Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47013 * 110.99986 * 2 1 4 4 C 1.53092 * 109.26052 * 182.39372 * 3 2 1 5 5 O 1.43016 * 109.26152 * 303.15530 * 4 3 2 6 6 C 1.43022 * 113.77853 * 58.63859 * 5 4 3 7 7 C 1.47013 * 111.00508 * 123.63546 * 2 1 3 8 8 H 1.09002 * 109.50721 * 297.59153 * 7 2 1 9 9 C 1.53007 * 109.50172 * 57.67155 * 7 2 1 10 10 N 1.46499 * 109.47109 * 55.28186 * 9 7 2 11 11 C 1.39085 * 119.99882 * 176.05338 * 10 9 7 12 12 C 1.38740 * 119.65562 * 0.26973 * 11 10 9 13 13 C 1.40782 * 118.66350 * 180.02562 * 12 11 10 14 14 C 1.41554 * 120.98689 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00551 * 330.22162 * 14 13 12 16 16 C 1.40034 * 119.99796 * 150.23388 * 14 13 12 17 17 N 1.30746 * 119.99732 * 344.61712 * 16 14 13 18 18 Si 1.86801 * 119.99946 * 164.61944 * 16 14 13 19 19 H 1.48500 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46991 * 119.99742 * 18 16 14 21 21 H 1.48502 * 109.46681 * 239.99555 * 18 16 14 22 22 C 1.41182 * 118.01906 * 0.02562 * 13 12 11 23 23 C 1.36564 * 119.14382 * 359.97438 * 22 13 12 24 24 N 1.32093 * 121.26677 * 359.72881 * 23 22 13 25 25 H 1.09005 * 109.47072 * 290.11742 * 1 2 3 26 26 H 1.08999 * 109.47295 * 50.11672 * 1 2 3 27 27 H 1.09003 * 109.46831 * 170.12044 * 1 2 3 28 28 H 1.08995 * 109.51099 * 302.33127 * 3 2 1 29 29 H 1.09007 * 109.50584 * 62.46194 * 3 2 1 30 30 H 1.09007 * 109.50810 * 63.08353 * 4 3 2 31 31 H 1.08996 * 109.51027 * 183.21920 * 4 3 2 32 32 H 1.08998 * 109.55183 * 181.44659 * 6 5 4 33 33 H 1.08999 * 109.46443 * 61.31350 * 6 5 4 34 34 H 1.09001 * 109.47194 * 295.27649 * 9 7 2 35 35 H 1.09004 * 109.47049 * 175.27717 * 9 7 2 36 36 H 0.97000 * 120.00082 * 356.32658 * 10 9 7 37 37 H 1.07999 * 120.67103 * 0.02562 * 12 11 10 38 38 H 0.96999 * 119.99728 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.42841 * 180.02562 * 22 13 12 40 40 H 1.07992 * 119.36252 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0175 0.5574 1.0402 6 6 3.5250 -0.7850 1.0720 7 6 1.9960 -0.7602 1.1427 8 1 1.6822 -0.2848 2.0720 9 6 1.4590 -2.1922 1.0948 10 7 1.7863 -2.7934 -0.2004 11 6 1.4711 -4.1252 -0.4484 12 6 0.8417 -4.8760 0.5338 13 6 0.5327 -6.2221 0.2607 14 6 -0.1086 -7.0333 1.2274 15 1 0.0477 -6.8456 2.2794 16 6 -0.9455 -8.0794 0.8196 17 7 -1.3765 -8.1288 -0.4138 18 14 -1.4460 -9.4041 2.0378 19 1 -0.8286 -9.1211 3.3584 20 1 -2.9247 -9.4173 2.1748 21 1 -0.9823 -10.7272 1.5484 22 6 0.8826 -6.7391 -1.0056 23 6 1.5007 -5.9230 -1.9095 24 7 1.7708 -4.6623 -1.6224 25 1 -0.3633 0.3535 0.9650 26 1 -0.3634 0.6590 -0.7886 27 1 -0.3633 -1.0125 -0.1763 28 1 1.6133 1.9092 -0.8681 29 1 1.6828 1.8825 0.9111 30 1 3.8385 0.8644 -0.9965 31 1 3.9221 2.3398 -0.0029 32 1 3.9216 -1.2984 1.9479 33 1 3.8392 -1.3086 0.1691 34 1 0.3770 -2.1791 1.2264 35 1 1.9150 -2.7781 1.8929 36 1 2.2264 -2.2638 -0.8836 37 1 0.5937 -4.4368 1.4888 38 1 -1.9565 -8.8532 -0.6962 39 1 0.6635 -7.7665 -1.2566 40 1 1.7702 -6.3149 -2.8790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158707563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = -3.755134 kcal Electronic energy + Delta-G solvation = -21561.144549 eV Core-core repulsion = 18375.656123 eV Total energy + Delta-G solvation = -3185.488425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96552 -38.33524 -36.27717 -34.77086 -33.76190 -31.47092 -30.55560 -29.03273 -27.85812 -25.89843 -25.71508 -24.22668 -22.82314 -21.22429 -20.95722 -19.64730 -17.63549 -16.55830 -16.46470 -15.96983 -15.54545 -15.14768 -15.01534 -14.69442 -14.34021 -13.97775 -13.80326 -13.58781 -13.22353 -12.88318 -12.52913 -12.39729 -12.33619 -11.96945 -11.83843 -11.43120 -11.34160 -11.18863 -11.04212 -10.82570 -10.62215 -10.22731 -9.81876 -9.74242 -9.35022 -8.87289 -8.49638 -7.88383 -7.85209 -6.78709 -6.39758 -4.51559 2.82459 3.06504 3.08836 3.12293 3.37597 3.59843 3.74728 3.92428 4.18688 4.68470 4.74741 4.78614 4.82028 5.01874 5.13464 5.19187 5.41414 5.45152 5.47285 5.63208 5.69499 5.76328 5.83594 5.89233 5.98186 6.03311 6.16948 6.76416 6.83732 6.85310 6.92806 6.97812 7.02792 7.07959 7.26963 7.58044 7.89461 8.08638 8.17276 8.51417 8.78113 8.88210 8.94219 9.81532 10.19309 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.003818 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.752621 B = 7332.284863 C = 7572.789815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.018 3.982 4 C 0.062 3.938 5 O -0.387 6.387 6 C 0.069 3.931 7 C 0.039 3.961 8 H 0.060 0.940 9 C 0.150 3.850 10 N -0.733 5.733 11 C 0.398 3.602 12 C -0.333 4.333 13 C 0.161 3.839 14 C -0.465 4.465 15 H 0.079 0.921 16 C 0.080 3.920 17 N -0.790 5.790 18 Si 0.908 3.092 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.272 1.272 22 C -0.241 4.241 23 C 0.117 3.883 24 N -0.620 5.620 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.096 0.904 38 H 0.280 0.720 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 13.597 2.379 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.110 4.110 4 C -0.015 4.015 5 O -0.306 6.306 6 C -0.008 4.008 7 C -0.070 4.070 8 H 0.077 0.923 9 C 0.023 3.977 10 N -0.371 5.371 11 C 0.167 3.833 12 C -0.360 4.360 13 C 0.153 3.847 14 C -0.496 4.496 15 H 0.097 0.903 16 C -0.139 4.139 17 N -0.416 5.416 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.265 4.265 23 C -0.033 4.033 24 N -0.343 5.343 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.421 13.828 1.468 14.591 hybrid contribution -1.293 -0.699 1.391 2.024 sum 3.128 13.129 2.859 13.796 Atomic orbital electron populations 1.22431 0.86430 1.03613 0.99931 1.62136 1.08683 1.12736 1.42179 1.22808 0.96523 0.90168 1.01521 1.22663 0.92226 0.96299 0.90318 1.87968 1.69953 1.24227 1.48425 1.22739 0.91383 0.83373 1.03339 1.22633 0.96562 0.95079 0.92709 0.92257 1.21035 0.99392 0.89940 0.87293 1.43968 1.68749 1.08918 1.15435 1.17976 0.91074 0.84226 0.90020 1.21191 1.18623 0.95634 1.00540 1.17591 0.85615 0.89733 0.91765 1.19557 1.24309 1.11379 0.94376 0.90327 1.25903 0.94498 0.97749 0.95706 1.69805 1.24640 1.29398 1.17741 0.86276 0.78661 0.80441 0.81407 1.18406 1.20004 1.19670 1.21646 1.07176 1.00914 0.96806 1.21348 0.95713 0.88705 0.97531 1.66760 1.32010 1.15010 1.20523 0.95640 0.91504 0.90018 0.89663 0.94190 0.92114 0.88672 0.88188 0.91528 0.92625 0.91921 0.76797 0.88603 0.90900 0.86720 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.01 60.06 0.54 0.82 16 2 N -0.53 -6.45 4.20 -234.57 -0.99 -7.44 16 3 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 4 C 0.06 0.62 7.01 37.21 0.26 0.88 16 5 O -0.39 -4.84 10.82 -35.23 -0.38 -5.22 16 6 C 0.07 0.85 6.20 37.21 0.23 1.08 16 7 C 0.04 0.49 2.23 -67.60 -0.15 0.34 16 8 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 9 C 0.15 2.26 3.94 -4.04 -0.02 2.25 16 10 N -0.73 -13.47 5.23 -60.47 -0.32 -13.79 16 11 C 0.40 9.26 7.65 -154.97 -1.19 8.08 16 12 C -0.33 -8.26 9.11 -38.43 -0.35 -8.61 16 13 C 0.16 4.35 5.53 -106.55 -0.59 3.76 16 14 C -0.46 -12.34 9.10 -37.65 -0.34 -12.69 16 15 H 0.08 2.01 7.89 -52.49 -0.41 1.60 16 16 C 0.08 2.01 5.18 -17.34 -0.09 1.92 16 17 N -0.79 -20.48 11.24 55.55 0.62 -19.85 16 18 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.24 -6.35 8.70 -39.07 -0.34 -6.69 16 23 C 0.12 2.88 11.10 -18.04 -0.20 2.68 16 24 N -0.62 -15.22 10.37 -12.82 -0.13 -15.35 16 25 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 26 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 27 H 0.08 1.14 6.74 -51.93 -0.35 0.79 16 28 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.90 7.17 -51.93 -0.37 0.53 16 34 H 0.06 0.88 6.73 -51.93 -0.35 0.53 16 35 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 36 H 0.40 7.15 7.49 -40.82 -0.31 6.84 16 37 H 0.10 2.23 6.71 -52.49 -0.35 1.88 16 38 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 39 H 0.11 3.08 6.59 -52.48 -0.35 2.73 16 40 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -29.16 321.56 -9.45 -38.61 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.82 Total: 10.71 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.25 Total: -6.02 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.81 Total: -56.43 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.16 -9.45 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158707563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.851 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds