Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47016 * 111.00496 * 2 1 4 4 C 1.53091 * 109.25781 * 177.60735 * 3 2 1 5 5 O 1.43018 * 109.25972 * 56.85172 * 4 3 2 6 6 C 1.43015 * 113.73442 * 301.32692 * 5 4 3 7 7 H 1.08994 * 109.54629 * 298.71094 * 6 5 4 8 8 C 1.53006 * 109.50148 * 178.60399 * 6 5 4 9 9 N 1.46501 * 109.47212 * 65.22162 * 8 6 5 10 10 C 1.32203 * 120.00317 * 114.74047 * 9 8 6 11 11 C 1.46914 * 120.83280 * 353.38448 * 10 9 8 12 12 C 1.34378 * 119.36772 * 179.72505 * 11 10 9 13 13 N 1.36426 * 121.22132 * 0.02562 * 12 11 10 14 14 H 0.97008 * 119.08861 * 180.02562 * 13 12 11 15 15 C 1.37765 * 121.82207 * 0.02562 * 13 12 11 16 16 C 1.40186 * 119.74489 * 179.97438 * 15 13 12 17 17 H 1.07993 * 119.99534 * 154.90704 * 16 15 13 18 18 C 1.40347 * 119.99849 * 334.90496 * 16 15 13 19 19 N 1.30595 * 120.00132 * 345.12342 * 18 16 15 20 20 Si 1.86803 * 119.99901 * 165.12261 * 18 16 15 21 21 H 1.48500 * 109.46747 * 90.00106 * 20 18 16 22 22 H 1.48498 * 109.47305 * 210.00114 * 20 18 16 23 23 H 1.48496 * 109.47135 * 330.00333 * 20 18 16 24 24 C 1.39067 * 120.50945 * 359.96553 * 15 13 12 25 25 C 1.47015 * 110.99666 * 236.36494 * 2 1 3 26 26 H 1.08995 * 109.47656 * 183.63221 * 1 2 3 27 27 H 1.09006 * 109.47089 * 303.63621 * 1 2 3 28 28 H 1.09004 * 109.47170 * 63.63367 * 1 2 3 29 29 H 1.08993 * 109.50448 * 297.54375 * 3 2 1 30 30 H 1.09006 * 109.50117 * 57.67412 * 3 2 1 31 31 H 1.09000 * 109.50814 * 176.78319 * 4 3 2 32 32 H 1.08995 * 109.50888 * 296.87036 * 4 3 2 33 33 H 1.08994 * 109.47287 * 305.22070 * 8 6 5 34 34 H 1.09005 * 109.46867 * 185.21492 * 8 6 5 35 35 H 1.08001 * 120.31921 * 359.70655 * 11 10 9 36 36 H 1.07999 * 119.39051 * 179.97438 * 12 11 10 37 37 H 0.96997 * 119.99578 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.62556 * 180.02562 * 24 15 13 39 39 H 1.09002 * 109.51131 * 62.46512 * 25 2 1 40 40 H 1.08994 * 109.50980 * 302.32378 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3262 0.0603 5 8 4.0175 0.5572 -1.0403 6 6 3.5248 -0.7850 -1.0709 7 1 3.8384 -1.3092 -0.1682 8 6 4.0824 -1.5059 -2.3000 9 7 5.5362 -1.6346 -2.1729 10 6 6.0863 -2.8313 -2.0582 11 6 5.2530 -4.0322 -1.9110 12 6 5.8431 -5.2346 -1.8023 13 7 7.2014 -5.3604 -1.8256 14 1 7.5946 -6.2435 -1.7450 15 6 8.0299 -4.2680 -1.9603 16 6 9.4201 -4.4474 -1.9783 17 1 10.0518 -3.7218 -2.4689 18 6 9.9908 -5.5701 -1.3589 19 7 9.2837 -6.2871 -0.5274 20 14 11.7619 -6.0387 -1.7238 21 1 12.6627 -5.3579 -0.7593 22 1 11.9210 -7.5096 -1.5964 23 1 12.1098 -5.6210 -3.1057 24 6 7.4977 -2.9886 -2.0787 25 6 1.9957 -0.7602 -1.1427 26 1 -0.3634 -1.0255 0.0651 27 1 -0.3633 0.5693 0.8557 28 1 -0.3634 0.4564 -0.9208 29 1 1.6829 1.8825 -0.9109 30 1 1.6134 1.9091 0.8683 31 1 3.9223 2.3396 0.0030 32 1 3.8385 0.8649 0.9967 33 1 3.8454 -0.9325 -3.1961 34 1 3.6350 -2.4971 -2.3739 35 1 4.1763 -3.9495 -1.8901 36 1 5.2309 -6.1176 -1.6936 37 1 9.6783 -7.0627 -0.0990 38 1 8.1455 -2.1309 -2.1848 39 1 1.6827 -0.2843 -2.0721 40 1 1.6133 -1.7803 -1.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162689498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = -19.701472 kcal Electronic energy + Delta-G solvation = -21109.517558 eV Core-core repulsion = 17923.337648 eV Total energy + Delta-G solvation = -3186.179910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65257 -40.22740 -36.93660 -36.41116 -35.31439 -33.11275 -32.30097 -30.45183 -29.61454 -28.16329 -26.49361 -25.06923 -23.62323 -23.11036 -21.64032 -21.39429 -19.74324 -18.37064 -17.50756 -17.24085 -17.14621 -16.69134 -16.19882 -15.95614 -15.78099 -15.51678 -15.24406 -14.78314 -14.54876 -14.49142 -13.79503 -13.59289 -13.28466 -13.16748 -12.97199 -12.83557 -12.79755 -12.59996 -12.37548 -12.34289 -12.21348 -11.80891 -11.66399 -11.32821 -11.04441 -10.56661 -9.96502 -9.45390 -9.23250 -8.95157 -7.73444 -6.64048 0.96330 1.09415 1.42945 1.54680 1.62882 2.17456 2.55842 2.77785 2.87127 2.98372 3.49408 3.78443 3.93626 4.00882 4.10206 4.14006 4.22045 4.36509 4.51248 4.53274 4.55807 4.62003 4.63956 4.68717 4.84782 4.88056 4.93161 4.94999 4.98705 5.07233 5.17500 5.21719 5.66065 5.81646 5.85941 5.96784 6.00329 6.11099 6.34952 6.46161 6.53022 7.01485 7.20574 7.99642 8.06589 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036657 B = 0.003335 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.647145 B = 8394.059307 C = 8718.006844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.025 3.975 4 C 0.051 3.949 5 O -0.394 6.394 6 C 0.109 3.891 7 H 0.029 0.971 8 C 0.072 3.928 9 N -0.698 5.698 10 C 0.262 3.738 11 C -0.322 4.322 12 C 0.140 3.860 13 N -0.601 5.601 14 H 0.418 0.582 15 C 0.324 3.676 16 C -0.497 4.497 17 H 0.094 0.906 18 C 0.050 3.950 19 N -0.825 5.825 20 Si 0.995 3.005 21 H -0.266 1.266 22 H -0.256 1.256 23 H -0.259 1.259 24 C -0.401 4.401 25 C 0.036 3.964 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.138 0.862 36 H 0.187 0.813 37 H 0.306 0.694 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 0.268 1.890 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.103 4.103 4 C -0.026 4.026 5 O -0.313 6.313 6 C 0.050 3.950 7 H 0.047 0.953 8 C -0.060 4.060 9 N -0.424 5.424 10 C 0.099 3.901 11 C -0.352 4.352 12 C 0.011 3.989 13 N -0.212 5.212 14 H 0.259 0.741 15 C 0.214 3.786 16 C -0.529 4.529 17 H 0.112 0.888 18 C -0.168 4.168 19 N -0.452 5.452 20 Si 0.815 3.185 21 H -0.191 1.191 22 H -0.179 1.179 23 H -0.183 1.183 24 C -0.431 4.431 25 C -0.093 4.093 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.204 0.796 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.680 0.908 2.288 10.960 hybrid contribution -0.051 -0.553 -0.423 0.698 sum -10.731 0.355 1.865 10.898 Atomic orbital electron populations 1.22448 0.85043 1.03245 1.01406 1.62203 1.09864 1.14055 1.42311 1.22794 0.95457 0.89618 1.02448 1.22844 0.93412 0.96831 0.89502 1.88098 1.70921 1.23883 1.48431 1.22200 0.91838 0.83116 0.97811 0.95276 1.21769 0.91793 0.97388 0.95052 1.73380 1.09070 1.21676 1.38317 1.20510 0.93405 0.89257 0.86973 1.22371 0.99932 0.93101 1.19750 1.21956 0.84096 0.99452 0.93391 1.42078 1.04296 1.10491 1.64355 0.74081 1.17705 0.90485 0.85231 0.85134 1.19712 0.91046 1.08494 1.33661 0.88789 1.26907 1.05788 0.93486 0.90617 1.69325 1.41472 1.15411 1.19017 0.84973 0.74936 0.78628 0.79953 1.19095 1.17940 1.18303 1.20164 0.92438 0.94012 1.36444 1.22681 0.94448 0.99983 0.92211 0.90497 0.89672 0.95118 0.93998 0.87308 0.86996 0.93765 0.93514 0.92731 0.84438 0.79627 0.88239 0.89924 0.93973 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.60 127.69 1.23 1.70 16 2 N -0.56 -14.50 4.99 -921.45 -4.59 -19.10 16 3 C 0.02 0.60 5.66 86.31 0.49 1.09 16 4 C 0.05 1.54 7.01 72.01 0.50 2.05 16 5 O -0.39 -16.13 10.42 -148.98 -1.55 -17.68 16 6 C 0.11 4.25 3.05 30.63 0.09 4.34 16 7 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 8 C 0.07 3.09 5.90 86.38 0.51 3.60 16 9 N -0.70 -37.15 10.57 -335.00 -3.54 -40.69 16 10 C 0.26 13.74 6.80 42.30 0.29 14.03 16 11 C -0.32 -13.78 9.34 23.66 0.22 -13.55 16 12 C 0.14 5.29 11.15 83.10 0.93 6.22 16 13 N -0.60 -26.06 4.86 -188.18 -0.92 -26.97 16 14 H 0.42 16.88 6.44 -92.70 -0.60 16.29 16 15 C 0.32 16.52 6.34 38.88 0.25 16.77 16 16 C -0.50 -24.41 9.03 23.26 0.21 -24.20 16 17 H 0.09 4.62 7.89 -2.91 -0.02 4.60 16 18 C 0.05 2.13 5.20 85.39 0.44 2.57 16 19 N -0.83 -35.06 11.15 21.89 0.24 -34.81 16 20 Si 1.00 32.71 29.59 68.60 2.03 34.74 16 21 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 22 H -0.26 -7.63 7.11 99.48 0.71 -6.92 16 23 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 24 C -0.40 -22.34 9.83 23.41 0.23 -22.11 16 25 C 0.04 1.05 4.95 86.31 0.43 1.48 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 2.14 5.32 -2.38 -0.01 2.13 16 35 H 0.14 5.13 6.00 -2.91 -0.02 5.11 16 36 H 0.19 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.31 11.39 8.29 -92.71 -0.77 10.63 16 38 H 0.08 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -65.85 326.36 -2.07 -67.92 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: 0.44 Total: 42.62 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.82 Total: -6.02 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -8.80 Total: -121.57 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.55 Total: -17.68 kcal Atomic # 14 Polarization: 32.71 SS G_CDS: 2.03 Total: 34.74 kcal Total: -65.85 -2.07 -67.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.216 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds