Wall clock time and date at job start Mon Mar 30 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35547 * 117.00110 * 2 1 4 4 C 1.38912 * 120.46909 * 179.97438 * 3 2 1 5 5 C 1.39245 * 118.29082 * 180.02562 * 4 3 2 6 6 N 1.38604 * 120.49844 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99862 * 191.52467 * 6 5 4 8 8 C 1.50706 * 109.46750 * 269.99542 * 7 6 5 9 9 H 1.07994 * 119.99901 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99886 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00161 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99906 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47264 * 90.00293 * 12 10 8 14 14 H 1.48503 * 109.47316 * 209.99895 * 12 10 8 15 15 H 1.48505 * 109.47334 * 330.00214 * 12 10 8 16 16 C 1.46498 * 120.00099 * 11.51748 * 6 5 4 17 17 C 1.53876 * 110.03182 * 237.50506 * 16 6 5 18 18 C 1.54268 * 106.63799 * 240.69050 * 17 16 6 19 19 C 1.54966 * 104.16392 * 336.44842 * 18 17 16 20 20 C 1.54275 * 110.03137 * 120.34016 * 16 6 5 21 21 N 1.33151 * 118.99897 * 0.27291 * 5 4 3 22 22 C 1.31722 * 120.83965 * 359.44370 * 21 5 4 23 23 N 1.31780 * 121.88713 * 0.57514 * 22 21 5 24 24 H 1.08998 * 109.47310 * 300.00294 * 1 2 3 25 25 H 1.08998 * 109.47011 * 60.00770 * 1 2 3 26 26 H 1.09004 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.85756 * 0.04078 * 4 3 2 28 28 H 1.09001 * 109.47405 * 29.99566 * 7 6 5 29 29 H 1.08994 * 109.47662 * 149.99696 * 7 6 5 30 30 H 0.96994 * 120.00240 * 180.02562 * 11 10 8 31 31 H 1.08992 * 110.01844 * 358.90153 * 16 6 5 32 32 H 1.08997 * 110.03335 * 0.02562 * 17 16 6 33 33 H 1.09003 * 110.03098 * 121.38695 * 17 16 6 34 34 H 1.09001 * 110.48484 * 95.09458 * 18 17 16 35 35 H 1.09004 * 110.48745 * 217.73532 * 18 17 16 36 36 H 1.09001 * 110.71773 * 279.57310 * 19 18 17 37 37 H 1.08999 * 110.76243 * 156.22020 * 19 18 17 38 38 H 1.08999 * 110.48337 * 261.57798 * 20 16 6 39 39 H 1.08997 * 110.48236 * 24.08240 * 20 16 6 40 40 H 1.07996 * 119.05674 * 180.26559 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4309 1.2917 0.0005 5 6 4.0155 2.5556 0.0011 6 7 5.3948 2.6926 0.0011 7 6 6.0007 4.0020 0.2551 8 6 6.1804 4.7340 -1.0500 9 1 5.8736 4.2704 -1.9758 10 6 6.7357 5.9960 -1.0618 11 7 7.1089 6.5608 0.0658 12 14 6.9578 6.9035 -2.6793 13 1 5.7421 7.7062 -2.9675 14 1 8.1345 7.8044 -2.5839 15 1 7.1733 5.9216 -3.7723 16 6 6.2466 1.5281 -0.2528 17 6 7.2089 1.3115 0.9283 18 6 8.6384 1.4352 0.3617 19 6 8.4784 1.1114 -1.1453 20 6 7.1246 1.7768 -1.4967 21 7 3.2295 3.6303 0.0066 22 6 1.9180 3.5078 0.0005 23 7 1.3290 2.3290 0.0000 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0400 0.3998 0.0003 28 1 5.3511 4.5821 0.9105 29 1 6.9712 3.8669 0.7325 30 1 7.4991 7.4488 0.0575 31 1 5.6312 0.6408 -0.4006 32 1 7.0418 2.0725 1.6905 33 1 7.0604 0.3189 1.3536 34 1 9.0155 2.4490 0.4959 35 1 9.3018 0.7141 0.8393 36 1 8.4325 0.0342 -1.3055 37 1 9.2886 1.5550 -1.7239 38 1 6.6841 1.3049 -2.3750 39 1 7.2548 2.8459 -1.6642 40 1 1.3080 4.3990 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:21 Heat of formation + Delta-G solvation = 14.730031 kcal Electronic energy + Delta-G solvation = -22098.831621 eV Core-core repulsion = 18914.144772 eV Total energy + Delta-G solvation = -3184.686848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56445 -38.69013 -37.77319 -34.83483 -32.77967 -31.69261 -30.63736 -28.31564 -28.05524 -27.33262 -26.02853 -23.73013 -23.04791 -21.52937 -20.26880 -19.30024 -17.97248 -17.29107 -16.42238 -16.09659 -15.82169 -15.20389 -14.87374 -14.68127 -14.33486 -14.12581 -13.84754 -13.53060 -12.96122 -12.78323 -12.38654 -11.90399 -11.76799 -11.37843 -11.26871 -11.25304 -10.88897 -10.76645 -10.65590 -10.62234 -10.39864 -10.28358 -10.17239 -10.02831 -9.62065 -9.35262 -8.72981 -8.60876 -8.41938 -7.10988 -6.03193 -4.06742 1.68133 2.03522 3.18016 3.30294 3.36887 3.39349 3.74702 4.42770 4.50694 4.64079 4.94692 5.04890 5.14563 5.25444 5.29195 5.30436 5.37769 5.49558 5.64208 5.68332 5.84720 5.94771 5.95949 5.97864 6.02163 6.05356 6.24286 6.28938 6.36793 6.49313 6.65250 6.67477 6.94865 7.12957 7.33678 7.47652 7.59944 7.84829 8.09294 8.23252 8.24813 8.90759 8.99484 9.55779 11.03180 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.006472 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.991000 B = 4325.421418 C = 5624.022485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.376 3.624 4 C -0.335 4.335 5 C 0.469 3.531 6 N -0.565 5.565 7 C 0.253 3.747 8 C -0.513 4.513 9 H 0.058 0.942 10 C 0.063 3.937 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.147 3.853 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.149 4.149 21 N -0.564 5.564 22 C 0.364 3.636 23 N -0.633 5.633 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.138 0.862 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -11.982 0.507 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.193 3.807 4 C -0.364 4.364 5 C 0.226 3.774 6 N -0.271 5.271 7 C 0.135 3.865 8 C -0.552 4.552 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.200 1.200 16 C 0.042 3.958 17 C -0.172 4.172 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.187 4.187 21 N -0.290 5.290 22 C 0.073 3.927 23 N -0.370 5.370 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.155 0.845 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.675 -11.317 0.606 12.260 hybrid contribution 0.285 0.006 -0.922 0.966 sum -4.390 -11.311 -0.316 12.137 Atomic orbital electron populations 1.22786 0.77670 1.02299 1.02483 1.86172 1.22592 1.25149 1.87743 1.19558 0.88752 0.84536 0.87841 1.20943 0.92679 0.98794 1.24020 1.18301 0.86532 0.87412 0.85144 1.47334 0.99768 1.11320 1.68680 1.19316 0.93448 0.76655 0.97127 1.21362 1.39969 1.00690 0.93142 0.92389 1.24885 0.95616 0.97106 0.96257 1.69920 1.42184 1.15675 1.25543 0.86590 0.77621 0.79795 0.83951 1.20631 1.21306 1.20034 1.21729 0.91382 0.87753 0.94902 1.22509 0.94992 1.01466 0.98226 1.22316 0.96072 1.01870 0.95514 1.22414 0.97782 0.99366 0.96201 1.23072 0.94115 1.05430 0.96129 1.68249 1.05449 1.32077 1.23216 1.24328 0.87874 0.93306 0.87172 1.68015 1.41376 0.98992 1.28612 0.92398 0.92399 0.89140 0.84479 0.93876 0.94618 0.92813 0.90139 0.90679 0.91982 0.90900 0.92367 0.92409 0.91712 0.92580 0.86577 0.79311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.41 101.05 1.05 1.54 16 2 O -0.31 -4.79 10.49 -18.33 -0.19 -4.98 16 3 C 0.38 6.64 7.52 -16.79 -0.13 6.51 16 4 C -0.33 -6.12 9.30 -38.96 -0.36 -6.49 16 5 C 0.47 9.73 7.33 -154.72 -1.13 8.59 16 6 N -0.56 -11.74 2.49 -166.22 -0.41 -12.15 16 7 C 0.25 6.20 4.47 -5.19 -0.02 6.18 16 8 C -0.51 -13.57 7.40 -34.44 -0.25 -13.82 16 9 H 0.06 1.57 7.29 -52.49 -0.38 1.19 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.15 2.53 3.23 -66.81 -0.22 2.31 16 17 C -0.13 -2.06 5.97 -25.61 -0.15 -2.21 16 18 C -0.12 -1.75 6.84 -25.03 -0.17 -1.92 16 19 C -0.12 -1.71 6.91 -24.70 -0.17 -1.88 16 20 C -0.15 -2.57 6.40 -25.07 -0.16 -2.73 16 21 N -0.56 -12.11 9.42 -13.87 -0.13 -12.24 16 22 C 0.36 6.59 12.28 -92.23 -1.13 5.46 16 23 N -0.63 -11.14 9.38 -14.72 -0.14 -11.28 16 24 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 25 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.14 2.25 6.01 -52.49 -0.32 1.94 16 28 H 0.04 1.18 7.60 -51.93 -0.39 0.79 16 29 H 0.04 0.90 6.74 -51.93 -0.35 0.55 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 1.26 5.51 -51.93 -0.29 0.98 16 32 H 0.07 1.30 6.84 -51.93 -0.36 0.94 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.12 2.44 4.90 -51.93 -0.25 2.18 16 40 H 0.19 2.76 8.06 -52.49 -0.42 2.33 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -29.66 323.91 -8.93 -38.59 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.70 Total: 2.45 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.95 Total: 3.17 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.05 Total: -60.33 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.19 Total: -4.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.66 -8.93 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.319 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds