928 14 6 5.1655 -4.9605 2.0478 15 7 5.5059 -5.3666 3.4137 16 6 6.3088 -6.4557 3.6241 17 1 6.6915 -7.0151 2.7833 18 6 6.6309 -6.8408 4.9184 19 7 7.4031 -7.8873 5.1206 20 14 5.9685 -5.8737 6.3727 21 1 4.6636 -6.4440 6.7934 22 1 6.9310 -5.9548 7.5008 23 1 5.7847 -4.4533 5.9803 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.6461 1.8947 0.8901 28 1 3.0851 1.3422 0.0005 29 1 1.6460 1.8948 -0.8900 30 1 1.0268 0.5142 -2.5518 31 1 1.9070 -0.7690 -4.4514 32 1 3.3417 -2.7301 -4.0698 33 1 3.9089 -3.4247 -1.7842 34 1 4.2677 -3.8212 -0.0283 35 1 4.7862 -2.9114 2.5947 36 1 3.3505 -3.9627 2.6391 37 1 4.6424 -5.7746 1.5461 38 1 6.0784 -4.7238 1.5013 39 1 5.1620 -4.8644 4.1689 40 1 7.6279 -8.1566 6.0250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153414129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = 29.876113 kcal Electronic energy + Delta-G solvation = -20897.813690 eV Core-core repulsion = 17713.783625 eV Total energy + Delta-G solvation = -3184.030065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60507 -38.67936 -36.80813 -35.69815 -33.83514 -31.86698 -31.08129 -30.17974 -28.06719 -27.79496 -24.95851 -24.12714 -23.02664 -21.54615 -21.09662 -20.29996 -18.20581 -17.50431 -16.64880 -16.15691 -15.48300 -15.23910 -15.09866 -15.02547 -14.65163 -14.36132 -13.84097 -13.72353 -13.68174 -13.26901 -12.80424 -12.61302 -12.55874 -12.35030 -12.10118 -11.90410 -11.54227 -11.49209 -11.44325 -10.88710 -10.82454 -10.13728 -9.75270 -9.60085 -9.29519 -9.02905 -8.95151 -8.75162 -8.47356 -7.28011 -5.78354 -3.15400 0.64156 0.95357 2.89246 3.28038 3.40595 3.44599 3.48023 3.61631 3.70557 4.50131 4.55029 4.59641 4.70614 4.88411 5.00451 5.03593 5.07640 5.27415 5.31192 5.36719 5.37611 5.47881 5.54752 5.65277 5.67573 5.69432 5.71784 5.90782 6.00851 6.07925 6.10165 6.41054 6.47679 6.63690 6.70313 6.72012 7.16784 7.70134 7.95624 8.39840 8.46542 9.17951 9.90316 10.09019 11.39595 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028234 B = 0.003383 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.477915 B = 8274.382873 C = 9079.590120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.493 5.493 3 C 0.036 3.964 4 C 0.145 3.855 5 C -0.162 4.162 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.082 4.082 9 C -0.110 4.110 10 C 0.549 3.451 11 O -0.499 6.499 12 N -0.726 5.726 13 C 0.111 3.889 14 C 0.148 3.852 15 N -0.753 5.753 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.275 1.275 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.396 0.604 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.363 0.637 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 17.395 -19.216 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.213 5.213 3 C -0.111 4.111 4 C 0.050 3.950 5 C -0.182 4.182 6 C -0.108 4.108 7 C -0.148 4.148 8 C -0.102 4.102 9 C -0.115 4.115 10 C 0.335 3.665 11 O -0.374 6.374 12 N -0.380 5.380 13 C -0.013 4.013 14 C 0.020 3.980 15 N -0.399 5.399 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.201 1.201 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.196 0.804 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.263 17.443 -18.058 28.395 hybrid contribution -0.459 0.676 -0.062 0.819 sum -13.722 18.119 -18.120 29.068 Atomic orbital electron populations 1.22410 0.85701 1.02732 1.00445 1.59217 1.08075 1.13784 1.40207 1.22384 1.00984 0.87072 1.00631 1.18761 0.94291 0.93103 0.88876 1.21685 1.02314 1.01233 0.92979 1.21181 0.96092 0.94731 0.98814 1.21119 0.99153 0.97548 0.96956 1.21387 0.98035 0.98661 0.92074 1.20084 1.00799 0.96950 0.93627 1.17986 0.79295 0.80664 0.88566 1.90843 1.51288 1.52545 1.42679 1.45872 1.51734 1.30904 1.09444 1.21543 0.99605 0.97797 0.82319 1.20736 0.95608 0.92815 0.88800 1.42536 1.61153 1.34925 1.01278 1.19017 1.21919 1.02850 0.93969 0.89104 1.24670 0.99532 0.97719 0.97035 1.69701 1.40454 1.27161 1.20713 0.86540 0.78599 0.80054 0.83354 1.20914 1.21613 1.20120 0.91244 0.95582 0.90715 0.90683 0.91294 0.95633 0.85807 0.85699 0.85245 0.85014 0.76904 0.91418 0.91410 0.94948 0.95004 0.80370 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.34 60.07 0.56 0.89 16 2 N -0.49 -5.96 2.92 -186.63 -0.54 -6.51 16 3 C 0.04 0.35 9.32 60.06 0.56 0.91 16 4 C 0.15 1.68 4.71 -83.61 -0.39 1.29 16 5 C -0.16 -1.44 8.59 -39.42 -0.34 -1.78 16 6 C -0.09 -0.67 10.03 -39.55 -0.40 -1.07 16 7 C -0.13 -0.99 10.02 -39.62 -0.40 -1.39 16 8 C -0.08 -0.77 9.53 -39.20 -0.37 -1.14 16 9 C -0.11 -1.36 5.89 -104.80 -0.62 -1.97 16 10 C 0.55 8.32 7.76 -12.52 -0.10 8.22 16 11 O -0.50 -9.26 15.03 5.27 0.08 -9.18 16 12 N -0.73 -10.12 5.51 -61.38 -0.34 -10.45 16 13 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 14 C 0.15 2.82 6.37 -4.04 -0.03 2.79 16 15 N -0.75 -18.16 5.41 -59.90 -0.32 -18.49 16 16 C -0.25 -7.08 10.47 -15.06 -0.16 -7.23 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16 20 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.20 7.11 -51.93 -0.37 -0.16 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 29 H 0.03 0.20 7.46 -51.93 -0.39 -0.18 16 30 H 0.12 0.91 7.03 -52.49 -0.37 0.54 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.97 6.40 -52.49 -0.34 0.63 16 34 H 0.40 4.38 6.50 -40.82 -0.27 4.12 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.36 8.64 5.53 -40.82 -0.23 8.42 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -34.82 332.26 -7.63 -42.45 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.77 Total: 6.68 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.80 Total: 1.45 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.43 Total: -64.11 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.82 -7.63 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153414129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.326 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds