Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38875 * 110.99765 * 236.04624 * 2 1 3 5 5 C 1.38959 * 120.17511 * 60.00490 * 4 2 1 6 6 C 1.37960 * 120.06276 * 180.02562 * 5 4 2 7 7 C 1.38611 * 120.42170 * 0.02562 * 6 5 4 8 8 C 1.37744 * 120.35618 * 359.97438 * 7 6 5 9 9 C 1.39741 * 119.92508 * 359.72292 * 8 7 6 10 10 C 1.47427 * 120.20698 * 180.29916 * 9 8 7 11 11 O 1.21608 * 119.99941 * 180.27365 * 10 9 8 12 12 N 1.34778 * 120.00403 * 0.27580 * 10 9 8 13 13 C 1.46495 * 120.00077 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46869 * 179.97438 * 13 12 10 15 15 N 1.46504 * 109.46872 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99765 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00307 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99901 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99833 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47172 * 90.00375 * 20 18 16 22 22 H 1.48507 * 109.47039 * 210.00409 * 20 18 16 23 23 H 1.48498 * 109.47189 * 329.99776 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 28 28 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 30 30 H 1.07997 * 119.96630 * 0.02562 * 5 4 2 31 31 H 1.07992 * 119.78702 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.81928 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.03844 * 180.02562 * 8 7 6 34 34 H 0.97000 * 119.99638 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.47530 * 299.99626 * 13 12 10 36 36 H 1.09004 * 109.47243 * 59.99883 * 13 12 10 37 37 H 1.09004 * 109.47209 * 299.99512 * 14 13 12 38 38 H 1.08996 * 109.46998 * 59.99996 * 14 13 12 39 39 H 0.97000 * 120.00283 * 0.02562 * 15 14 13 40 40 H 0.97000 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7241 -1.0755 5 6 1.6562 -0.3455 -2.3759 6 6 2.1514 -1.0669 -3.4426 7 6 2.9597 -2.1722 -3.2276 8 6 3.2784 -2.5629 -1.9458 9 6 2.7900 -1.8391 -0.8547 10 6 3.1325 -2.2478 0.5198 11 8 2.7014 -1.6182 1.4666 12 7 3.9235 -3.3192 0.7270 13 6 4.2634 -3.7256 2.0928 14 6 5.1655 -4.9605 2.0478 15 7 5.5059 -5.3666 3.4137 16 6 6.3088 -6.4557 3.6241 17 1 6.6915 -7.0151 2.7833 18 6 6.6309 -6.8408 4.9184 19 7 7.4031 -7.8873 5.1206 20 14 5.9685 -5.8737 6.3727 21 1 4.6636 -6.4440 6.7934 22 1 6.9310 -5.9548 7.5008 23 1 5.7847 -4.4533 5.9803 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.6461 1.8947 0.8901 28 1 3.0851 1.3422 0.0005 29 1 1.6460 1.8948 -0.8900 30 1 1.0268 0.5142 -2.5518 31 1 1.9070 -0.7690 -4.4514 32 1 3.3417 -2.7301 -4.0698 33 1 3.9089 -3.4247 -1.7842 34 1 4.2677 -3.8212 -0.0283 35 1 4.7862 -2.9114 2.5947 36 1 3.3505 -3.9627 2.6391 37 1 4.6424 -5.7746 1.5461 38 1 6.0784 -4.7238 1.5013 39 1 5.1620 -4.8644 4.1689 40 1 7.6279 -8.1566 6.0250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153414129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = 5.226518 kcal Electronic energy + Delta-G solvation = -20898.882577 eV Core-core repulsion = 17713.783625 eV Total energy + Delta-G solvation = -3185.098952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46514 -39.73520 -37.54583 -37.34492 -35.42745 -33.53560 -32.31157 -30.86658 -29.64604 -28.53828 -25.99765 -25.23000 -24.34976 -23.16394 -21.94802 -21.34464 -19.87986 -18.84534 -17.50324 -17.15607 -16.65151 -16.61631 -16.01658 -15.99324 -15.91838 -15.53287 -15.35655 -15.03362 -14.81274 -14.57947 -14.19190 -13.54504 -13.42211 -13.25788 -13.20888 -12.99758 -12.78020 -12.70082 -12.67069 -12.59294 -12.16300 -12.07067 -11.82592 -11.03424 -10.91061 -10.14792 -9.91726 -9.68806 -9.36447 -9.23824 -8.05323 -5.40501 -0.12519 0.29902 1.39596 1.41047 1.48357 1.97948 2.12504 2.46949 2.86117 2.89182 3.26528 3.66978 3.81902 3.88002 4.02886 4.11967 4.16356 4.21377 4.32789 4.33830 4.45045 4.54596 4.56406 4.61551 4.67217 4.86721 4.92270 4.92819 5.02587 5.10279 5.27772 5.38677 5.42733 5.46903 5.72471 5.79663 5.97902 6.17849 6.41572 6.63929 7.03145 7.34363 7.77738 7.95733 9.15557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028234 B = 0.003383 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.477915 B = 8274.382873 C = 9079.590120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.524 5.524 3 C 0.039 3.961 4 C 0.129 3.871 5 C -0.165 4.165 6 C -0.079 4.079 7 C -0.128 4.128 8 C -0.083 4.083 9 C -0.142 4.142 10 C 0.547 3.453 11 O -0.543 6.543 12 N -0.716 5.716 13 C 0.128 3.872 14 C 0.151 3.849 15 N -0.759 5.759 16 C -0.238 4.238 17 H 0.064 0.936 18 C -0.059 4.059 19 N -0.980 5.980 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.255 1.255 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.411 0.589 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.366 0.634 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 18.898 -21.428 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.245 5.245 3 C -0.107 4.107 4 C 0.033 3.967 5 C -0.185 4.185 6 C -0.097 4.097 7 C -0.145 4.145 8 C -0.102 4.102 9 C -0.146 4.146 10 C 0.335 3.665 11 O -0.420 6.420 12 N -0.371 5.371 13 C 0.003 3.997 14 C 0.024 3.976 15 N -0.405 5.405 16 C -0.369 4.369 17 H 0.082 0.918 18 C -0.251 4.251 19 N -0.630 5.630 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.180 1.180 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.199 0.801 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.428 18.966 -20.337 31.329 hybrid contribution -0.104 0.198 0.441 0.494 sum -14.532 19.164 -19.896 31.214 Atomic orbital electron populations 1.22381 0.84858 1.02059 1.01657 1.59140 1.09127 1.14747 1.41472 1.22346 0.99989 0.86646 1.01718 1.18973 0.94650 0.93159 0.89887 1.21857 1.02544 1.01941 0.92127 1.21618 0.94439 0.93739 0.99917 1.21503 0.98465 0.97586 0.96989 1.21606 0.97787 0.98693 0.92096 1.20005 1.03310 0.98810 0.92499 1.18521 0.78355 0.79978 0.89624 1.90809 1.52997 1.53908 1.44286 1.45703 1.51635 1.30997 1.08765 1.21160 0.98451 0.96287 0.83825 1.20828 0.96416 0.93926 0.86396 1.42561 1.60565 1.33881 1.03519 1.19022 1.21341 1.03300 0.93210 0.91769 1.25471 1.00445 0.99058 1.00122 1.69864 1.42555 1.29317 1.21282 0.85458 0.77763 0.79570 0.79329 1.20330 1.21907 1.17984 0.92705 0.93466 0.90436 0.90569 0.92818 0.93486 0.84190 0.82463 0.82241 0.83536 0.75149 0.92433 0.92321 0.94017 0.94121 0.80064 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.34 127.69 1.19 1.89 16 2 N -0.52 -12.53 2.92 -744.36 -2.17 -14.71 16 3 C 0.04 0.76 9.32 127.69 1.19 1.95 16 4 C 0.13 2.85 4.71 38.71 0.18 3.03 16 5 C -0.16 -2.49 8.59 22.38 0.19 -2.30 16 6 C -0.08 -0.87 10.03 22.29 0.22 -0.65 16 7 C -0.13 -1.48 10.02 22.24 0.22 -1.26 16 8 C -0.08 -1.36 9.53 22.52 0.21 -1.14 16 9 C -0.14 -3.37 5.89 -19.98 -0.12 -3.48 16 10 C 0.55 16.57 7.76 86.66 0.67 17.24 16 11 O -0.54 -20.60 15.03 -4.06 -0.06 -20.66 16 12 N -0.72 -19.44 5.51 -466.36 -2.57 -22.01 16 13 C 0.13 4.19 5.79 86.38 0.50 4.69 16 14 C 0.15 5.58 6.37 86.38 0.55 6.13 16 15 N -0.76 -36.04 5.41 -343.43 -1.86 -37.90 16 16 C -0.24 -13.65 10.47 84.04 0.88 -12.77 16 17 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 18 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 19 N -0.98 -62.97 13.97 21.65 0.30 -62.66 16 20 Si 0.95 46.30 27.74 68.60 1.90 48.20 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 0.66 7.11 -2.39 -0.02 0.64 16 26 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.05 1.16 8.12 -2.39 -0.02 1.15 16 29 H 0.05 0.67 7.46 -2.39 -0.02 0.65 16 30 H 0.14 1.59 7.03 -2.91 -0.02 1.57 16 31 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 32 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 33 H 0.15 1.80 6.40 -2.91 -0.02 1.78 16 34 H 0.41 8.50 6.50 -92.71 -0.60 7.90 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.37 16.92 5.53 -92.71 -0.51 16.41 16 40 H 0.26 15.86 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -76.57 332.26 1.79 -74.78 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.12 Total: 24.67 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.37 Total: 10.29 kcal Atomic # 7 Polarization: -130.99 SS G_CDS: -6.30 Total: -137.28 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Total: -76.57 1.79 -74.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153414129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.005 kcal (2) G-P(sol) polarization free energy of solvation -76.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds