Wall clock time and date at job start Mon Mar 30 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99805 * 2 1 4 4 C 1.52993 * 109.46915 * 209.99611 * 3 2 1 5 5 C 1.53000 * 109.47454 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46742 * 59.99854 * 5 4 3 7 7 N 1.46499 * 109.47041 * 60.00765 * 6 5 4 8 8 C 1.38827 * 120.00062 * 154.99905 * 7 6 5 9 9 C 1.39961 * 119.97276 * 0.02562 * 8 7 6 10 10 N 1.32123 * 120.31990 * 179.97438 * 9 8 7 11 11 C 1.31939 * 120.27112 * 359.71234 * 10 9 8 12 12 C 1.40676 * 119.93158 * 0.56340 * 11 10 9 13 13 C 1.41271 * 120.15665 * 179.70719 * 12 11 10 14 14 H 1.08005 * 119.99723 * 5.99066 * 13 12 11 15 15 C 1.40058 * 120.00062 * 185.99858 * 13 12 11 16 16 N 1.30723 * 120.00226 * 353.72608 * 15 13 12 17 17 Si 1.86801 * 119.99627 * 173.72974 * 15 13 12 18 18 H 1.48506 * 109.47035 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47151 * 299.99392 * 17 15 13 20 20 H 1.48500 * 109.47499 * 59.99959 * 17 15 13 21 21 N 1.32244 * 119.97016 * 179.97438 * 8 7 6 22 22 C 1.53000 * 109.47611 * 300.00605 * 6 5 4 23 23 C 1.52994 * 109.47278 * 59.99788 * 22 6 5 24 24 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47342 * 299.99854 * 1 2 3 26 26 H 1.09000 * 109.46927 * 60.00232 * 1 2 3 27 27 H 1.08991 * 109.47289 * 329.99926 * 3 2 1 28 28 H 1.09003 * 109.47250 * 60.00317 * 4 3 2 29 29 H 1.09004 * 109.47471 * 300.00447 * 4 3 2 30 30 H 1.09004 * 109.47039 * 300.00579 * 5 4 3 31 31 H 1.08992 * 109.47696 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47144 * 179.97438 * 6 5 4 33 33 H 0.96999 * 119.99949 * 334.98960 * 7 6 5 34 34 H 1.08003 * 119.83875 * 359.96437 * 9 8 7 35 35 H 1.07993 * 120.03143 * 180.29597 * 11 10 9 36 36 H 0.97001 * 120.00122 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47159 * 180.02562 * 22 6 5 38 38 H 1.09005 * 109.46497 * 299.99722 * 22 6 5 39 39 H 1.08992 * 109.47413 * 180.02562 * 23 22 6 40 40 H 1.09004 * 109.47091 * 60.00052 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7211 5 6 3.9816 2.6608 -0.7207 6 6 4.1890 3.1262 0.7220 7 7 5.0829 2.1931 1.4123 8 6 5.8290 2.6235 2.5011 9 6 5.7263 3.9489 2.9392 10 7 6.4327 4.3657 3.9749 11 6 7.2373 3.5342 4.6091 12 6 7.3535 2.2013 4.1746 13 6 8.2183 1.3087 4.8463 14 1 8.7179 1.6196 5.7519 15 6 8.4278 0.0206 4.3377 16 7 7.7321 -0.3989 3.3135 17 14 9.7013 -1.0978 5.1230 18 1 9.7300 -2.3968 4.4039 19 1 11.0391 -0.4582 5.0420 20 1 9.3477 -1.3274 6.5469 21 7 6.6354 1.7806 3.1241 22 6 2.8403 3.1683 1.4433 23 6 2.2177 1.7708 1.4428 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3451 1.9994 -0.5138 28 1 3.2112 0.9314 -1.7488 29 1 4.0242 0.5693 -0.2073 30 1 3.3164 3.3551 -1.2342 31 1 4.9421 2.6309 -1.2348 32 1 4.6330 4.1217 0.7225 33 1 5.1535 1.2746 1.1087 34 1 5.0664 4.6342 2.4279 35 1 7.8094 3.8778 5.4582 36 1 7.8775 -1.2909 2.9611 37 1 2.9881 3.5003 2.4710 38 1 2.1753 3.8627 0.9297 39 1 1.2568 1.8009 1.9562 40 1 2.8829 1.0765 1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157808530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:09 Heat of formation + Delta-G solvation = -12.204747 kcal Electronic energy + Delta-G solvation = -21847.105089 eV Core-core repulsion = 18661.250261 eV Total energy + Delta-G solvation = -3185.854828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67720 -38.60426 -36.92170 -33.99490 -33.38991 -31.44102 -30.76678 -29.60390 -27.93355 -26.35038 -25.78975 -22.70959 -22.40243 -21.97693 -21.27905 -19.14323 -17.30594 -16.79170 -16.63618 -15.68898 -15.35654 -15.11903 -14.93109 -14.69057 -14.38960 -13.95503 -13.66220 -13.10897 -12.95796 -12.89731 -12.35966 -12.09741 -11.92952 -11.65816 -11.45357 -11.32540 -11.17296 -11.08366 -10.81695 -10.61969 -10.42399 -10.31729 -10.28052 -9.80471 -9.58741 -9.37596 -9.33328 -8.30977 -7.33579 -6.64564 -6.40200 -4.61747 2.75883 3.06160 3.08189 3.16633 3.32723 3.69784 3.90446 4.12980 4.74007 4.76743 4.81427 5.03704 5.16147 5.20862 5.29027 5.33545 5.41263 5.50928 5.56003 5.58924 5.67560 5.90987 5.95037 6.03910 6.06772 6.20350 6.23902 6.26366 6.39080 6.45633 6.51353 6.61558 6.85742 7.08325 7.18816 7.21767 7.65567 8.01498 8.11123 8.50801 8.60776 8.91657 9.46740 10.06058 10.23278 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.004971 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.495281 B = 5631.324774 C = 6566.953727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.092 3.908 4 C -0.117 4.117 5 C -0.121 4.121 6 C 0.161 3.839 7 N -0.722 5.722 8 C 0.375 3.625 9 C -0.171 4.171 10 N -0.408 5.408 11 C -0.111 4.111 12 C 0.247 3.753 13 C -0.418 4.418 14 H 0.089 0.911 15 C 0.069 3.931 16 N -0.709 5.709 17 Si 0.910 3.090 18 H -0.277 1.277 19 H -0.263 1.263 20 H -0.264 1.264 21 N -0.509 5.509 22 C -0.132 4.132 23 C -0.136 4.136 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.274 0.726 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 0.410 -8.399 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.035 3.965 4 C -0.155 4.155 5 C -0.159 4.159 6 C 0.054 3.946 7 N -0.360 5.360 8 C 0.132 3.868 9 C -0.333 4.333 10 N -0.120 5.120 11 C -0.281 4.281 12 C 0.119 3.881 13 C -0.451 4.451 14 H 0.107 0.893 15 C -0.158 4.158 16 N -0.330 5.330 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.188 1.188 20 H -0.188 1.188 21 N -0.236 5.236 22 C -0.171 4.171 23 C -0.174 4.174 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.481 0.249 -8.615 13.569 hybrid contribution 0.270 -0.698 0.239 0.786 sum -10.210 -0.449 -8.376 13.214 Atomic orbital electron populations 1.22738 0.81652 1.02406 0.99653 1.87935 1.19152 1.28295 1.95073 1.22184 0.94566 0.83883 0.95912 1.21562 0.95475 0.97918 1.00498 1.21767 1.01414 0.96272 0.96452 1.20705 0.89498 0.94052 0.90352 1.44256 1.46330 1.12969 1.32411 1.19530 0.89451 0.90497 0.87364 1.21946 1.12576 0.94399 1.04370 1.67496 1.02827 1.36900 1.04768 1.22871 1.06922 0.92862 1.05438 1.19068 0.89804 0.90839 0.88411 1.19582 1.21062 0.96016 1.08436 0.89306 1.26111 0.96343 0.98675 0.94632 1.70096 1.30112 1.16430 1.16366 0.86350 0.81255 0.78900 0.80141 1.20231 1.18804 1.18813 1.69052 1.10892 1.32033 1.11574 1.21996 0.96742 0.96214 1.02150 1.21937 1.00985 0.97974 0.96514 0.89941 0.94196 0.94386 0.92576 0.91457 0.90599 0.90893 0.90670 0.90247 0.76831 0.86253 0.85436 0.91459 0.90846 0.91931 0.92557 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.22 10.35 -35.23 -0.36 -5.59 16 3 C 0.09 1.14 2.61 -26.73 -0.07 1.07 16 4 C -0.12 -1.44 5.40 -26.73 -0.14 -1.59 16 5 C -0.12 -1.42 5.61 -26.73 -0.15 -1.57 16 6 C 0.16 2.37 2.47 -67.93 -0.17 2.20 16 7 N -0.72 -13.86 4.39 -53.79 -0.24 -14.10 16 8 C 0.38 9.04 7.64 -155.01 -1.19 7.86 16 9 C -0.17 -4.09 10.01 -16.78 -0.17 -4.26 16 10 N -0.41 -10.50 10.47 -12.11 -0.13 -10.63 16 11 C -0.11 -2.91 10.97 -16.59 -0.18 -3.09 16 12 C 0.25 6.84 6.54 -84.84 -0.55 6.28 16 13 C -0.42 -11.06 9.15 -37.75 -0.35 -11.41 16 14 H 0.09 2.16 7.86 -52.48 -0.41 1.75 16 15 C 0.07 1.72 5.49 -17.34 -0.10 1.63 16 16 N -0.71 -18.51 11.51 55.55 0.64 -17.87 16 17 Si 0.91 18.29 29.56 -169.99 -5.03 13.26 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 N -0.51 -13.93 8.10 -10.14 -0.08 -14.02 16 22 C -0.13 -1.81 5.53 -26.73 -0.15 -1.96 16 23 C -0.14 -1.90 5.38 -26.73 -0.14 -2.04 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 26 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 27 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.09 6.50 -51.93 -0.34 0.76 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.20 6.46 -51.93 -0.34 0.87 16 33 H 0.40 7.75 6.99 -40.82 -0.29 7.47 16 34 H 0.12 2.51 6.07 -52.48 -0.32 2.20 16 35 H 0.13 3.06 8.06 -52.49 -0.42 2.64 16 36 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 37 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.73 7.87 -51.93 -0.41 0.33 16 40 H 0.08 1.36 7.60 -51.93 -0.39 0.96 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -30.25 321.15 -8.41 -38.66 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.79 Total: 10.91 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.26 Total: -5.47 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.19 Total: -56.62 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.36 Total: -5.59 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.25 -8.41 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157808530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.456 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds