Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36917 * 119.99856 * 2 1 4 4 H 1.08005 * 119.99358 * 158.47911 * 3 2 1 5 5 C 1.38813 * 120.00371 * 338.21023 * 3 2 1 6 6 N 1.31569 * 119.99615 * 350.39338 * 5 3 2 7 7 Si 1.86795 * 120.00086 * 170.38885 * 5 3 2 8 8 H 1.48501 * 109.47088 * 89.99987 * 7 5 3 9 9 H 1.48500 * 109.47270 * 209.99818 * 7 5 3 10 10 H 1.48498 * 109.47280 * 330.00409 * 7 5 3 11 11 C 1.38835 * 119.99809 * 180.02562 * 2 1 3 12 12 C 1.39234 * 119.70947 * 184.72629 * 11 2 1 13 13 C 1.38305 * 119.08628 * 179.73305 * 12 11 2 14 14 C 1.38882 * 118.51094 * 0.53028 * 13 12 11 15 15 C 1.50701 * 120.33524 * 179.71278 * 14 13 12 16 16 N 1.46908 * 109.46695 * 270.01963 * 15 14 13 17 17 C 1.47011 * 111.00029 * 293.63309 * 16 15 14 18 18 C 1.53099 * 109.25736 * 177.60747 * 17 16 15 19 19 O 1.43017 * 109.25607 * 56.84885 * 18 17 16 20 20 C 1.43014 * 113.73926 * 301.32649 * 19 18 17 21 21 C 1.47009 * 110.99600 * 169.99742 * 16 15 14 22 22 C 1.38130 * 119.33886 * 359.73024 * 14 13 12 23 23 N 1.31901 * 120.86366 * 359.97438 * 22 14 13 24 24 H 1.08996 * 109.47402 * 85.92062 * 1 2 3 25 25 H 1.08999 * 109.47284 * 205.92895 * 1 2 3 26 26 H 1.09002 * 109.46754 * 325.92323 * 1 2 3 27 27 H 0.97004 * 119.99536 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.45217 * 359.97438 * 12 11 2 29 29 H 1.08000 * 120.74591 * 180.28097 * 13 12 11 30 30 H 1.08999 * 109.47036 * 30.01607 * 15 14 13 31 31 H 1.08994 * 109.47138 * 150.02247 * 15 14 13 32 32 H 1.08998 * 109.50871 * 297.54210 * 17 16 15 33 33 H 1.09002 * 109.50987 * 57.67460 * 17 16 15 34 34 H 1.08997 * 109.50519 * 296.91732 * 18 17 16 35 35 H 1.08994 * 109.53952 * 176.80478 * 18 17 16 36 36 H 1.08995 * 109.51037 * 298.73876 * 20 19 18 37 37 H 1.08997 * 109.54184 * 178.62399 * 20 19 18 38 38 H 1.08995 * 109.51140 * 302.32409 * 21 16 15 39 39 H 1.08999 * 109.51074 * 62.41869 * 21 16 15 40 40 H 1.07993 * 119.56997 * 179.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1858 0.0000 4 1 3.1731 1.2183 0.3431 5 6 1.5299 2.3450 -0.4462 6 7 0.3592 2.2772 -1.0428 7 14 2.3581 4.0010 -0.1996 8 1 3.2166 4.3047 -1.3727 9 1 1.3228 5.0561 -0.0576 10 1 3.1935 3.9589 1.0274 11 6 2.1591 -1.2024 -0.0005 12 6 3.5479 -1.1975 0.0991 13 6 4.2259 -2.4029 0.1029 14 6 3.4917 -3.5768 -0.0045 15 6 4.1890 -4.9128 -0.0112 16 7 4.5201 -5.2854 -1.3931 17 6 3.3021 -5.5302 -2.1790 18 6 3.6903 -5.8561 -3.6236 19 8 4.5751 -6.9797 -3.6322 20 6 5.7722 -6.7755 -2.8769 21 6 5.4051 -6.4589 -1.4246 22 6 2.1158 -3.5077 -0.1057 23 7 1.4946 -2.3442 -0.1008 24 1 -0.3634 0.0731 -1.0250 25 1 -0.3634 -0.9242 0.4493 26 1 -0.3633 0.8512 0.5758 27 1 -0.0736 3.0873 -1.3549 28 1 4.0878 -0.2653 0.1763 29 1 5.3026 -2.4305 0.1836 30 1 5.1045 -4.8477 0.5769 31 1 3.5323 -5.6676 0.4212 32 1 2.7552 -6.3702 -1.7507 33 1 2.6735 -4.6398 -2.1631 34 1 4.1899 -4.9960 -4.0691 35 1 2.7944 -6.0940 -4.1970 36 1 6.3324 -5.9421 -3.3007 37 1 6.3823 -7.6782 -2.9095 38 1 6.3117 -6.2464 -0.8581 39 1 4.8922 -7.3136 -0.9836 40 1 1.5413 -4.4183 -0.1898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165092181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = 18.087847 kcal Electronic energy + Delta-G solvation = -21489.317730 eV Core-core repulsion = 18304.776488 eV Total energy + Delta-G solvation = -3184.541243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70558 -38.92834 -36.40074 -35.27965 -32.23978 -31.36202 -31.16753 -29.95499 -27.35844 -26.56724 -24.67278 -24.02288 -22.96523 -21.89194 -20.54487 -20.10494 -17.60312 -16.54274 -16.36935 -16.12685 -15.41451 -15.05836 -15.05231 -14.68467 -14.55796 -13.97568 -13.66472 -13.55079 -13.39963 -12.87825 -12.50105 -12.08552 -11.99176 -11.86105 -11.49688 -11.38080 -11.20377 -11.16611 -10.90524 -10.77074 -10.57092 -10.45098 -10.31265 -9.65343 -9.43616 -8.81626 -8.62461 -8.28759 -8.19257 -6.83129 -6.42670 -3.87833 2.31201 2.47770 3.09878 3.12979 3.16495 3.81144 3.94398 4.03472 4.72522 4.77367 4.88513 5.04481 5.06767 5.14132 5.20409 5.29295 5.47527 5.54882 5.56370 5.61113 5.68317 5.76866 5.89204 5.94387 6.00530 6.02268 6.36209 6.48997 6.72808 6.81198 6.98399 7.00402 7.09825 7.12272 7.21601 7.27049 7.33591 7.42277 7.64320 7.96782 8.45457 9.00075 9.19850 9.69244 10.52660 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.003756 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.107447 B = 7453.396010 C = 7527.428288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.420 5.420 3 C -0.309 4.309 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.869 5.869 7 Si 0.931 3.069 8 H -0.275 1.275 9 H -0.280 1.280 10 H -0.268 1.268 11 C 0.367 3.633 12 C -0.254 4.254 13 C -0.012 4.012 14 C -0.271 4.271 15 C 0.127 3.873 16 N -0.532 5.532 17 C 0.019 3.981 18 C 0.063 3.937 19 O -0.390 6.390 20 C 0.064 3.936 21 C 0.017 3.983 22 C 0.165 3.835 23 N -0.571 5.571 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.271 0.729 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 -12.333 -0.535 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.107 5.107 3 C -0.438 4.438 4 H 0.117 0.883 5 C -0.175 4.175 6 N -0.504 5.504 7 Si 0.757 3.243 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.193 1.193 11 C 0.125 3.875 12 C -0.281 4.281 13 C -0.037 4.037 14 C -0.281 4.281 15 C 0.000 4.000 16 N -0.258 5.258 17 C -0.109 4.109 18 C -0.013 4.013 19 O -0.309 6.309 20 C -0.013 4.013 21 C -0.112 4.112 22 C 0.001 3.999 23 N -0.291 5.291 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.998 -11.524 -0.997 13.030 hybrid contribution 0.823 0.472 0.608 1.127 sum 6.820 -11.053 -0.389 12.993 Atomic orbital electron populations 1.21356 0.79668 0.98607 1.01675 1.42551 1.05163 1.01306 1.61719 1.19680 0.99093 0.83800 1.41226 0.88271 1.25421 0.96506 1.00270 0.95315 1.70126 1.15401 1.29524 1.35372 0.85843 0.78787 0.80585 0.79048 1.20073 1.20566 1.19253 1.18443 0.88351 0.86143 0.94518 1.21132 0.93738 0.98233 1.15003 1.20776 0.98110 0.91475 0.93351 1.19643 0.94442 0.94072 1.19912 1.20601 0.98374 0.93765 0.87302 1.62329 1.15861 1.33938 1.13667 1.22784 0.92642 1.01388 0.94125 1.22689 0.93735 0.89072 0.95852 1.87941 1.31550 1.39410 1.72013 1.22629 0.87096 1.01424 0.90137 1.22763 0.98134 0.92392 0.97884 1.21836 0.90955 0.94103 0.93021 1.67137 1.40235 0.97392 1.24324 0.92691 0.94273 0.92115 0.91889 0.86095 0.87264 0.91124 0.95154 0.94439 0.88712 0.92264 0.88657 0.92388 0.88914 0.89945 0.94419 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.21 8.70 59.85 0.52 3.73 16 2 N -0.42 -10.83 3.12 -122.43 -0.38 -11.21 16 3 C -0.31 -8.02 9.14 -15.07 -0.14 -8.16 16 4 H 0.10 2.46 5.96 -52.48 -0.31 2.15 16 5 C 0.03 0.77 5.16 -17.45 -0.09 0.68 16 6 N -0.87 -22.81 10.46 55.49 0.58 -22.23 16 7 Si 0.93 19.50 29.56 -169.99 -5.03 14.48 16 8 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 9 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 11 C 0.37 8.86 7.33 -155.07 -1.14 7.72 16 12 C -0.25 -5.57 9.32 -39.19 -0.37 -5.93 16 13 C -0.01 -0.22 9.85 -39.32 -0.39 -0.60 16 14 C -0.27 -4.75 4.91 -104.42 -0.51 -5.27 16 15 C 0.13 1.79 5.14 -4.97 -0.03 1.76 16 16 N -0.53 -7.30 4.72 -235.75 -1.11 -8.41 16 17 C 0.02 0.25 5.28 -3.71 -0.02 0.23 16 18 C 0.06 0.79 7.01 37.21 0.26 1.05 16 19 O -0.39 -5.08 10.83 -35.23 -0.38 -5.46 16 20 C 0.06 0.69 7.01 37.21 0.26 0.95 16 21 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 22 C 0.16 3.13 9.10 -17.56 -0.16 2.97 16 23 N -0.57 -12.94 9.09 -12.43 -0.11 -13.05 16 24 H 0.05 1.42 7.45 -51.93 -0.39 1.04 16 25 H 0.04 0.90 7.32 -51.93 -0.38 0.52 16 26 H 0.06 1.51 7.09 -51.93 -0.37 1.15 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.12 2.63 6.08 -52.49 -0.32 2.31 16 29 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 31 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.45 6.02 -51.93 -0.31 1.14 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.13 2.06 8.00 -52.49 -0.42 1.64 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -28.23 319.98 -9.27 -37.51 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.85 Total: 4.25 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.81 Total: -0.70 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -1.03 Total: -54.91 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.23 -9.27 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.596 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds