Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00059 * 2 1 4 4 C 1.50701 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.38627 * 120.40277 * 0.02562 * 4 3 2 6 6 C 1.38583 * 118.56083 * 179.97438 * 5 4 3 7 7 N 1.32289 * 119.19411 * 0.02562 * 6 5 4 8 8 C 1.32474 * 120.74647 * 0.02562 * 7 6 5 9 9 N 1.38407 * 119.22178 * 179.97438 * 8 7 6 10 10 C 1.46502 * 119.99500 * 0.02562 * 9 8 7 11 11 H 1.09002 * 109.41311 * 35.14695 * 10 9 8 12 12 C 1.52961 * 109.41057 * 155.00246 * 10 9 8 13 13 C 1.53231 * 109.40393 * 183.70565 * 12 10 9 14 14 C 1.51276 * 108.53437 * 305.37252 * 13 12 10 15 15 C 1.37874 * 120.84515 * 231.32587 * 14 13 12 16 16 N 1.31513 * 120.00492 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 119.99706 * 179.97438 * 15 14 13 18 18 H 1.48509 * 109.47008 * 90.00002 * 17 15 14 19 19 H 1.48499 * 109.47675 * 209.99898 * 17 15 14 20 20 H 1.48501 * 109.47170 * 330.00265 * 17 15 14 21 21 C 1.51261 * 118.30046 * 51.34982 * 14 13 12 22 22 C 1.52957 * 109.41534 * 275.35205 * 10 9 8 23 23 N 1.32263 * 120.40010 * 180.02562 * 4 3 2 24 24 H 1.08997 * 109.46742 * 60.00444 * 1 2 3 25 25 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47024 * 299.99710 * 1 2 3 27 27 H 1.08999 * 109.47284 * 59.99892 * 3 2 1 28 28 H 1.09005 * 109.47531 * 300.00457 * 3 2 1 29 29 H 1.07996 * 120.71868 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.39938 * 179.97438 * 6 5 4 31 31 H 0.96993 * 120.00319 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.48517 * 303.68512 * 12 10 9 33 33 H 1.09002 * 109.48390 * 63.71207 * 12 10 9 34 34 H 1.08994 * 109.62685 * 65.08673 * 13 12 10 35 35 H 1.09004 * 109.62499 * 185.46813 * 13 12 10 36 36 H 0.97006 * 120.00108 * 179.97438 * 16 15 14 37 37 H 1.08991 * 109.62939 * 68.36357 * 21 14 13 38 38 H 1.09005 * 109.62788 * 188.74660 * 21 14 13 39 39 H 1.08999 * 109.48383 * 296.28194 * 22 10 9 40 40 H 1.09000 * 109.48118 * 56.32165 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1175 -0.0609 -0.0016 6 6 5.5018 -0.1259 -0.0027 7 7 6.2005 0.9975 -0.0023 8 6 5.5914 2.1739 -0.0003 9 7 6.3534 3.3293 0.0007 10 6 7.8159 3.2422 -0.0011 11 1 8.1269 2.3824 -0.5946 12 6 8.4004 4.5181 -0.6094 13 6 9.9248 4.3886 -0.6963 14 6 10.4580 4.0526 0.6789 15 6 11.4830 4.7857 1.2382 16 7 12.0104 5.7914 0.5748 17 14 12.1228 4.3506 2.9384 18 1 13.2276 3.3658 2.8145 19 1 12.6260 5.5773 3.6071 20 1 11.0237 3.7623 3.7453 21 6 9.8382 2.8915 1.4244 22 6 8.3170 3.0754 1.4344 23 7 4.2698 2.2708 -0.0002 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.5229 -0.9624 -0.0024 30 1 6.0041 -1.0819 -0.0031 31 1 5.9193 4.1966 0.0025 32 1 7.9905 4.6654 -1.6086 33 1 8.1430 5.3712 0.0185 34 1 10.1854 3.5932 -1.3944 35 1 10.3533 5.3308 -1.0381 36 1 12.7313 6.3074 0.9685 37 1 10.0908 1.9575 0.9226 38 1 10.2140 2.8708 2.4474 39 1 8.0617 3.9625 2.0140 40 1 7.8481 2.2000 1.8837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -0.255283 kcal Electronic energy + Delta-G solvation = -21163.398179 eV Core-core repulsion = 17978.061519 eV Total energy + Delta-G solvation = -3185.336660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78610 -38.25544 -37.41702 -34.47425 -33.70755 -32.07601 -30.41072 -29.59744 -28.22347 -26.99619 -26.07625 -23.54884 -22.74435 -21.48276 -21.15041 -19.43294 -17.89544 -17.21343 -16.29928 -16.26219 -15.98482 -15.60927 -14.81938 -14.74082 -14.50120 -14.41908 -13.82669 -13.28234 -13.02724 -12.74445 -12.60691 -12.35186 -12.11242 -11.75867 -11.62928 -11.06266 -10.91461 -10.74082 -10.63019 -10.61206 -10.25296 -10.09135 -9.96841 -9.79970 -9.40250 -8.95241 -8.86573 -8.65713 -8.46145 -7.63890 -6.09378 -4.00013 1.29478 1.46363 2.94555 3.28719 3.36915 3.38264 3.53794 4.09281 4.39521 4.41415 4.61141 4.86625 4.96894 5.03271 5.13560 5.18021 5.21496 5.32217 5.46027 5.55922 5.73999 5.86397 5.93079 6.25228 6.39318 6.51492 6.64160 6.74004 6.76840 6.90345 6.92735 7.02773 7.14439 7.25840 7.44520 7.50320 7.67423 7.73165 7.76919 7.91085 8.39063 8.64540 8.97166 9.55573 11.00141 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040839 B = 0.003433 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.448257 B = 8155.159865 C = 8401.065071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.115 3.885 4 C 0.211 3.789 5 C -0.284 4.284 6 C 0.191 3.809 7 N -0.560 5.560 8 C 0.574 3.426 9 N -0.688 5.688 10 C 0.169 3.831 11 H 0.082 0.918 12 C -0.115 4.115 13 C 0.014 3.986 14 C -0.487 4.487 15 C 0.076 3.924 16 N -0.891 5.891 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.264 1.264 21 C -0.017 4.017 22 C -0.110 4.110 23 N -0.580 5.580 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.164 0.836 31 H 0.407 0.593 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.006 0.994 35 H 0.060 0.940 36 H 0.264 0.736 37 H 0.020 0.980 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.361 -9.487 -1.041 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.038 3.962 4 C 0.062 3.938 5 C -0.310 4.310 6 C 0.023 3.977 7 N -0.283 5.283 8 C 0.217 3.783 9 N -0.322 5.322 10 C 0.066 3.934 11 H 0.100 0.900 12 C -0.154 4.154 13 C -0.023 4.023 14 C -0.506 4.506 15 C -0.127 4.127 16 N -0.529 5.529 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.190 1.190 21 C -0.055 4.055 22 C -0.150 4.150 23 N -0.305 5.305 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.243 0.757 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.314 -8.638 -1.045 20.275 hybrid contribution -0.566 -0.320 0.981 1.176 sum -18.879 -8.958 -0.064 20.897 Atomic orbital electron populations 1.22769 0.80237 1.03061 1.00259 1.87829 1.20074 1.26924 1.95579 1.20929 0.88148 0.84995 1.02167 1.20723 0.94649 0.88696 0.89734 1.22168 0.96563 0.99692 1.12581 1.22965 0.90811 0.96263 0.87703 1.68042 1.40723 0.97768 1.21724 1.19306 0.84296 0.87211 0.87503 1.44892 1.06798 1.03752 1.76712 1.21087 0.74512 0.99969 0.97875 0.89993 1.21959 1.00596 0.95346 0.97480 1.19330 0.88540 0.98695 0.95771 1.20063 1.16591 1.12691 1.01272 1.24843 0.95869 0.94492 0.97483 1.69836 1.25699 1.19347 1.38017 0.86680 0.79135 0.77694 0.84967 1.20387 1.21712 1.18959 1.19778 0.91304 0.97207 0.97254 1.21896 0.98947 0.99158 0.94973 1.67407 1.05477 1.33377 1.24283 0.93809 0.89262 0.93799 0.90613 0.90623 0.83666 0.81867 0.75714 0.94610 0.92726 0.97523 0.92109 0.92617 0.96208 0.94741 0.93337 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.76 9.26 -35.23 -0.33 -4.08 16 3 C 0.11 1.18 6.50 36.01 0.23 1.41 16 4 C 0.21 2.90 6.82 -82.26 -0.56 2.34 16 5 C -0.28 -3.66 9.47 -39.31 -0.37 -4.04 16 6 C 0.19 2.65 11.30 -17.23 -0.19 2.46 16 7 N -0.56 -9.74 9.20 -13.93 -0.13 -9.87 16 8 C 0.57 10.14 8.40 -322.80 -2.71 7.43 16 9 N -0.69 -12.18 5.22 -55.83 -0.29 -12.47 16 10 C 0.17 3.36 2.34 -67.97 -0.16 3.20 16 11 H 0.08 1.74 7.51 -51.93 -0.39 1.35 16 12 C -0.12 -2.40 5.40 -26.63 -0.14 -2.55 16 13 C 0.01 0.36 5.96 -27.48 -0.16 0.20 16 14 C -0.49 -12.79 5.51 -98.92 -0.55 -13.33 16 15 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 16 N -0.89 -25.54 12.73 55.43 0.71 -24.84 16 17 Si 0.89 21.17 27.53 -169.99 -4.68 16.49 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.26 -6.14 6.11 56.52 0.35 -5.80 16 21 C -0.02 -0.41 5.59 -27.49 -0.15 -0.56 16 22 C -0.11 -2.36 5.51 -26.63 -0.15 -2.50 16 23 N -0.58 -9.37 10.40 -10.15 -0.11 -9.47 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.15 1.60 7.11 -52.49 -0.37 1.22 16 30 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.41 6.55 8.71 -40.82 -0.36 6.20 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 1.63 7.08 -51.93 -0.37 1.26 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.03 0.82 4.59 -51.93 -0.24 0.58 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -30.10 324.89 -9.82 -39.92 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.99 Total: 2.10 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.90 Total: -2.67 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.18 Total: -56.65 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.33 Total: -4.08 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.68 Total: 16.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.10 -9.82 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.662 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds