Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47016 * 110.99598 * 2 1 4 4 C 1.53098 * 109.25797 * 177.60911 * 3 2 1 5 5 O 1.43025 * 109.26006 * 56.84334 * 4 3 2 6 6 C 1.43011 * 113.73585 * 301.33301 * 5 4 3 7 7 C 1.47019 * 110.99931 * 236.31812 * 2 1 3 8 8 H 1.08997 * 109.47231 * 62.43265 * 7 2 1 9 9 C 1.52998 * 109.54370 * 302.30262 * 7 2 1 10 10 N 1.46500 * 109.47508 * 306.26913 * 9 7 2 11 11 C 1.39075 * 120.00478 * 184.19378 * 10 9 7 12 12 C 1.38746 * 119.65262 * 359.73095 * 11 10 9 13 13 C 1.40781 * 118.66871 * 179.79801 * 12 11 10 14 14 C 1.41544 * 120.99846 * 180.21515 * 13 12 11 15 15 H 1.08010 * 119.99939 * 332.62069 * 14 13 12 16 16 C 1.40020 * 120.00532 * 152.61987 * 14 13 12 17 17 N 1.30743 * 120.00567 * 161.07216 * 16 14 13 18 18 Si 1.86802 * 119.99611 * 341.06957 * 16 14 13 19 19 H 1.48501 * 109.47279 * 95.04630 * 18 16 14 20 20 H 1.48507 * 109.47060 * 215.04236 * 18 16 14 21 21 H 1.48492 * 109.47364 * 335.04407 * 18 16 14 22 22 C 1.41196 * 118.00993 * 0.46135 * 13 12 11 23 23 C 1.36555 * 119.14696 * 359.75273 * 22 13 12 24 24 N 1.32099 * 121.26684 * 0.02562 * 23 22 13 25 25 H 1.08997 * 109.47188 * 66.03277 * 1 2 3 26 26 H 1.08998 * 109.46534 * 186.02663 * 1 2 3 27 27 H 1.08997 * 109.47337 * 306.02550 * 1 2 3 28 28 H 1.08998 * 109.51239 * 57.66821 * 3 2 1 29 29 H 1.09007 * 109.50389 * 297.53689 * 3 2 1 30 30 H 1.09002 * 109.50472 * 296.91244 * 4 3 2 31 31 H 1.08999 * 109.51309 * 176.78152 * 4 3 2 32 32 H 1.09000 * 109.50345 * 178.60332 * 6 5 4 33 33 H 1.09004 * 109.51243 * 298.68883 * 6 5 4 34 34 H 1.09002 * 109.47095 * 66.27414 * 9 7 2 35 35 H 1.08997 * 109.47322 * 186.26627 * 9 7 2 36 36 H 0.97006 * 119.99757 * 4.19515 * 10 9 7 37 37 H 1.07997 * 120.66922 * 0.02562 * 12 11 10 38 38 H 0.97003 * 120.00456 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.42517 * 179.73230 * 22 13 12 40 40 H 1.07995 * 119.36943 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 0.0603 5 8 4.0175 0.5575 -1.0403 6 6 3.5250 -0.7848 -1.0708 7 6 1.9959 -0.7612 -1.1421 8 1 1.6821 -0.2858 -2.0714 9 6 1.4600 -2.1934 -1.0937 10 7 1.7553 -2.7814 0.2153 11 6 1.4406 -4.1125 0.4668 12 6 0.8418 -4.8756 -0.5254 13 6 0.5361 -6.2219 -0.2499 14 6 -0.0708 -7.0463 -1.2274 15 1 -0.6944 -6.6075 -1.9923 16 6 0.1374 -8.4308 -1.2028 17 7 -0.6815 -9.2264 -1.8398 18 14 1.5852 -9.1409 -0.2600 19 1 1.1421 -9.5416 1.0995 20 1 2.1098 -10.3292 -0.9799 21 1 2.6548 -8.1167 -0.1502 22 6 0.8481 -6.7237 1.0325 23 6 1.4332 -5.8952 1.9467 24 7 1.7108 -4.6374 1.6532 25 1 -0.3633 0.4174 -0.9390 26 1 -0.3632 -1.0220 0.1079 27 1 -0.3634 0.6044 0.8311 28 1 1.6132 1.9093 0.8681 29 1 1.6827 1.8825 -0.9111 30 1 3.8385 0.8645 0.9964 31 1 3.9222 2.3400 0.0029 32 1 3.9223 -1.2984 -1.9464 33 1 3.8392 -1.3085 -0.1680 34 1 0.3816 -2.1834 -1.2526 35 1 1.9366 -2.7864 -1.8742 36 1 2.1704 -2.2422 0.9066 37 1 0.6182 -4.4464 -1.4908 38 1 -0.5375 -10.1856 -1.8225 39 1 0.6265 -7.7496 1.2871 40 1 1.6730 -6.2751 2.9287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158707562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = -22.292176 kcal Electronic energy + Delta-G solvation = -21648.227554 eV Core-core repulsion = 18461.935302 eV Total energy + Delta-G solvation = -3186.292252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04435 -40.29394 -37.47756 -36.24493 -35.54708 -33.24952 -32.64653 -30.19408 -29.49948 -27.86677 -27.11885 -25.16296 -24.03918 -22.96194 -22.81743 -20.84424 -19.56760 -18.04293 -17.54462 -17.44117 -17.16714 -16.73360 -16.17312 -16.10897 -15.81605 -15.58159 -15.14564 -15.05536 -14.81140 -14.66999 -14.42850 -13.97857 -13.45491 -13.29690 -13.12573 -12.87122 -12.79038 -12.70644 -12.41611 -12.37739 -12.02050 -11.64385 -11.54121 -11.23759 -10.84796 -10.53815 -10.08775 -9.88108 -9.43188 -8.96206 -8.31975 -6.67920 0.80009 0.99252 1.29769 1.44388 1.52328 2.13786 2.41832 2.69910 2.79359 2.87996 3.62092 3.69124 3.74975 3.94736 4.09448 4.16853 4.27112 4.28496 4.51313 4.57290 4.58865 4.63735 4.66403 4.69295 4.74057 4.79569 4.87280 4.88425 4.92913 4.99828 5.03943 5.28481 5.44418 5.76758 5.84791 5.94889 5.96048 6.12018 6.25444 6.38953 6.67188 6.79381 7.02107 7.77195 8.11174 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.004024 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.731024 B = 6956.669188 C = 7048.811333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.071 3.929 7 C 0.050 3.950 8 H 0.071 0.929 9 C 0.146 3.854 10 N -0.713 5.713 11 C 0.411 3.589 12 C -0.345 4.345 13 C 0.125 3.875 14 C -0.477 4.477 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.836 5.836 18 Si 0.973 3.027 19 H -0.253 1.253 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.338 4.338 23 C 0.154 3.846 24 N -0.625 5.625 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.106 0.894 38 H 0.297 0.703 39 H 0.107 0.893 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 17.272 2.775 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.107 4.107 4 C -0.020 4.020 5 O -0.317 6.317 6 C -0.006 4.006 7 C -0.059 4.059 8 H 0.088 0.912 9 C 0.020 3.980 10 N -0.348 5.348 11 C 0.179 3.821 12 C -0.371 4.371 13 C 0.116 3.884 14 C -0.507 4.507 15 H 0.077 0.923 16 C -0.162 4.162 17 N -0.461 5.461 18 Si 0.796 3.204 19 H -0.178 1.178 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.363 4.363 23 C 0.001 3.999 24 N -0.349 5.349 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.241 0.759 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.695 17.487 3.365 19.025 hybrid contribution -0.834 -0.787 -1.009 1.527 sum 5.861 16.700 2.356 17.855 Atomic orbital electron populations 1.22375 0.86262 1.02309 1.01164 1.62128 1.08944 1.14225 1.41847 1.22860 0.96320 0.88901 1.02580 1.22881 0.92393 0.97219 0.89464 1.87972 1.70283 1.24069 1.49421 1.22685 0.91173 0.83703 1.03058 1.22472 0.96561 0.93227 0.93656 0.91164 1.21220 0.99686 0.91873 0.85188 1.44065 1.68518 1.06912 1.15338 1.18213 0.89144 0.85688 0.89021 1.21201 1.18925 0.96603 1.00417 1.17870 0.86330 0.92502 0.91657 1.19471 1.27168 0.91881 1.12200 0.92297 1.26836 0.98382 0.96768 0.94172 1.69673 1.33883 1.06704 1.35861 0.85401 0.78964 0.77452 0.78564 1.17764 1.20284 1.18521 1.21585 1.16961 1.01486 0.96281 1.21847 0.91586 0.88123 0.98373 1.67009 1.31981 1.15281 1.20592 0.94784 0.92430 0.90068 0.87868 0.93757 0.92411 0.86199 0.87577 0.92803 0.92754 0.91715 0.75896 0.87619 0.89178 0.87578 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.10 127.69 1.16 1.70 16 2 N -0.55 -11.33 4.12 -896.04 -3.69 -15.02 16 3 C 0.02 0.34 5.66 86.31 0.49 0.83 16 4 C 0.06 0.94 7.01 72.01 0.50 1.45 16 5 O -0.40 -8.81 10.83 -148.98 -1.61 -10.42 16 6 C 0.07 1.58 6.21 72.01 0.45 2.03 16 7 C 0.05 1.10 2.25 44.92 0.10 1.20 16 8 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 9 C 0.15 4.05 3.89 86.38 0.34 4.38 16 10 N -0.71 -23.94 5.23 -345.26 -1.81 -25.74 16 11 C 0.41 17.73 7.65 132.91 1.02 18.75 16 12 C -0.34 -16.47 9.11 23.01 0.21 -16.26 16 13 C 0.12 6.52 5.17 -21.12 -0.11 6.41 16 14 C -0.48 -26.84 9.63 23.52 0.23 -26.62 16 15 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 16 C 0.06 2.96 5.42 85.29 0.46 3.42 16 17 N -0.84 -44.96 13.92 21.84 0.30 -44.66 16 18 Si 0.97 42.81 24.51 68.60 1.68 44.49 16 19 H -0.25 -10.38 6.67 99.48 0.66 -9.72 16 20 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.26 -12.05 6.85 99.48 0.68 -11.37 16 22 C -0.34 -16.36 7.25 22.60 0.16 -16.20 16 23 C 0.15 6.72 11.10 84.26 0.94 7.65 16 24 N -0.63 -27.72 10.37 -194.48 -2.02 -29.73 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 1.43 6.55 -2.39 -0.02 1.42 16 27 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 28 H 0.10 1.32 8.12 -2.39 -0.02 1.30 16 29 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.32 7.29 -2.38 -0.02 1.30 16 34 H 0.05 1.58 6.74 -2.39 -0.02 1.56 16 35 H 0.06 1.85 7.72 -2.39 -0.02 1.83 16 36 H 0.40 13.04 7.55 -92.70 -0.70 12.34 16 37 H 0.11 4.84 6.71 -2.91 -0.02 4.82 16 38 H 0.30 14.25 8.29 -92.71 -0.77 13.48 16 39 H 0.11 5.00 4.59 -2.91 -0.01 4.99 16 40 H 0.16 5.69 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -62.23 315.68 -0.92 -63.15 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.28 Total: 29.19 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.94 Total: -11.25 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -7.21 Total: -115.16 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.61 Total: -10.42 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.68 Total: 44.49 kcal Total: -62.23 -0.92 -63.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158707562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.857 kcal (2) G-P(sol) polarization free energy of solvation -62.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds