Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47022 * 110.99792 * 2 1 4 4 C 1.53104 * 109.25135 * 177.60848 * 3 2 1 5 5 O 1.43004 * 109.26177 * 56.84857 * 4 3 2 6 6 C 1.43018 * 113.73768 * 301.32608 * 5 4 3 7 7 H 1.08995 * 109.50594 * 298.69013 * 6 5 4 8 8 C 1.53002 * 109.50557 * 178.60658 * 6 5 4 9 9 N 1.46498 * 109.47341 * 65.00051 * 8 6 5 10 10 C 1.38367 * 120.00101 * 179.97438 * 9 8 6 11 11 C 1.39712 * 119.42810 * 0.02562 * 10 9 8 12 12 C 1.36570 * 119.48946 * 180.02562 * 11 10 9 13 13 C 1.41322 * 118.40635 * 359.97438 * 12 11 10 14 14 C 1.41203 * 120.56607 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00034 * 204.13470 * 14 13 12 16 16 C 1.39874 * 120.00135 * 24.40934 * 14 13 12 17 17 N 1.30903 * 120.00018 * 16.52987 * 16 14 13 18 18 Si 1.86799 * 119.99948 * 196.53033 * 16 14 13 19 19 H 1.48506 * 109.46798 * 89.99790 * 18 16 14 20 20 H 1.48496 * 109.47175 * 209.99670 * 18 16 14 21 21 H 1.48496 * 109.47292 * 329.99915 * 18 16 14 22 22 C 1.40746 * 118.86355 * 0.25774 * 13 12 11 23 23 N 1.31488 * 120.36742 * 359.44811 * 22 13 12 24 24 C 1.47008 * 111.00068 * 236.36489 * 2 1 3 25 25 H 1.09000 * 109.47183 * 63.95117 * 1 2 3 26 26 H 1.08991 * 109.47576 * 183.95608 * 1 2 3 27 27 H 1.09005 * 109.47158 * 303.96115 * 1 2 3 28 28 H 1.08993 * 109.50703 * 57.67375 * 3 2 1 29 29 H 1.09000 * 109.50331 * 297.53984 * 3 2 1 30 30 H 1.08999 * 109.50619 * 296.90897 * 4 3 2 31 31 H 1.09004 * 109.53426 * 176.80317 * 4 3 2 32 32 H 1.09004 * 109.46983 * 305.00072 * 8 6 5 33 33 H 1.09002 * 109.47052 * 185.00680 * 8 6 5 34 34 H 0.97003 * 119.99875 * 0.02562 * 9 8 6 35 35 H 1.07995 * 120.25582 * 0.02562 * 11 10 9 36 36 H 1.07993 * 120.79421 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99787 * 180.02562 * 17 16 14 38 38 H 1.07997 * 119.81828 * 179.74589 * 22 13 12 39 39 H 1.08997 * 109.50867 * 62.45872 * 24 2 1 40 40 H 1.09002 * 109.50462 * 302.32958 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0402 6 6 3.5249 -0.7849 -1.0708 7 1 3.8392 -1.3086 -0.1680 8 6 4.0826 -1.5058 -2.2998 9 7 5.5369 -1.6299 -2.1751 10 6 6.2663 -2.2519 -3.1729 11 6 5.6036 -2.7569 -4.2944 12 6 6.3222 -3.3715 -5.2798 13 6 7.7233 -3.4739 -5.1260 14 6 8.5105 -4.1008 -6.1165 15 1 9.4693 -4.5243 -5.8562 16 6 8.0512 -4.1683 -7.4359 17 7 7.0739 -3.3913 -7.8293 18 14 8.8323 -5.3672 -8.6367 19 1 8.1105 -6.6639 -8.5814 20 1 8.7510 -4.8138 -10.0122 21 1 10.2561 -5.5772 -8.2709 22 6 8.3198 -2.9455 -3.9659 23 7 7.5836 -2.3578 -3.0485 24 6 1.9959 -0.7602 -1.1427 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3634 -1.0251 0.0709 27 1 -0.3634 0.5741 0.8524 28 1 1.6134 1.9092 0.8681 29 1 1.6827 1.8826 -0.9110 30 1 3.8385 0.8644 0.9964 31 1 3.9228 2.3396 0.0033 32 1 3.8421 -0.9344 -3.1964 33 1 3.6380 -2.4985 -2.3715 34 1 5.9885 -1.2766 -1.3927 35 1 4.5314 -2.6619 -4.3815 36 1 5.8316 -3.7691 -6.1559 37 1 6.7551 -3.4384 -8.7442 38 1 9.3888 -3.0189 -3.8306 39 1 1.6828 -0.2843 -2.0719 40 1 1.6133 -1.7803 -1.1086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162680101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = -24.150110 kcal Electronic energy + Delta-G solvation = -20978.724204 eV Core-core repulsion = 17792.351386 eV Total energy + Delta-G solvation = -3186.372818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83626 -40.23670 -37.14841 -36.46323 -35.39595 -32.86493 -32.44792 -30.77744 -29.83579 -27.66462 -26.01243 -25.05949 -24.12909 -23.13537 -22.21237 -21.41762 -19.17696 -18.23265 -17.63075 -17.28701 -17.08859 -16.74995 -16.16982 -15.87511 -15.81608 -15.44636 -15.03105 -14.80063 -14.70079 -14.45278 -13.82107 -13.63960 -13.45861 -13.29840 -13.22904 -12.96842 -12.87977 -12.77163 -12.36766 -12.22087 -12.10195 -11.62440 -11.54817 -11.21710 -10.66922 -10.46441 -10.15483 -9.92354 -9.45387 -8.66106 -8.40110 -6.12266 0.89768 1.13171 1.42513 1.55402 1.58256 2.25892 2.47657 2.73067 2.83354 2.92498 3.80077 3.82094 3.88421 3.96538 4.04261 4.19563 4.22881 4.34918 4.49139 4.58170 4.62325 4.63644 4.65705 4.66639 4.77679 4.81611 4.89121 4.96857 4.99330 5.02892 5.29458 5.42099 5.57699 5.85495 5.88438 5.93940 5.99322 6.19270 6.49589 6.62744 6.84010 6.93718 7.13726 7.85221 8.41191 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039855 B = 0.003127 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.378882 B = 8952.031530 C = 9364.016903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.552 5.552 3 C 0.018 3.982 4 C 0.057 3.943 5 O -0.400 6.400 6 C 0.094 3.906 7 H 0.073 0.927 8 C 0.151 3.849 9 N -0.731 5.731 10 C 0.286 3.714 11 C -0.208 4.208 12 C -0.106 4.106 13 C -0.002 4.002 14 C -0.491 4.491 15 H 0.078 0.922 16 C 0.032 3.968 17 N -0.838 5.838 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.259 1.259 22 C -0.001 4.001 23 N -0.539 5.539 24 C 0.030 3.970 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.395 0.605 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.286 0.714 38 H 0.135 0.865 39 H 0.041 0.959 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 5.971 11.749 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.110 4.110 4 C -0.019 4.019 5 O -0.319 6.319 6 C 0.036 3.964 7 H 0.091 0.909 8 C 0.025 3.975 9 N -0.370 5.370 10 C 0.051 3.949 11 C -0.232 4.232 12 C -0.133 4.133 13 C -0.007 4.007 14 C -0.522 4.522 15 H 0.096 0.904 16 C -0.181 4.181 17 N -0.466 5.466 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.183 1.183 22 C -0.158 4.158 23 N -0.255 5.255 24 C -0.098 4.098 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.229 0.771 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.152 0.848 39 H 0.060 0.940 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.572 6.209 12.486 19.458 hybrid contribution -0.258 -0.187 -1.763 1.792 sum -13.829 6.022 10.722 18.506 Atomic orbital electron populations 1.22446 0.85341 1.03312 1.01232 1.62224 1.09594 1.13896 1.41953 1.22847 0.96095 0.89692 1.02320 1.22851 0.92751 0.96889 0.89458 1.88071 1.70563 1.23822 1.49470 1.22249 0.92906 0.83442 0.97826 0.90868 1.21177 0.80134 0.99269 0.96877 1.43574 1.05214 1.66146 1.22017 1.18099 0.88151 0.98466 0.90172 1.21027 0.99939 1.06535 0.95668 1.21336 0.94016 0.99967 0.98021 1.18655 0.93275 0.94401 0.94383 1.19569 1.05049 1.34306 0.93263 0.90429 1.26701 0.94970 0.95837 1.00563 1.69872 1.25025 1.32240 1.19447 0.85167 0.79506 0.78299 0.76482 1.18765 1.19588 1.18299 1.22376 0.97888 1.02265 0.93321 1.66601 1.05761 1.20537 1.32606 1.22650 0.94061 1.00683 0.92454 0.95440 0.90367 0.89859 0.87557 0.94487 0.91981 0.87070 0.93329 0.90242 0.77063 0.85879 0.86464 0.90345 0.84754 0.94027 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.61 127.69 1.23 1.54 16 2 N -0.55 -9.63 4.99 -921.43 -4.59 -14.22 16 3 C 0.02 0.30 5.66 86.31 0.49 0.79 16 4 C 0.06 1.08 7.01 72.02 0.50 1.58 16 5 O -0.40 -10.64 10.42 -148.98 -1.55 -12.20 16 6 C 0.09 2.26 2.84 30.63 0.09 2.35 16 7 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 8 C 0.15 4.42 4.54 86.38 0.39 4.81 16 9 N -0.73 -27.40 5.65 -344.86 -1.95 -29.35 16 10 C 0.29 13.40 7.64 133.32 1.02 14.42 16 11 C -0.21 -9.87 9.24 22.24 0.21 -9.66 16 12 C -0.11 -5.69 8.74 22.64 0.20 -5.49 16 13 C 0.00 -0.11 5.59 -21.18 -0.12 -0.23 16 14 C -0.49 -26.80 9.07 23.39 0.21 -26.59 16 15 H 0.08 4.07 7.90 -2.91 -0.02 4.04 16 16 C 0.03 1.64 5.19 85.23 0.44 2.08 16 17 N -0.84 -44.28 10.90 21.82 0.24 -44.05 16 18 Si 0.98 38.70 29.59 68.60 2.03 40.73 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 C 0.00 -0.08 10.97 85.36 0.94 0.86 16 23 N -0.54 -27.50 10.37 -191.21 -1.98 -29.48 16 24 C 0.03 0.59 4.95 86.31 0.43 1.02 16 25 H 0.03 0.35 8.14 -2.39 -0.02 0.34 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.05 1.53 7.90 -2.38 -0.02 1.51 16 33 H 0.08 2.13 7.90 -2.39 -0.02 2.11 16 34 H 0.40 14.39 8.59 -92.71 -0.80 13.60 16 35 H 0.12 5.04 6.64 -2.91 -0.02 5.02 16 36 H 0.12 6.41 6.20 -2.91 -0.02 6.39 16 37 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 38 H 0.14 6.66 8.06 -2.91 -0.02 6.64 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.36 327.18 -1.55 -65.91 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.24 Total: 35.19 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 6.02 Total: -12.53 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -8.29 Total: -117.10 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.55 Total: -12.20 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -64.36 -1.55 -65.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162680101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.760 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds