Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47016 * 110.99598 * 2 1 4 4 C 1.53098 * 109.25797 * 177.60911 * 3 2 1 5 5 O 1.43025 * 109.26006 * 56.84334 * 4 3 2 6 6 C 1.43011 * 113.73585 * 301.33301 * 5 4 3 7 7 C 1.47019 * 110.99931 * 236.31812 * 2 1 3 8 8 H 1.08997 * 109.47231 * 62.43265 * 7 2 1 9 9 C 1.52998 * 109.54370 * 302.30262 * 7 2 1 10 10 N 1.46500 * 109.47508 * 306.26913 * 9 7 2 11 11 C 1.39075 * 120.00478 * 184.19378 * 10 9 7 12 12 C 1.38746 * 119.65262 * 359.73095 * 11 10 9 13 13 C 1.40781 * 118.66871 * 179.79801 * 12 11 10 14 14 C 1.41544 * 120.99846 * 180.21515 * 13 12 11 15 15 H 1.08010 * 119.99939 * 332.62069 * 14 13 12 16 16 C 1.40020 * 120.00532 * 152.61987 * 14 13 12 17 17 N 1.30743 * 120.00567 * 161.07216 * 16 14 13 18 18 Si 1.86802 * 119.99611 * 341.06957 * 16 14 13 19 19 H 1.48501 * 109.47279 * 95.04630 * 18 16 14 20 20 H 1.48507 * 109.47060 * 215.04236 * 18 16 14 21 21 H 1.48492 * 109.47364 * 335.04407 * 18 16 14 22 22 C 1.41196 * 118.00993 * 0.46135 * 13 12 11 23 23 C 1.36555 * 119.14696 * 359.75273 * 22 13 12 24 24 N 1.32099 * 121.26684 * 0.02562 * 23 22 13 25 25 H 1.08997 * 109.47188 * 66.03277 * 1 2 3 26 26 H 1.08998 * 109.46534 * 186.02663 * 1 2 3 27 27 H 1.08997 * 109.47337 * 306.02550 * 1 2 3 28 28 H 1.08998 * 109.51239 * 57.66821 * 3 2 1 29 29 H 1.09007 * 109.50389 * 297.53689 * 3 2 1 30 30 H 1.09002 * 109.50472 * 296.91244 * 4 3 2 31 31 H 1.08999 * 109.51309 * 176.78152 * 4 3 2 32 32 H 1.09000 * 109.50345 * 178.60332 * 6 5 4 33 33 H 1.09004 * 109.51243 * 298.68883 * 6 5 4 34 34 H 1.09002 * 109.47095 * 66.27414 * 9 7 2 35 35 H 1.08997 * 109.47322 * 186.26627 * 9 7 2 36 36 H 0.97006 * 119.99757 * 4.19515 * 10 9 7 37 37 H 1.07997 * 120.66922 * 0.02562 * 12 11 10 38 38 H 0.97003 * 120.00456 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.42517 * 179.73230 * 22 13 12 40 40 H 1.07995 * 119.36943 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 0.0603 5 8 4.0175 0.5575 -1.0403 6 6 3.5250 -0.7848 -1.0708 7 6 1.9959 -0.7612 -1.1421 8 1 1.6821 -0.2858 -2.0714 9 6 1.4600 -2.1934 -1.0937 10 7 1.7553 -2.7814 0.2153 11 6 1.4406 -4.1125 0.4668 12 6 0.8418 -4.8756 -0.5254 13 6 0.5361 -6.2219 -0.2499 14 6 -0.0708 -7.0463 -1.2274 15 1 -0.6944 -6.6075 -1.9923 16 6 0.1374 -8.4308 -1.2028 17 7 -0.6815 -9.2264 -1.8398 18 14 1.5852 -9.1409 -0.2600 19 1 1.1421 -9.5416 1.0995 20 1 2.1098 -10.3292 -0.9799 21 1 2.6548 -8.1167 -0.1502 22 6 0.8481 -6.7237 1.0325 23 6 1.4332 -5.8952 1.9467 24 7 1.7108 -4.6374 1.6532 25 1 -0.3633 0.4174 -0.9390 26 1 -0.3632 -1.0220 0.1079 27 1 -0.3634 0.6044 0.8311 28 1 1.6132 1.9093 0.8681 29 1 1.6827 1.8825 -0.9111 30 1 3.8385 0.8645 0.9964 31 1 3.9222 2.3400 0.0029 32 1 3.9223 -1.2984 -1.9464 33 1 3.8392 -1.3085 -0.1680 34 1 0.3816 -2.1834 -1.2526 35 1 1.9366 -2.7864 -1.8742 36 1 2.1704 -2.2422 0.9066 37 1 0.6182 -4.4464 -1.4908 38 1 -0.5375 -10.1856 -1.8225 39 1 0.6265 -7.7496 1.2871 40 1 1.6730 -6.2751 2.9287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158707562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = -1.749081 kcal Electronic energy + Delta-G solvation = -21647.336738 eV Core-core repulsion = 18461.935302 eV Total energy + Delta-G solvation = -3185.401436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03046 -38.59547 -36.37066 -34.85888 -33.79741 -31.70594 -31.10904 -29.11961 -28.12401 -26.10385 -25.72428 -24.28075 -22.90271 -21.41001 -21.03447 -19.78896 -17.73594 -16.62921 -16.54717 -16.18253 -15.61396 -15.49649 -15.10160 -14.75449 -14.45081 -14.09176 -13.90309 -13.70999 -13.42280 -13.05205 -12.76181 -12.58771 -12.45497 -12.15271 -11.89622 -11.53949 -11.39116 -11.12730 -10.97306 -10.75668 -10.66166 -10.56906 -9.81833 -9.72435 -9.36595 -9.03058 -8.56280 -8.16605 -8.01598 -7.00613 -6.65059 -4.64617 2.65950 2.85574 3.13843 3.23609 3.35267 3.52897 3.70122 3.97944 4.05068 4.60756 4.64890 4.71815 4.76227 4.97362 5.08277 5.13239 5.36392 5.39485 5.43050 5.53420 5.58346 5.65064 5.73335 5.81939 5.87890 5.90901 6.00415 6.49572 6.56016 6.72949 6.73809 6.78549 6.80182 6.96915 7.12883 7.31089 7.67256 7.80481 8.06913 8.27995 8.57769 8.65309 8.78468 9.57582 10.01084 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.004024 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.731024 B = 6956.669188 C = 7048.811333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.533 5.533 3 C 0.018 3.982 4 C 0.062 3.938 5 O -0.386 6.386 6 C 0.068 3.932 7 C 0.039 3.961 8 H 0.061 0.939 9 C 0.147 3.853 10 N -0.730 5.730 11 C 0.407 3.593 12 C -0.329 4.329 13 C 0.139 3.861 14 C -0.442 4.442 15 H 0.090 0.910 16 C 0.088 3.912 17 N -0.802 5.802 18 Si 0.919 3.081 19 H -0.269 1.269 20 H -0.292 1.292 21 H -0.246 1.246 22 C -0.320 4.320 23 C 0.150 3.850 24 N -0.621 5.621 25 H 0.025 0.975 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.102 0.898 38 H 0.286 0.714 39 H 0.104 0.896 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 15.825 1.469 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.258 5.258 3 C -0.110 4.110 4 C -0.015 4.015 5 O -0.305 6.305 6 C -0.009 4.009 7 C -0.070 4.070 8 H 0.079 0.921 9 C 0.021 3.979 10 N -0.367 5.367 11 C 0.178 3.822 12 C -0.356 4.356 13 C 0.131 3.869 14 C -0.472 4.472 15 H 0.108 0.892 16 C -0.132 4.132 17 N -0.426 5.426 18 Si 0.746 3.254 19 H -0.195 1.195 20 H -0.220 1.220 21 H -0.169 1.169 22 C -0.345 4.345 23 C -0.002 4.002 24 N -0.345 5.345 25 H 0.044 0.956 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.417 15.999 2.075 17.018 hybrid contribution -0.435 -0.555 -0.632 0.947 sum 4.983 15.443 1.443 16.291 Atomic orbital electron populations 1.22435 0.86434 1.03505 1.00103 1.62126 1.08687 1.12839 1.42181 1.22805 0.96518 0.90076 1.01587 1.22669 0.92211 0.96347 0.90311 1.87981 1.69946 1.24162 1.48393 1.22744 0.91343 0.83435 1.03361 1.22627 0.96600 0.94932 0.92853 0.92118 1.21088 0.99687 0.90278 0.86856 1.44022 1.69940 1.08636 1.14119 1.18019 0.90279 0.84226 0.89693 1.21081 1.18200 0.96810 0.99538 1.17673 0.86269 0.91721 0.91265 1.19476 1.25507 0.90667 1.11574 0.89169 1.26192 0.96576 0.97011 0.93461 1.69664 1.32568 1.05852 1.34516 0.86221 0.82376 0.78119 0.78731 1.19482 1.22016 1.16929 1.21488 1.15778 1.00840 0.96414 1.21296 0.93119 0.88505 0.97280 1.66833 1.32082 1.15075 1.20480 0.95644 0.90055 0.91407 0.89629 0.94119 0.92122 0.88632 0.88139 0.91574 0.92461 0.91563 0.76524 0.87979 0.90301 0.87865 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.10 60.07 0.55 0.80 16 2 N -0.53 -6.10 4.12 -234.57 -0.97 -7.06 16 3 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 4 C 0.06 0.59 7.01 37.21 0.26 0.85 16 5 O -0.39 -4.68 10.83 -35.23 -0.38 -5.06 16 6 C 0.07 0.81 6.21 37.21 0.23 1.04 16 7 C 0.04 0.46 2.25 -67.60 -0.15 0.31 16 8 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.15 2.11 3.89 -4.04 -0.02 2.09 16 10 N -0.73 -12.68 5.23 -60.48 -0.32 -13.00 16 11 C 0.41 8.97 7.65 -154.99 -1.19 7.78 16 12 C -0.33 -7.80 9.11 -38.43 -0.35 -8.15 16 13 C 0.14 3.59 5.17 -106.55 -0.55 3.04 16 14 C -0.44 -11.98 9.63 -37.65 -0.36 -12.34 16 15 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.09 2.30 5.42 -17.35 -0.09 2.21 16 17 N -0.80 -21.14 13.92 55.55 0.77 -20.37 16 18 Si 0.92 20.93 24.51 -169.99 -4.17 16.77 16 19 H -0.27 -5.91 6.67 56.52 0.38 -5.54 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.25 -5.84 6.85 56.52 0.39 -5.45 16 22 C -0.32 -7.88 7.25 -39.07 -0.28 -8.16 16 23 C 0.15 3.44 11.10 -18.04 -0.20 3.24 16 24 N -0.62 -14.35 10.37 -12.82 -0.13 -14.48 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 1.05 6.55 -51.93 -0.34 0.71 16 27 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.86 7.29 -51.93 -0.38 0.48 16 34 H 0.06 0.84 6.74 -51.93 -0.35 0.49 16 35 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 36 H 0.40 6.77 7.55 -40.82 -0.31 6.46 16 37 H 0.10 2.28 6.71 -52.49 -0.35 1.93 16 38 H 0.29 6.81 8.29 -40.82 -0.34 6.47 16 39 H 0.10 2.50 4.59 -52.49 -0.24 2.26 16 40 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -28.98 315.68 -8.38 -37.36 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.77 Total: 8.21 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.18 Total: -7.14 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.64 Total: -54.90 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.38 Total: -5.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.98 -8.38 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158707562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.614 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds