Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36917 * 119.99856 * 2 1 4 4 H 1.08005 * 119.99358 * 158.47911 * 3 2 1 5 5 C 1.38813 * 120.00371 * 338.21023 * 3 2 1 6 6 N 1.31569 * 119.99615 * 350.39338 * 5 3 2 7 7 Si 1.86795 * 120.00086 * 170.38885 * 5 3 2 8 8 H 1.48501 * 109.47088 * 89.99987 * 7 5 3 9 9 H 1.48500 * 109.47270 * 209.99818 * 7 5 3 10 10 H 1.48498 * 109.47280 * 330.00409 * 7 5 3 11 11 C 1.38835 * 119.99809 * 180.02562 * 2 1 3 12 12 C 1.39234 * 119.70947 * 184.72629 * 11 2 1 13 13 C 1.38305 * 119.08628 * 179.73305 * 12 11 2 14 14 C 1.38882 * 118.51094 * 0.53028 * 13 12 11 15 15 C 1.50701 * 120.33524 * 179.71278 * 14 13 12 16 16 N 1.46908 * 109.46695 * 270.01963 * 15 14 13 17 17 C 1.47011 * 111.00029 * 293.63309 * 16 15 14 18 18 C 1.53099 * 109.25736 * 177.60747 * 17 16 15 19 19 O 1.43017 * 109.25607 * 56.84885 * 18 17 16 20 20 C 1.43014 * 113.73926 * 301.32649 * 19 18 17 21 21 C 1.47009 * 110.99600 * 169.99742 * 16 15 14 22 22 C 1.38130 * 119.33886 * 359.73024 * 14 13 12 23 23 N 1.31901 * 120.86366 * 359.97438 * 22 14 13 24 24 H 1.08996 * 109.47402 * 85.92062 * 1 2 3 25 25 H 1.08999 * 109.47284 * 205.92895 * 1 2 3 26 26 H 1.09002 * 109.46754 * 325.92323 * 1 2 3 27 27 H 0.97004 * 119.99536 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.45217 * 359.97438 * 12 11 2 29 29 H 1.08000 * 120.74591 * 180.28097 * 13 12 11 30 30 H 1.08999 * 109.47036 * 30.01607 * 15 14 13 31 31 H 1.08994 * 109.47138 * 150.02247 * 15 14 13 32 32 H 1.08998 * 109.50871 * 297.54210 * 17 16 15 33 33 H 1.09002 * 109.50987 * 57.67460 * 17 16 15 34 34 H 1.08997 * 109.50519 * 296.91732 * 18 17 16 35 35 H 1.08994 * 109.53952 * 176.80478 * 18 17 16 36 36 H 1.08995 * 109.51037 * 298.73876 * 20 19 18 37 37 H 1.08997 * 109.54184 * 178.62399 * 20 19 18 38 38 H 1.08995 * 109.51140 * 302.32409 * 21 16 15 39 39 H 1.08999 * 109.51074 * 62.41869 * 21 16 15 40 40 H 1.07993 * 119.56997 * 179.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1858 0.0000 4 1 3.1731 1.2183 0.3431 5 6 1.5299 2.3450 -0.4462 6 7 0.3592 2.2772 -1.0428 7 14 2.3581 4.0010 -0.1996 8 1 3.2166 4.3047 -1.3727 9 1 1.3228 5.0561 -0.0576 10 1 3.1935 3.9589 1.0274 11 6 2.1591 -1.2024 -0.0005 12 6 3.5479 -1.1975 0.0991 13 6 4.2259 -2.4029 0.1029 14 6 3.4917 -3.5768 -0.0045 15 6 4.1890 -4.9128 -0.0112 16 7 4.5201 -5.2854 -1.3931 17 6 3.3021 -5.5302 -2.1790 18 6 3.6903 -5.8561 -3.6236 19 8 4.5751 -6.9797 -3.6322 20 6 5.7722 -6.7755 -2.8769 21 6 5.4051 -6.4589 -1.4246 22 6 2.1158 -3.5077 -0.1057 23 7 1.4946 -2.3442 -0.1008 24 1 -0.3634 0.0731 -1.0250 25 1 -0.3634 -0.9242 0.4493 26 1 -0.3633 0.8512 0.5758 27 1 -0.0736 3.0873 -1.3549 28 1 4.0878 -0.2653 0.1763 29 1 5.3026 -2.4305 0.1836 30 1 5.1045 -4.8477 0.5769 31 1 3.5323 -5.6676 0.4212 32 1 2.7552 -6.3702 -1.7507 33 1 2.6735 -4.6398 -2.1631 34 1 4.1899 -4.9960 -4.0691 35 1 2.7944 -6.0940 -4.1970 36 1 6.3324 -5.9421 -3.3007 37 1 6.3823 -7.6782 -2.9095 38 1 6.3117 -6.2464 -0.8581 39 1 4.8922 -7.3136 -0.9836 40 1 1.5413 -4.4183 -0.1898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165092181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = 0.413458 kcal Electronic energy + Delta-G solvation = -21490.084149 eV Core-core repulsion = 18304.776488 eV Total energy + Delta-G solvation = -3185.307662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07287 -40.22713 -37.96688 -36.57381 -33.95210 -33.03027 -32.14031 -31.44652 -28.66841 -28.41449 -26.18759 -25.05630 -24.40735 -23.49210 -22.01560 -21.22802 -19.38199 -18.22651 -17.47547 -17.18582 -16.89724 -16.48462 -16.18130 -15.94422 -15.75733 -15.48777 -15.26795 -15.07005 -14.80766 -14.38864 -13.81597 -13.66898 -13.37543 -13.26040 -12.97140 -12.88150 -12.62740 -12.50702 -12.31706 -12.23149 -12.11341 -11.93593 -11.51134 -11.25150 -10.66089 -10.48036 -10.35481 -9.95028 -9.27087 -8.60424 -8.25956 -5.81029 0.69600 0.85119 1.41948 1.46414 1.55071 2.23205 2.78941 2.93795 3.01172 3.08616 3.48231 3.91658 3.93964 4.08335 4.09760 4.23173 4.29735 4.34363 4.43731 4.52771 4.58737 4.67922 4.75687 4.77462 4.85936 4.88904 4.95179 4.97351 5.00459 5.06984 5.21576 5.32318 5.38293 5.46219 5.75550 5.91744 6.05253 6.11226 6.21375 6.26907 6.62529 7.23312 7.37576 7.90712 8.69638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.003756 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.107447 B = 7453.396010 C = 7527.428288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.456 5.456 3 C -0.330 4.330 4 H 0.101 0.899 5 C -0.017 4.017 6 N -0.907 5.907 7 Si 0.999 3.001 8 H -0.273 1.273 9 H -0.278 1.278 10 H -0.260 1.260 11 C 0.350 3.650 12 C -0.273 4.273 13 C -0.006 4.006 14 C -0.243 4.243 15 C 0.129 3.871 16 N -0.546 5.546 17 C 0.021 3.979 18 C 0.065 3.935 19 O -0.403 6.403 20 C 0.059 3.941 21 C 0.019 3.981 22 C 0.154 3.846 23 N -0.593 5.593 24 H 0.029 0.971 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.270 0.730 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.043 0.957 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -14.560 -0.111 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.148 5.148 3 C -0.459 4.459 4 H 0.119 0.881 5 C -0.218 4.218 6 N -0.544 5.544 7 Si 0.822 3.178 8 H -0.198 1.198 9 H -0.204 1.204 10 H -0.184 1.184 11 C 0.111 3.889 12 C -0.300 4.300 13 C -0.032 4.032 14 C -0.251 4.251 15 C 0.002 3.998 16 N -0.272 5.272 17 C -0.107 4.107 18 C -0.012 4.012 19 O -0.322 6.322 20 C -0.017 4.017 21 C -0.109 4.109 22 C -0.008 4.008 23 N -0.313 5.313 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.416 -13.836 -0.567 16.205 hybrid contribution 0.242 0.768 0.464 0.930 sum 8.658 -13.068 -0.103 15.676 Atomic orbital electron populations 1.20988 0.80135 0.98076 0.99758 1.42608 1.05058 1.01859 1.65295 1.19933 0.99475 0.84569 1.41893 0.88144 1.26294 0.97133 1.03427 0.94945 1.70248 1.16900 1.30147 1.37108 0.84829 0.77741 0.76146 0.79061 1.19835 1.20365 1.18384 1.18833 0.89386 0.86253 0.94414 1.21269 0.93092 0.99527 1.16097 1.21172 0.99792 0.90542 0.91673 1.20115 0.93990 0.95734 1.15232 1.20620 0.99279 0.91675 0.88227 1.62246 1.16099 1.35816 1.13038 1.22719 0.92551 1.00523 0.94927 1.22677 0.94273 0.88863 0.95353 1.87934 1.32293 1.39450 1.72539 1.22839 0.86530 1.02715 0.89625 1.22837 0.98245 0.91355 0.98420 1.22393 0.92208 0.93846 0.92312 1.67140 1.41341 0.98086 1.24757 0.95220 0.93656 0.93536 0.92027 0.86615 0.83994 0.88983 0.93754 0.93784 0.90903 0.93168 0.87388 0.92668 0.86300 0.87968 0.93912 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.01 8.70 127.77 1.11 9.12 16 2 N -0.46 -24.46 3.12 -541.25 -1.69 -26.15 16 3 C -0.33 -17.76 9.14 84.04 0.77 -16.99 16 4 H 0.10 5.15 5.96 -2.91 -0.02 5.13 16 5 C -0.02 -0.89 5.16 84.87 0.44 -0.45 16 6 N -0.91 -49.79 10.46 21.65 0.23 -49.56 16 7 Si 1.00 40.94 29.56 68.60 2.03 42.97 16 8 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 9 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 11 C 0.35 17.19 7.33 133.12 0.98 18.16 16 12 C -0.27 -11.88 9.32 22.53 0.21 -11.67 16 13 C -0.01 -0.22 9.85 22.44 0.22 0.01 16 14 C -0.24 -7.77 4.91 -19.74 -0.10 -7.87 16 15 C 0.13 3.08 5.14 85.56 0.44 3.52 16 16 N -0.55 -12.96 4.72 -899.78 -4.24 -17.20 16 17 C 0.02 0.52 5.28 86.32 0.46 0.98 16 18 C 0.07 1.50 7.01 72.02 0.50 2.01 16 19 O -0.40 -9.39 10.83 -148.98 -1.61 -11.00 16 20 C 0.06 1.07 7.01 72.02 0.50 1.57 16 21 C 0.02 0.35 5.64 86.32 0.49 0.83 16 22 C 0.15 5.58 9.10 84.66 0.77 6.35 16 23 N -0.59 -26.88 9.09 -193.22 -1.76 -28.64 16 24 H 0.03 1.63 7.45 -2.39 -0.02 1.61 16 25 H 0.04 2.19 7.32 -2.39 -0.02 2.17 16 26 H 0.05 2.46 7.09 -2.39 -0.02 2.44 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.12 5.09 6.08 -2.91 -0.02 5.07 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.09 1.88 7.99 -2.39 -0.02 1.86 16 31 H 0.04 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 2.10 6.02 -2.39 -0.01 2.09 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.15 4.62 8.00 -2.91 -0.02 4.60 16 Total: -1.00 -62.76 319.98 0.77 -61.99 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.03 Total: 22.03 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 6.79 Total: 5.56 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -7.46 Total: -121.55 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.61 Total: -11.00 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -62.76 0.77 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.404 kcal (2) G-P(sol) polarization free energy of solvation -62.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds