Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47022 * 110.99792 * 2 1 4 4 C 1.53104 * 109.25135 * 177.60848 * 3 2 1 5 5 O 1.43004 * 109.26177 * 56.84857 * 4 3 2 6 6 C 1.43018 * 113.73768 * 301.32608 * 5 4 3 7 7 H 1.08995 * 109.50594 * 298.69013 * 6 5 4 8 8 C 1.53002 * 109.50557 * 178.60658 * 6 5 4 9 9 N 1.46498 * 109.47341 * 65.00051 * 8 6 5 10 10 C 1.38367 * 120.00101 * 179.97438 * 9 8 6 11 11 C 1.39712 * 119.42810 * 0.02562 * 10 9 8 12 12 C 1.36570 * 119.48946 * 180.02562 * 11 10 9 13 13 C 1.41322 * 118.40635 * 359.97438 * 12 11 10 14 14 C 1.41203 * 120.56607 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00034 * 204.13470 * 14 13 12 16 16 C 1.39874 * 120.00135 * 24.40934 * 14 13 12 17 17 N 1.30903 * 120.00018 * 16.52987 * 16 14 13 18 18 Si 1.86799 * 119.99948 * 196.53033 * 16 14 13 19 19 H 1.48506 * 109.46798 * 89.99790 * 18 16 14 20 20 H 1.48496 * 109.47175 * 209.99670 * 18 16 14 21 21 H 1.48496 * 109.47292 * 329.99915 * 18 16 14 22 22 C 1.40746 * 118.86355 * 0.25774 * 13 12 11 23 23 N 1.31488 * 120.36742 * 359.44811 * 22 13 12 24 24 C 1.47008 * 111.00068 * 236.36489 * 2 1 3 25 25 H 1.09000 * 109.47183 * 63.95117 * 1 2 3 26 26 H 1.08991 * 109.47576 * 183.95608 * 1 2 3 27 27 H 1.09005 * 109.47158 * 303.96115 * 1 2 3 28 28 H 1.08993 * 109.50703 * 57.67375 * 3 2 1 29 29 H 1.09000 * 109.50331 * 297.53984 * 3 2 1 30 30 H 1.08999 * 109.50619 * 296.90897 * 4 3 2 31 31 H 1.09004 * 109.53426 * 176.80317 * 4 3 2 32 32 H 1.09004 * 109.46983 * 305.00072 * 8 6 5 33 33 H 1.09002 * 109.47052 * 185.00680 * 8 6 5 34 34 H 0.97003 * 119.99875 * 0.02562 * 9 8 6 35 35 H 1.07995 * 120.25582 * 0.02562 * 11 10 9 36 36 H 1.07993 * 120.79421 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99787 * 180.02562 * 17 16 14 38 38 H 1.07997 * 119.81828 * 179.74589 * 22 13 12 39 39 H 1.08997 * 109.50867 * 62.45872 * 24 2 1 40 40 H 1.09002 * 109.50462 * 302.32958 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0402 6 6 3.5249 -0.7849 -1.0708 7 1 3.8392 -1.3086 -0.1680 8 6 4.0826 -1.5058 -2.2998 9 7 5.5369 -1.6299 -2.1751 10 6 6.2663 -2.2519 -3.1729 11 6 5.6036 -2.7569 -4.2944 12 6 6.3222 -3.3715 -5.2798 13 6 7.7233 -3.4739 -5.1260 14 6 8.5105 -4.1008 -6.1165 15 1 9.4693 -4.5243 -5.8562 16 6 8.0512 -4.1683 -7.4359 17 7 7.0739 -3.3913 -7.8293 18 14 8.8323 -5.3672 -8.6367 19 1 8.1105 -6.6639 -8.5814 20 1 8.7510 -4.8138 -10.0122 21 1 10.2561 -5.5772 -8.2709 22 6 8.3198 -2.9455 -3.9659 23 7 7.5836 -2.3578 -3.0485 24 6 1.9959 -0.7602 -1.1427 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3634 -1.0251 0.0709 27 1 -0.3634 0.5741 0.8524 28 1 1.6134 1.9092 0.8681 29 1 1.6827 1.8826 -0.9110 30 1 3.8385 0.8644 0.9964 31 1 3.9228 2.3396 0.0033 32 1 3.8421 -0.9344 -3.1964 33 1 3.6380 -2.4985 -2.3715 34 1 5.9885 -1.2766 -1.3927 35 1 4.5314 -2.6619 -4.3815 36 1 5.8316 -3.7691 -6.1559 37 1 6.7551 -3.4384 -8.7442 38 1 9.3888 -3.0189 -3.8306 39 1 1.6828 -0.2843 -2.0719 40 1 1.6133 -1.7803 -1.1086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162680101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = -3.585981 kcal Electronic energy + Delta-G solvation = -20977.832477 eV Core-core repulsion = 17792.351386 eV Total energy + Delta-G solvation = -3185.481090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86529 -38.42344 -36.04798 -35.10835 -33.63058 -31.61105 -30.52160 -29.29393 -28.75282 -26.33312 -24.47884 -24.17645 -22.61806 -21.54077 -20.53189 -20.46026 -17.21314 -16.72877 -16.63093 -16.08152 -15.79165 -15.24123 -15.09080 -14.95049 -14.56294 -13.93629 -13.66601 -13.47037 -13.18576 -12.94847 -12.62223 -12.33093 -12.21831 -12.08478 -11.77313 -11.51319 -11.48202 -11.21802 -11.14147 -11.02754 -10.60582 -10.52490 -9.78031 -9.69792 -9.37476 -8.72068 -8.66903 -8.17963 -7.95617 -6.77746 -6.54855 -4.13770 2.80459 3.03540 3.12105 3.15609 3.33928 3.46070 3.65353 3.99655 4.14563 4.68351 4.73412 4.75685 4.82078 4.93315 5.01778 5.16396 5.19425 5.26057 5.40491 5.50332 5.52941 5.57930 5.65845 5.79133 5.91035 6.05492 6.17803 6.54247 6.60075 6.61665 6.68886 6.92237 7.10556 7.22960 7.38401 7.48020 7.81605 7.97151 8.32830 8.49920 8.72698 8.90010 8.98259 9.78385 10.28968 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039855 B = 0.003127 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.378882 B = 8952.031530 C = 9364.016903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.063 3.937 5 O -0.371 6.371 6 C 0.086 3.914 7 H 0.072 0.928 8 C 0.154 3.846 9 N -0.739 5.739 10 C 0.282 3.718 11 C -0.205 4.205 12 C -0.092 4.092 13 C 0.028 3.972 14 C -0.457 4.457 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.808 5.808 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.263 1.263 22 C 0.013 3.987 23 N -0.523 5.523 24 C 0.025 3.975 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.392 0.608 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.278 0.722 38 H 0.127 0.873 39 H 0.047 0.953 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 5.945 11.207 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.290 6.290 6 C 0.027 3.973 7 H 0.090 0.910 8 C 0.028 3.972 9 N -0.379 5.379 10 C 0.050 3.950 11 C -0.229 4.229 12 C -0.119 4.119 13 C 0.023 3.977 14 C -0.489 4.489 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.435 5.435 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.145 4.145 23 N -0.238 5.238 24 C -0.103 4.103 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.226 0.774 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.066 0.934 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.256 6.158 11.905 18.162 hybrid contribution -0.565 -0.295 -1.720 1.834 sum -12.821 5.864 10.185 17.392 Atomic orbital electron populations 1.22381 0.86812 1.02531 1.00615 1.62195 1.08250 1.13664 1.42624 1.22836 0.96986 0.89780 1.01624 1.22639 0.91770 0.96664 0.90401 1.88121 1.69667 1.23296 1.47886 1.22392 0.91635 0.83854 0.99396 0.90976 1.20964 0.82443 0.98137 0.95693 1.43427 1.03760 1.67493 1.23171 1.17746 0.88325 0.99458 0.89509 1.20804 0.98595 1.07307 0.96240 1.21305 0.93958 0.99050 0.97596 1.18355 0.92532 0.93305 0.93535 1.19326 1.04501 1.32867 0.92187 0.90451 1.25846 0.94554 0.94637 0.99244 1.69822 1.23922 1.31219 1.18521 0.86309 0.80479 0.80896 0.78962 1.19491 1.20518 1.18707 1.22199 0.97217 1.01910 0.93168 1.66527 1.04882 1.19908 1.32525 1.22734 0.95700 0.99694 0.92202 0.95432 0.91040 0.91251 0.89752 0.93864 0.92325 0.88410 0.92485 0.91716 0.77444 0.88602 0.85488 0.91119 0.85578 0.93431 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.61 60.06 0.58 0.77 16 2 N -0.54 -5.37 4.99 -242.59 -1.21 -6.58 16 3 C 0.02 0.15 5.66 -3.70 -0.02 0.13 16 4 C 0.06 0.64 7.01 37.21 0.26 0.90 16 5 O -0.37 -5.16 10.42 -35.23 -0.37 -5.53 16 6 C 0.09 1.09 2.84 -26.68 -0.08 1.02 16 7 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 8 C 0.15 2.37 4.54 -4.04 -0.02 2.35 16 9 N -0.74 -14.19 5.65 -60.35 -0.34 -14.53 16 10 C 0.28 6.65 7.64 -155.13 -1.19 5.47 16 11 C -0.21 -4.90 9.24 -39.63 -0.37 -5.26 16 12 C -0.09 -2.42 8.74 -39.01 -0.34 -2.76 16 13 C 0.03 0.75 5.59 -106.65 -0.60 0.16 16 14 C -0.46 -12.22 9.07 -37.84 -0.34 -12.57 16 15 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 16 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 17 N -0.81 -21.12 10.90 55.54 0.61 -20.52 16 18 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C 0.01 0.34 10.97 -16.75 -0.18 0.16 16 23 N -0.52 -13.25 10.37 -11.79 -0.12 -13.38 16 24 C 0.03 0.27 4.95 -3.71 -0.02 0.25 16 25 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 33 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 34 H 0.39 7.30 8.59 -40.82 -0.35 6.95 16 35 H 0.10 2.01 6.64 -52.49 -0.35 1.67 16 36 H 0.13 3.39 6.20 -52.49 -0.33 3.07 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.13 3.04 8.06 -52.49 -0.42 2.61 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -29.94 327.18 -9.98 -39.92 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.04 Total: 9.43 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.40 Total: -7.64 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -1.07 Total: -55.00 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.37 Total: -5.53 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.94 -9.98 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162680101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.331 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds