Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35547 * 117.00110 * 2 1 4 4 C 1.38912 * 120.46909 * 179.97438 * 3 2 1 5 5 C 1.39245 * 118.29082 * 180.02562 * 4 3 2 6 6 N 1.38604 * 120.49844 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99862 * 191.52467 * 6 5 4 8 8 C 1.50706 * 109.46750 * 269.99542 * 7 6 5 9 9 H 1.07994 * 119.99901 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99886 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00161 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99906 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47264 * 90.00293 * 12 10 8 14 14 H 1.48503 * 109.47316 * 209.99895 * 12 10 8 15 15 H 1.48505 * 109.47334 * 330.00214 * 12 10 8 16 16 C 1.46498 * 120.00099 * 11.51748 * 6 5 4 17 17 C 1.53876 * 110.03182 * 237.50506 * 16 6 5 18 18 C 1.54268 * 106.63799 * 240.69050 * 17 16 6 19 19 C 1.54966 * 104.16392 * 336.44842 * 18 17 16 20 20 C 1.54275 * 110.03137 * 120.34016 * 16 6 5 21 21 N 1.33151 * 118.99897 * 0.27291 * 5 4 3 22 22 C 1.31722 * 120.83965 * 359.44370 * 21 5 4 23 23 N 1.31780 * 121.88713 * 0.57514 * 22 21 5 24 24 H 1.08998 * 109.47310 * 300.00294 * 1 2 3 25 25 H 1.08998 * 109.47011 * 60.00770 * 1 2 3 26 26 H 1.09004 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.85756 * 0.04078 * 4 3 2 28 28 H 1.09001 * 109.47405 * 29.99566 * 7 6 5 29 29 H 1.08994 * 109.47662 * 149.99696 * 7 6 5 30 30 H 0.96994 * 120.00240 * 180.02562 * 11 10 8 31 31 H 1.08992 * 110.01844 * 358.90153 * 16 6 5 32 32 H 1.08997 * 110.03335 * 0.02562 * 17 16 6 33 33 H 1.09003 * 110.03098 * 121.38695 * 17 16 6 34 34 H 1.09001 * 110.48484 * 95.09458 * 18 17 16 35 35 H 1.09004 * 110.48745 * 217.73532 * 18 17 16 36 36 H 1.09001 * 110.71773 * 279.57310 * 19 18 17 37 37 H 1.08999 * 110.76243 * 156.22020 * 19 18 17 38 38 H 1.08999 * 110.48337 * 261.57798 * 20 16 6 39 39 H 1.08997 * 110.48236 * 24.08240 * 20 16 6 40 40 H 1.07996 * 119.05674 * 180.26559 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4309 1.2917 0.0005 5 6 4.0155 2.5556 0.0011 6 7 5.3948 2.6926 0.0011 7 6 6.0007 4.0020 0.2551 8 6 6.1804 4.7340 -1.0500 9 1 5.8736 4.2704 -1.9758 10 6 6.7357 5.9960 -1.0618 11 7 7.1089 6.5608 0.0658 12 14 6.9578 6.9035 -2.6793 13 1 5.7421 7.7062 -2.9675 14 1 8.1345 7.8044 -2.5839 15 1 7.1733 5.9216 -3.7723 16 6 6.2466 1.5281 -0.2528 17 6 7.2089 1.3115 0.9283 18 6 8.6384 1.4352 0.3617 19 6 8.4784 1.1114 -1.1453 20 6 7.1246 1.7768 -1.4967 21 7 3.2295 3.6303 0.0066 22 6 1.9180 3.5078 0.0005 23 7 1.3290 2.3290 0.0000 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0400 0.3998 0.0003 28 1 5.3511 4.5821 0.9105 29 1 6.9712 3.8669 0.7325 30 1 7.4991 7.4488 0.0575 31 1 5.6312 0.6408 -0.4006 32 1 7.0418 2.0725 1.6905 33 1 7.0604 0.3189 1.3536 34 1 9.0155 2.4490 0.4959 35 1 9.3018 0.7141 0.8393 36 1 8.4325 0.0342 -1.3055 37 1 9.2886 1.5550 -1.7239 38 1 6.6841 1.3049 -2.3750 39 1 7.2548 2.8459 -1.6642 40 1 1.3080 4.3990 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = -2.361668 kcal Electronic energy + Delta-G solvation = -22099.572772 eV Core-core repulsion = 18914.144772 eV Total energy + Delta-G solvation = -3185.428000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.98767 -40.04372 -39.06545 -36.30794 -34.77221 -33.13652 -32.17429 -29.76440 -29.52991 -28.48615 -27.53562 -25.24430 -24.75460 -23.04754 -21.48557 -20.66556 -19.37766 -18.76668 -18.44698 -17.48775 -17.04081 -16.62672 -16.50157 -16.05736 -15.78903 -15.49946 -15.29551 -14.81933 -14.51261 -14.34769 -13.90249 -13.42367 -13.25511 -12.83992 -12.75150 -12.64357 -12.52899 -12.45317 -12.18431 -11.93636 -11.83169 -11.77292 -11.59275 -11.34209 -11.27595 -11.06394 -10.53894 -10.12467 -10.10479 -8.73824 -8.08643 -6.21791 0.25346 0.55456 1.38810 1.40891 1.49376 1.87907 2.31450 2.45100 3.04455 3.16958 3.32694 3.58684 3.79287 3.81068 4.02373 4.11751 4.35969 4.47709 4.48105 4.57216 4.60766 4.65214 4.69397 4.70344 4.77797 4.88970 4.97543 5.01577 5.12364 5.16925 5.26068 5.34049 5.41178 5.47617 5.67421 5.74442 5.92196 6.16109 6.22209 6.45301 6.67457 6.86197 7.42427 7.50439 8.93694 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.006472 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.991000 B = 4325.421418 C = 5624.022485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C 0.375 3.625 4 C -0.333 4.333 5 C 0.450 3.550 6 N -0.574 5.574 7 C 0.279 3.721 8 C -0.509 4.509 9 H 0.047 0.953 10 C 0.014 3.986 11 N -0.927 5.927 12 Si 0.952 3.048 13 H -0.281 1.281 14 H -0.281 1.281 15 H -0.269 1.269 16 C 0.141 3.859 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.152 4.152 21 N -0.608 5.608 22 C 0.362 3.638 23 N -0.627 5.627 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.005 0.995 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -14.306 -0.278 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.218 6.218 3 C 0.192 3.808 4 C -0.362 4.362 5 C 0.208 3.792 6 N -0.281 5.281 7 C 0.158 3.842 8 C -0.548 4.548 9 H 0.065 0.935 10 C -0.184 4.184 11 N -0.568 5.568 12 Si 0.778 3.222 13 H -0.207 1.207 14 H -0.206 1.206 15 H -0.194 1.194 16 C 0.038 3.962 17 C -0.168 4.168 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.190 4.190 21 N -0.335 5.335 22 C 0.072 3.928 23 N -0.363 5.363 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.174 0.826 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.303 -13.684 -0.188 14.677 hybrid contribution 0.317 0.641 -0.657 0.971 sum -4.985 -13.044 -0.844 13.989 Atomic orbital electron populations 1.23119 0.75379 1.04824 1.02469 1.86181 1.24769 1.23644 1.87167 1.19739 0.88876 0.85284 0.86925 1.21018 0.93346 0.98285 1.23584 1.18578 0.86401 0.88411 0.85847 1.47218 1.00377 1.10847 1.69680 1.18670 0.91873 0.78266 0.95376 1.21492 1.39068 1.00818 0.93380 0.93458 1.25614 0.95607 0.97998 0.99197 1.70028 1.43304 1.16055 1.27389 0.85652 0.77513 0.78624 0.80417 1.20693 1.20606 1.19388 1.22027 0.91546 0.87059 0.95547 1.22503 0.95093 1.02268 0.96950 1.22298 0.95973 1.01051 0.96206 1.22399 0.95809 1.00936 0.95596 1.22994 0.96259 1.03050 0.96708 1.68227 1.07063 1.33396 1.24857 1.24880 0.87205 0.94544 0.86147 1.68116 1.41090 0.98916 1.28196 0.92351 0.92442 0.85426 0.82573 0.97649 0.96094 0.92772 0.87992 0.93390 0.88786 0.93929 0.89266 0.89215 0.91611 0.91730 0.90853 0.76554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.41 113.37 1.18 1.91 16 2 O -0.31 -8.80 10.49 -88.52 -0.93 -9.73 16 3 C 0.37 12.61 7.52 84.68 0.64 13.25 16 4 C -0.33 -11.79 9.30 22.67 0.21 -11.58 16 5 C 0.45 18.81 7.33 133.00 0.97 19.78 16 6 N -0.57 -24.43 2.49 -679.81 -1.69 -26.12 16 7 C 0.28 14.37 4.47 85.63 0.38 14.75 16 8 C -0.51 -27.93 7.40 25.60 0.19 -27.74 16 9 H 0.05 2.65 7.29 -2.91 -0.02 2.63 16 10 C 0.01 0.81 5.46 84.66 0.46 1.27 16 11 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 12 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 C 0.14 4.77 3.23 45.72 0.15 4.92 16 17 C -0.13 -3.88 5.97 31.32 0.19 -3.70 16 18 C -0.12 -3.28 6.84 31.70 0.22 -3.06 16 19 C -0.11 -2.91 6.91 31.91 0.22 -2.69 16 20 C -0.15 -5.15 6.40 31.67 0.20 -4.95 16 21 N -0.61 -26.62 9.42 -197.79 -1.86 -28.48 16 22 C 0.36 12.98 12.28 180.91 2.22 15.20 16 23 N -0.63 -21.22 9.38 -313.05 -2.94 -24.16 16 24 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 25 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 26 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.16 4.77 6.01 -2.91 -0.02 4.76 16 28 H 0.01 0.32 7.60 -2.39 -0.02 0.30 16 29 H 0.02 1.13 6.74 -2.39 -0.02 1.12 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.10 2.97 5.51 -2.39 -0.01 2.96 16 32 H 0.05 1.70 6.84 -2.39 -0.02 1.68 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 3.17 4.90 -2.39 -0.01 3.16 16 40 H 0.22 6.16 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -66.27 323.91 3.16 -63.11 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.04 Total: 15.76 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 7.23 Total: 17.35 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -6.20 Total: -132.95 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.93 Total: -9.73 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.27 3.16 -63.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.749 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds