Wall clock time and date at job start Mon Mar 30 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99805 * 2 1 4 4 C 1.52993 * 109.46915 * 209.99611 * 3 2 1 5 5 C 1.53000 * 109.47454 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46742 * 59.99854 * 5 4 3 7 7 N 1.46499 * 109.47041 * 60.00765 * 6 5 4 8 8 C 1.38827 * 120.00062 * 154.99905 * 7 6 5 9 9 C 1.39961 * 119.97276 * 0.02562 * 8 7 6 10 10 N 1.32123 * 120.31990 * 179.97438 * 9 8 7 11 11 C 1.31939 * 120.27112 * 359.71234 * 10 9 8 12 12 C 1.40676 * 119.93158 * 0.56340 * 11 10 9 13 13 C 1.41271 * 120.15665 * 179.70719 * 12 11 10 14 14 H 1.08005 * 119.99723 * 5.99066 * 13 12 11 15 15 C 1.40058 * 120.00062 * 185.99858 * 13 12 11 16 16 N 1.30723 * 120.00226 * 353.72608 * 15 13 12 17 17 Si 1.86801 * 119.99627 * 173.72974 * 15 13 12 18 18 H 1.48506 * 109.47035 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47151 * 299.99392 * 17 15 13 20 20 H 1.48500 * 109.47499 * 59.99959 * 17 15 13 21 21 N 1.32244 * 119.97016 * 179.97438 * 8 7 6 22 22 C 1.53000 * 109.47611 * 300.00605 * 6 5 4 23 23 C 1.52994 * 109.47278 * 59.99788 * 22 6 5 24 24 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47342 * 299.99854 * 1 2 3 26 26 H 1.09000 * 109.46927 * 60.00232 * 1 2 3 27 27 H 1.08991 * 109.47289 * 329.99926 * 3 2 1 28 28 H 1.09003 * 109.47250 * 60.00317 * 4 3 2 29 29 H 1.09004 * 109.47471 * 300.00447 * 4 3 2 30 30 H 1.09004 * 109.47039 * 300.00579 * 5 4 3 31 31 H 1.08992 * 109.47696 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47144 * 179.97438 * 6 5 4 33 33 H 0.96999 * 119.99949 * 334.98960 * 7 6 5 34 34 H 1.08003 * 119.83875 * 359.96437 * 9 8 7 35 35 H 1.07993 * 120.03143 * 180.29597 * 11 10 9 36 36 H 0.97001 * 120.00122 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47159 * 180.02562 * 22 6 5 38 38 H 1.09005 * 109.46497 * 299.99722 * 22 6 5 39 39 H 1.08992 * 109.47413 * 180.02562 * 23 22 6 40 40 H 1.09004 * 109.47091 * 60.00052 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7211 5 6 3.9816 2.6608 -0.7207 6 6 4.1890 3.1262 0.7220 7 7 5.0829 2.1931 1.4123 8 6 5.8290 2.6235 2.5011 9 6 5.7263 3.9489 2.9392 10 7 6.4327 4.3657 3.9749 11 6 7.2373 3.5342 4.6091 12 6 7.3535 2.2013 4.1746 13 6 8.2183 1.3087 4.8463 14 1 8.7179 1.6196 5.7519 15 6 8.4278 0.0206 4.3377 16 7 7.7321 -0.3989 3.3135 17 14 9.7013 -1.0978 5.1230 18 1 9.7300 -2.3968 4.4039 19 1 11.0391 -0.4582 5.0420 20 1 9.3477 -1.3274 6.5469 21 7 6.6354 1.7806 3.1241 22 6 2.8403 3.1683 1.4433 23 6 2.2177 1.7708 1.4428 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3451 1.9994 -0.5138 28 1 3.2112 0.9314 -1.7488 29 1 4.0242 0.5693 -0.2073 30 1 3.3164 3.3551 -1.2342 31 1 4.9421 2.6309 -1.2348 32 1 4.6330 4.1217 0.7225 33 1 5.1535 1.2746 1.1087 34 1 5.0664 4.6342 2.4279 35 1 7.8094 3.8778 5.4582 36 1 7.8775 -1.2909 2.9611 37 1 2.9881 3.5003 2.4710 38 1 2.1753 3.8627 0.9297 39 1 1.2568 1.8009 1.9562 40 1 2.8829 1.0765 1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157808530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:09 Heat of formation + Delta-G solvation = -31.683927 kcal Electronic energy + Delta-G solvation = -21847.949769 eV Core-core repulsion = 18661.250261 eV Total energy + Delta-G solvation = -3186.699509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09407 -40.15159 -38.07784 -35.86058 -34.99224 -33.28221 -31.83231 -31.15129 -29.36607 -27.74714 -27.21311 -24.34272 -23.70358 -23.42685 -22.75758 -20.46602 -19.11921 -18.45419 -17.65089 -17.12163 -16.95852 -16.59770 -16.33692 -16.09171 -15.69822 -15.23154 -15.03717 -14.69662 -14.47281 -14.14214 -13.42966 -13.28640 -13.25777 -13.08853 -13.05579 -12.87959 -12.53937 -12.30198 -12.20815 -12.04740 -11.95204 -11.62741 -11.46275 -11.36083 -11.30859 -11.16812 -10.39865 -10.18821 -9.28888 -8.41151 -8.30682 -6.62257 0.87959 1.29550 1.41485 1.54044 1.58303 2.21317 2.56477 2.85222 2.85421 3.73616 3.75312 3.95055 4.01125 4.12751 4.23260 4.23805 4.35538 4.44986 4.48872 4.52419 4.53218 4.58208 4.62649 4.70074 4.83970 4.92665 4.98912 5.03030 5.06926 5.17730 5.19406 5.23405 5.24378 5.38332 5.40629 5.76173 6.10982 6.31134 6.34633 6.67268 6.75109 7.04516 7.49841 8.12622 8.36599 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.004971 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.495281 B = 5631.324774 C = 6566.953727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.096 3.904 4 C -0.116 4.116 5 C -0.110 4.110 6 C 0.152 3.848 7 N -0.712 5.712 8 C 0.369 3.631 9 C -0.172 4.172 10 N -0.417 5.417 11 C -0.140 4.140 12 C 0.218 3.782 13 C -0.446 4.446 14 H 0.099 0.901 15 C 0.024 3.976 16 N -0.744 5.744 17 Si 0.992 3.008 18 H -0.269 1.269 19 H -0.257 1.257 20 H -0.256 1.256 21 N -0.543 5.543 22 C -0.125 4.125 23 C -0.132 4.132 24 H 0.091 0.909 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.392 0.608 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.281 0.719 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 0.517 -9.850 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.039 3.961 4 C -0.153 4.153 5 C -0.148 4.148 6 C 0.046 3.954 7 N -0.347 5.347 8 C 0.123 3.877 9 C -0.335 4.335 10 N -0.129 5.129 11 C -0.308 4.308 12 C 0.090 3.910 13 C -0.479 4.479 14 H 0.117 0.883 15 C -0.199 4.199 16 N -0.365 5.365 17 Si 0.812 3.188 18 H -0.193 1.193 19 H -0.181 1.181 20 H -0.180 1.180 21 N -0.271 5.271 22 C -0.164 4.164 23 C -0.170 4.170 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.227 0.773 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.529 0.382 -10.081 15.320 hybrid contribution 0.434 -0.712 0.598 1.027 sum -11.095 -0.330 -9.482 14.599 Atomic orbital electron populations 1.22946 0.79867 1.03509 1.00782 1.87908 1.21263 1.29035 1.95147 1.22182 0.95083 0.84234 0.94622 1.21554 0.95029 0.97647 1.01102 1.21733 1.02286 0.96587 0.94159 1.21092 0.89044 0.93163 0.92053 1.44493 1.45731 1.13575 1.30923 1.19884 0.89146 0.90569 0.88086 1.22394 1.12304 0.94900 1.03911 1.67499 1.03025 1.37039 1.05318 1.22999 1.08335 0.92875 1.06605 1.19501 0.90561 0.91809 0.89155 1.20014 1.21569 0.97125 1.09170 0.88267 1.27080 0.98257 0.99673 0.94879 1.70194 1.31555 1.17185 1.17602 0.85114 0.78006 0.76537 0.79188 1.19338 1.18138 1.18005 1.69058 1.12255 1.33322 1.12419 1.21933 0.96754 0.96811 1.00857 1.21881 1.00265 0.97141 0.97758 0.89068 0.93892 0.92302 0.89508 0.89686 0.93668 0.87092 0.90801 0.90141 0.77268 0.83399 0.84363 0.90826 0.93607 0.87989 0.91794 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.66 16 2 O -0.41 -10.59 10.35 -148.98 -1.54 -12.13 16 3 C 0.10 2.16 2.61 30.59 0.08 2.24 16 4 C -0.12 -2.64 5.40 30.59 0.17 -2.47 16 5 C -0.11 -2.27 5.61 30.59 0.17 -2.10 16 6 C 0.15 4.23 2.47 44.99 0.11 4.34 16 7 N -0.71 -27.71 4.39 -324.08 -1.42 -29.14 16 8 C 0.37 18.21 7.64 133.37 1.02 19.23 16 9 C -0.17 -8.29 10.01 85.07 0.85 -7.43 16 10 N -0.42 -21.82 10.47 -192.24 -2.01 -23.84 16 11 C -0.14 -7.59 10.97 85.27 0.94 -6.66 16 12 C 0.22 12.51 6.54 40.15 0.26 12.78 16 13 C -0.45 -24.30 9.15 23.46 0.21 -24.08 16 14 H 0.10 4.95 7.86 -2.91 -0.02 4.93 16 15 C 0.02 1.24 5.49 85.30 0.47 1.71 16 16 N -0.74 -39.85 11.51 21.84 0.25 -39.60 16 17 Si 0.99 37.58 29.56 68.60 2.03 39.61 16 18 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 21 N -0.54 -30.84 8.10 -186.00 -1.51 -32.35 16 22 C -0.12 -3.19 5.53 30.59 0.17 -3.02 16 23 C -0.13 -3.58 5.38 30.60 0.16 -3.41 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 0.71 7.87 -2.39 -0.02 0.69 16 26 H 0.06 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.09 1.46 7.79 -2.39 -0.02 1.44 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.31 6.50 -2.38 -0.02 1.29 16 30 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.26 6.46 -2.38 -0.02 2.25 16 33 H 0.39 15.91 6.99 -92.71 -0.65 15.27 16 34 H 0.15 6.09 6.07 -2.91 -0.02 6.07 16 35 H 0.14 6.89 8.06 -2.91 -0.02 6.87 16 36 H 0.28 13.62 8.29 -92.71 -0.77 12.85 16 37 H 0.05 1.43 7.67 -2.39 -0.02 1.41 16 38 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.06 1.59 7.87 -2.39 -0.02 1.58 16 40 H 0.04 1.27 7.60 -2.38 -0.02 1.25 16 Total: -1.00 -68.43 321.15 2.04 -66.39 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.40 Total: 38.27 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.84 Total: -7.22 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -4.69 Total: -124.92 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.54 Total: -12.13 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -68.43 2.04 -66.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157808530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.710 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds