Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47016 * 110.99959 * 2 1 4 4 C 1.53100 * 109.25789 * 182.39412 * 3 2 1 5 5 O 1.43020 * 109.25747 * 303.15014 * 4 3 2 6 6 C 1.43020 * 113.73684 * 58.67520 * 5 4 3 7 7 H 1.09000 * 109.54533 * 61.28483 * 6 5 4 8 8 C 1.52998 * 109.50389 * 181.39741 * 6 5 4 9 9 N 1.46500 * 109.46884 * 299.77645 * 8 6 5 10 10 C 1.32212 * 120.00288 * 238.97166 * 9 8 6 11 11 C 1.46920 * 120.83111 * 354.64554 * 10 9 8 12 12 C 1.34379 * 119.36615 * 180.02562 * 11 10 9 13 13 N 1.36423 * 121.22392 * 359.72976 * 12 11 10 14 14 H 0.96995 * 119.09469 * 180.26872 * 13 12 11 15 15 C 1.37781 * 121.81653 * 0.56587 * 13 12 11 16 16 C 1.40175 * 119.73858 * 179.71054 * 15 13 12 17 17 H 1.08004 * 119.99707 * 155.09396 * 16 15 13 18 18 C 1.40354 * 120.00229 * 335.08850 * 16 15 13 19 19 N 1.30578 * 120.00010 * 342.56517 * 18 16 15 20 20 Si 1.86797 * 119.99671 * 162.56232 * 18 16 15 21 21 H 1.48502 * 109.47592 * 265.33123 * 20 18 16 22 22 H 1.48506 * 109.46944 * 145.33591 * 20 18 16 23 23 H 1.48496 * 109.47312 * 25.33434 * 20 18 16 24 24 C 1.39064 * 120.51241 * 359.43408 * 15 13 12 25 25 C 1.47017 * 111.00299 * 123.63650 * 2 1 3 26 26 H 1.08997 * 109.47074 * 296.36182 * 1 2 3 27 27 H 1.08996 * 109.47556 * 56.36566 * 1 2 3 28 28 H 1.09005 * 109.47219 * 176.36592 * 1 2 3 29 29 H 1.09002 * 109.50547 * 302.32396 * 3 2 1 30 30 H 1.08996 * 109.50627 * 62.46306 * 3 2 1 31 31 H 1.09000 * 109.51037 * 63.08303 * 4 3 2 32 32 H 1.09000 * 109.50920 * 183.17464 * 4 3 2 33 33 H 1.08997 * 109.46888 * 179.78175 * 8 6 5 34 34 H 1.08997 * 109.47852 * 59.77652 * 8 6 5 35 35 H 1.07995 * 120.31690 * 0.05130 * 11 10 9 36 36 H 1.07999 * 119.38651 * 179.97438 * 12 11 10 37 37 H 0.97007 * 120.00134 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.62499 * 180.26016 * 24 15 13 39 39 H 1.08994 * 109.50712 * 57.67154 * 25 2 1 40 40 H 1.08994 * 109.50536 * 297.54380 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0174 0.5574 1.0403 6 6 3.5250 -0.7850 1.0708 7 1 3.8385 -1.3091 0.1680 8 6 4.0825 -1.5058 2.2998 9 7 5.5457 -1.5290 2.2303 10 6 6.1892 -2.6839 2.2280 11 6 5.4658 -3.9493 2.4119 12 6 6.1494 -5.1062 2.4050 13 7 7.5015 -5.1276 2.2251 14 1 7.9634 -5.9805 2.2217 15 6 8.2299 -3.9707 2.0542 16 6 9.6188 -4.0429 1.8789 17 1 10.1396 -3.2511 1.3609 18 6 10.3326 -5.1442 2.3764 19 7 9.7927 -5.9187 3.2785 20 14 12.0550 -5.5019 1.7481 21 1 11.9832 -6.4896 0.6416 22 1 12.8798 -6.0548 2.8523 23 1 12.6714 -4.2457 1.2510 24 6 7.5973 -2.7323 2.0486 25 6 1.9959 -0.7603 1.1427 26 1 -0.3633 0.4563 0.9208 27 1 -0.3634 0.5692 -0.8556 28 1 -0.3634 -1.0256 -0.0651 29 1 1.6133 1.9092 -0.8682 30 1 1.6828 1.8825 0.9110 31 1 3.8385 0.8644 -0.9964 32 1 3.9221 2.3399 -0.0037 33 1 3.7037 -2.5275 2.3247 34 1 3.7700 -0.9804 3.2022 35 1 4.3948 -3.9498 2.5507 36 1 5.6180 -6.0366 2.5405 37 1 10.2860 -6.6801 3.6221 38 1 8.1659 -1.8246 1.9106 39 1 1.6134 -1.7803 1.1087 40 1 1.6828 -0.2843 2.0719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162689499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = 1.928112 kcal Electronic energy + Delta-G solvation = -21058.734803 eV Core-core repulsion = 17873.492821 eV Total energy + Delta-G solvation = -3185.241981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.34155 -38.50676 -35.57469 -34.80003 -33.60290 -31.63096 -30.56224 -29.03940 -28.26971 -26.49102 -24.99118 -23.94677 -22.13480 -21.40855 -20.19724 -19.86937 -17.97905 -16.60524 -16.08172 -16.01112 -15.56216 -15.18231 -14.93108 -14.78633 -14.22761 -14.07899 -13.61182 -13.53349 -12.96673 -12.79426 -12.50034 -12.35584 -12.15826 -11.82497 -11.59069 -11.48334 -11.09653 -11.05966 -10.99102 -10.77795 -10.62269 -10.32098 -10.12177 -9.66575 -9.27872 -9.19923 -8.40696 -8.20369 -7.44870 -7.24754 -5.93373 -4.73132 2.61688 2.76302 2.90699 2.96126 3.17926 3.67912 3.82959 4.19181 4.32697 4.63892 4.93863 5.04709 5.08937 5.28219 5.36257 5.37914 5.48876 5.52808 5.59385 5.69267 5.70486 5.78581 5.94924 5.98154 6.11498 6.20208 6.41675 6.59337 6.73411 6.78940 6.82106 6.88775 6.92716 6.93115 7.43179 7.68028 7.75349 7.80030 8.02441 8.28717 8.32478 8.83015 8.94793 9.74773 9.79671 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037523 B = 0.003300 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.029914 B = 8483.510670 C = 8938.101391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.018 3.982 4 C 0.059 3.941 5 O -0.356 6.356 6 C 0.107 3.893 7 H 0.057 0.943 8 C 0.069 3.931 9 N -0.653 5.653 10 C 0.279 3.721 11 C -0.305 4.305 12 C 0.127 3.873 13 N -0.602 5.602 14 H 0.412 0.588 15 C 0.331 3.669 16 C -0.469 4.469 17 H 0.103 0.897 18 C 0.077 3.923 19 N -0.813 5.813 20 Si 0.922 3.078 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.256 1.256 24 C -0.354 4.354 25 C 0.024 3.976 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.291 0.709 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 1.580 -4.391 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.110 4.110 4 C -0.019 4.019 5 O -0.274 6.274 6 C 0.048 3.952 7 H 0.075 0.925 8 C -0.063 4.063 9 N -0.379 5.379 10 C 0.115 3.885 11 C -0.335 4.335 12 C -0.002 4.002 13 N -0.212 5.212 14 H 0.250 0.750 15 C 0.222 3.778 16 C -0.502 4.502 17 H 0.121 0.879 18 C -0.141 4.141 19 N -0.441 5.441 20 Si 0.746 3.254 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.180 1.180 24 C -0.383 4.383 25 C -0.105 4.105 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.731 2.239 -4.556 10.975 hybrid contribution -0.346 -1.113 0.548 1.288 sum -10.076 1.126 -4.008 10.903 Atomic orbital electron populations 1.22366 0.87437 1.02184 1.00289 1.62198 1.07722 1.13779 1.43129 1.22829 0.97544 0.89587 1.01035 1.22584 0.91212 0.96736 0.91325 1.88194 1.69409 1.23308 1.46442 1.22304 0.89123 0.83701 1.00039 0.92506 1.21707 0.94149 0.96259 0.94191 1.73502 1.03315 1.22931 1.38121 1.20327 0.93645 0.87409 0.87078 1.22283 0.99176 0.93926 1.18140 1.21219 0.84564 0.98331 0.96130 1.42002 1.04780 1.10462 1.63975 0.74950 1.17613 0.90742 0.83870 0.85534 1.19511 0.90896 1.05949 1.33865 0.87893 1.26173 1.01738 0.94377 0.91858 1.69420 1.40442 1.14277 1.19933 0.86032 0.80066 0.80028 0.79267 1.19071 1.20020 1.17959 1.20216 0.91731 0.94615 1.31711 1.22881 0.97493 0.98728 0.91403 0.95757 0.91474 0.91320 0.90196 0.94252 0.92837 0.88948 0.94127 0.93482 0.86618 0.85241 0.89798 0.86849 0.90071 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.06 0.58 0.84 16 2 N -0.54 -7.44 4.99 -242.60 -1.21 -8.65 16 3 C 0.02 0.23 5.66 -3.71 -0.02 0.21 16 4 C 0.06 0.89 7.01 37.21 0.26 1.15 16 5 O -0.36 -7.03 10.34 -35.23 -0.36 -7.40 16 6 C 0.11 2.02 3.08 -26.68 -0.08 1.94 16 7 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.07 1.44 5.96 -4.04 -0.02 1.42 16 9 N -0.65 -16.50 10.49 -57.24 -0.60 -17.10 16 10 C 0.28 7.00 6.80 -82.74 -0.56 6.44 16 11 C -0.31 -6.56 9.38 -37.43 -0.35 -6.91 16 12 C 0.13 2.51 11.15 -16.87 -0.19 2.32 16 13 N -0.60 -13.19 4.87 -10.83 -0.05 -13.24 16 14 H 0.41 8.56 6.52 -40.82 -0.27 8.29 16 15 C 0.33 8.17 6.33 -84.16 -0.53 7.64 16 16 C -0.47 -11.24 9.02 -38.06 -0.34 -11.59 16 17 H 0.10 2.42 7.91 -52.48 -0.42 2.01 16 18 C 0.08 1.68 5.15 -17.29 -0.09 1.59 16 19 N -0.81 -17.93 11.28 55.57 0.63 -17.31 16 20 Si 0.92 16.54 29.60 -169.99 -5.03 11.51 16 21 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 22 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 24 C -0.35 -9.23 9.83 -37.82 -0.37 -9.60 16 25 C 0.02 0.35 4.95 -3.71 -0.02 0.34 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.79 5.23 -51.93 -0.27 0.52 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.12 2.22 5.91 -52.49 -0.31 1.91 16 36 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.29 5.78 8.29 -40.82 -0.34 5.44 16 38 H 0.11 3.05 8.06 -52.49 -0.42 2.63 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -28.72 326.31 -9.35 -38.08 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.89 Total: 13.40 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.75 Total: -4.21 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.24 Total: -56.30 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.36 Total: -7.40 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.72 -9.35 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.003 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds