Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00059 * 2 1 4 4 C 1.50701 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.38627 * 120.40277 * 0.02562 * 4 3 2 6 6 C 1.38583 * 118.56083 * 179.97438 * 5 4 3 7 7 N 1.32289 * 119.19411 * 0.02562 * 6 5 4 8 8 C 1.32474 * 120.74647 * 0.02562 * 7 6 5 9 9 N 1.38407 * 119.22178 * 179.97438 * 8 7 6 10 10 C 1.46502 * 119.99500 * 0.02562 * 9 8 7 11 11 H 1.09002 * 109.41311 * 35.14695 * 10 9 8 12 12 C 1.52961 * 109.41057 * 155.00246 * 10 9 8 13 13 C 1.53231 * 109.40393 * 183.70565 * 12 10 9 14 14 C 1.51276 * 108.53437 * 305.37252 * 13 12 10 15 15 C 1.37874 * 120.84515 * 231.32587 * 14 13 12 16 16 N 1.31513 * 120.00492 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 119.99706 * 179.97438 * 15 14 13 18 18 H 1.48509 * 109.47008 * 90.00002 * 17 15 14 19 19 H 1.48499 * 109.47675 * 209.99898 * 17 15 14 20 20 H 1.48501 * 109.47170 * 330.00265 * 17 15 14 21 21 C 1.51261 * 118.30046 * 51.34982 * 14 13 12 22 22 C 1.52957 * 109.41534 * 275.35205 * 10 9 8 23 23 N 1.32263 * 120.40010 * 180.02562 * 4 3 2 24 24 H 1.08997 * 109.46742 * 60.00444 * 1 2 3 25 25 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47024 * 299.99710 * 1 2 3 27 27 H 1.08999 * 109.47284 * 59.99892 * 3 2 1 28 28 H 1.09005 * 109.47531 * 300.00457 * 3 2 1 29 29 H 1.07996 * 120.71868 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.39938 * 179.97438 * 6 5 4 31 31 H 0.96993 * 120.00319 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.48517 * 303.68512 * 12 10 9 33 33 H 1.09002 * 109.48390 * 63.71207 * 12 10 9 34 34 H 1.08994 * 109.62685 * 65.08673 * 13 12 10 35 35 H 1.09004 * 109.62499 * 185.46813 * 13 12 10 36 36 H 0.97006 * 120.00108 * 179.97438 * 16 15 14 37 37 H 1.08991 * 109.62939 * 68.36357 * 21 14 13 38 38 H 1.09005 * 109.62788 * 188.74660 * 21 14 13 39 39 H 1.08999 * 109.48383 * 296.28194 * 22 10 9 40 40 H 1.09000 * 109.48118 * 56.32165 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1175 -0.0609 -0.0016 6 6 5.5018 -0.1259 -0.0027 7 7 6.2005 0.9975 -0.0023 8 6 5.5914 2.1739 -0.0003 9 7 6.3534 3.3293 0.0007 10 6 7.8159 3.2422 -0.0011 11 1 8.1269 2.3824 -0.5946 12 6 8.4004 4.5181 -0.6094 13 6 9.9248 4.3886 -0.6963 14 6 10.4580 4.0526 0.6789 15 6 11.4830 4.7857 1.2382 16 7 12.0104 5.7914 0.5748 17 14 12.1228 4.3506 2.9384 18 1 13.2276 3.3658 2.8145 19 1 12.6260 5.5773 3.6071 20 1 11.0237 3.7623 3.7453 21 6 9.8382 2.8915 1.4244 22 6 8.3170 3.0754 1.4344 23 7 4.2698 2.2708 -0.0002 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.5229 -0.9624 -0.0024 30 1 6.0041 -1.0819 -0.0031 31 1 5.9193 4.1966 0.0025 32 1 7.9905 4.6654 -1.6086 33 1 8.1430 5.3712 0.0185 34 1 10.1854 3.5932 -1.3944 35 1 10.3533 5.3308 -1.0381 36 1 12.7313 6.3074 0.9685 37 1 10.0908 1.9575 0.9226 38 1 10.2140 2.8708 2.4474 39 1 8.0617 3.9625 2.0140 40 1 7.8481 2.2000 1.8837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -17.623268 kcal Electronic energy + Delta-G solvation = -21164.151311 eV Core-core repulsion = 17978.061519 eV Total energy + Delta-G solvation = -3186.089793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.93469 -39.31179 -38.70901 -36.03732 -34.82660 -33.82991 -31.85798 -31.34494 -29.06831 -28.69737 -26.74945 -24.74439 -24.21793 -23.27626 -22.62323 -21.13782 -19.14462 -18.30543 -17.93806 -17.02143 -16.94195 -16.67693 -16.41217 -16.04228 -15.88720 -15.67376 -15.02440 -14.81246 -14.55737 -14.26351 -13.98762 -13.69425 -13.48956 -13.30836 -12.78558 -12.74058 -12.54132 -12.35470 -11.96770 -11.87723 -11.73377 -11.67323 -11.49865 -11.20118 -10.84250 -10.62984 -10.56448 -10.45295 -10.03825 -8.95042 -8.16138 -6.10235 0.20869 0.32600 1.39432 1.42218 1.50193 1.84386 2.41737 2.59050 2.94387 3.11689 3.46902 3.62047 3.92608 4.06959 4.17168 4.23914 4.37285 4.47070 4.53840 4.56848 4.63346 4.63453 4.71702 4.81145 4.93023 4.94084 4.99320 5.08365 5.15353 5.25629 5.27349 5.50790 5.58223 5.63243 5.76022 5.82247 5.92716 6.13364 6.25782 6.35852 6.59535 6.95338 7.43299 7.47875 8.94548 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040839 B = 0.003433 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.448257 B = 8155.159865 C = 8401.065071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.120 3.880 4 C 0.197 3.803 5 C -0.272 4.272 6 C 0.183 3.817 7 N -0.590 5.590 8 C 0.556 3.444 9 N -0.691 5.691 10 C 0.188 3.812 11 H 0.069 0.931 12 C -0.103 4.103 13 C 0.011 3.989 14 C -0.497 4.497 15 C 0.023 3.977 16 N -0.930 5.930 17 Si 0.939 3.061 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.252 1.252 21 C -0.017 4.017 22 C -0.101 4.101 23 N -0.590 5.590 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.196 0.804 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.001 0.999 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.021 0.979 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.664 -11.204 -0.403 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.043 3.957 4 C 0.049 3.951 5 C -0.297 4.297 6 C 0.017 3.983 7 N -0.314 5.314 8 C 0.199 3.801 9 N -0.326 5.326 10 C 0.083 3.917 11 H 0.088 0.912 12 C -0.141 4.141 13 C -0.027 4.027 14 C -0.517 4.517 15 C -0.175 4.175 16 N -0.570 5.570 17 Si 0.765 3.235 18 H -0.200 1.200 19 H -0.219 1.219 20 H -0.177 1.177 21 C -0.055 4.055 22 C -0.140 4.140 23 N -0.315 5.315 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.185 0.815 30 H 0.213 0.787 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.675 -10.404 -0.405 23.149 hybrid contribution 0.012 0.085 0.709 0.714 sum -20.663 -10.319 0.304 23.099 Atomic orbital electron populations 1.22990 0.78329 1.04354 1.01223 1.87786 1.22073 1.26471 1.95756 1.20914 0.85936 0.85669 1.03147 1.21385 0.96354 0.88518 0.88805 1.22456 0.96407 1.00290 1.10568 1.23563 0.91510 0.96504 0.86759 1.68041 1.41911 0.98540 1.22908 1.19400 0.84973 0.87192 0.88513 1.44518 1.05658 1.04423 1.78002 1.20611 0.76066 0.98524 0.96468 0.91244 1.21729 0.97824 0.95900 0.98683 1.19279 0.91250 0.96927 0.95225 1.20620 1.16191 1.12984 1.01866 1.25582 0.96429 0.94708 1.00788 1.69964 1.26664 1.20784 1.39631 0.85837 0.78893 0.77391 0.81360 1.19999 1.21854 1.17668 1.19768 0.92860 0.96105 0.96805 1.21755 0.97166 0.99111 0.95995 1.67427 1.04919 1.34492 1.24687 0.92819 0.87871 0.92869 0.89588 0.89497 0.81464 0.78738 0.75015 0.92784 0.93088 0.98025 0.94954 0.92798 0.96083 0.94718 0.93865 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -6.64 9.26 -148.98 -1.38 -8.02 16 3 C 0.12 2.16 6.50 71.24 0.46 2.63 16 4 C 0.20 4.99 6.82 42.59 0.29 5.28 16 5 C -0.27 -6.30 9.47 22.45 0.21 -6.09 16 6 C 0.18 4.66 11.30 84.71 0.96 5.62 16 7 N -0.59 -19.70 9.20 -198.00 -1.82 -21.53 16 8 C 0.56 19.00 8.40 261.48 2.20 21.19 16 9 N -0.69 -23.82 5.22 -330.56 -1.73 -25.54 16 10 C 0.19 7.35 2.34 44.96 0.11 7.45 16 11 H 0.07 2.92 7.51 -2.39 -0.02 2.90 16 12 C -0.10 -4.27 5.40 30.66 0.17 -4.11 16 13 C 0.01 0.56 5.96 30.11 0.18 0.74 16 14 C -0.50 -26.30 5.51 -16.17 -0.09 -26.39 16 15 C 0.02 1.28 5.46 84.65 0.46 1.74 16 16 N -0.93 -54.66 12.73 21.45 0.27 -54.39 16 17 Si 0.94 43.50 27.53 68.60 1.89 45.39 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.25 -11.07 6.11 99.48 0.61 -10.47 16 21 C -0.02 -0.81 5.59 30.10 0.17 -0.64 16 22 C -0.10 -4.21 5.51 30.66 0.17 -4.04 16 23 N -0.59 -18.14 10.40 -186.03 -1.93 -20.07 16 24 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.17 3.10 7.11 -2.91 -0.02 3.08 16 30 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.41 12.94 8.71 -92.71 -0.81 12.13 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.03 1.78 7.08 -2.38 -0.02 1.77 16 36 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.03 1.59 4.59 -2.38 -0.01 1.58 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.66 324.89 1.97 -62.69 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.14 Total: 16.58 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.53 Total: 4.89 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.21 Total: -121.53 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -1.38 Total: -8.02 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.89 Total: 45.39 kcal Total: -64.66 1.97 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.070 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds