Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35751 * 116.99862 * 2 1 4 4 N 1.32264 * 120.11574 * 0.02562 * 3 2 1 5 5 C 1.32424 * 120.01626 * 179.97438 * 4 3 2 6 6 C 1.37947 * 120.25936 * 359.97438 * 5 4 3 7 7 N 1.32401 * 120.23684 * 0.04941 * 6 5 4 8 8 C 1.32464 * 119.97104 * 359.97071 * 7 6 5 9 9 N 1.39184 * 120.12355 * 179.97438 * 8 7 6 10 10 C 1.46893 * 111.00196 * 123.95178 * 9 8 7 11 11 C 1.50700 * 109.47221 * 169.99537 * 10 9 8 12 12 H 1.08000 * 120.00023 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00283 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99760 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00307 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46917 * 60.00384 * 15 13 11 17 17 H 1.48506 * 109.47346 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47168 * 300.00176 * 15 13 11 19 19 C 1.46902 * 111.00094 * 359.97438 * 9 8 7 20 20 C 1.54272 * 110.02977 * 56.12302 * 19 9 8 21 21 C 1.54892 * 104.19526 * 217.10431 * 20 19 9 22 22 C 1.54892 * 102.74808 * 37.94378 * 21 20 19 23 23 C 1.53879 * 110.03445 * 298.95993 * 19 9 8 24 24 H 1.09009 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47064 * 299.99835 * 1 2 3 26 26 H 1.09001 * 109.47714 * 60.00195 * 1 2 3 27 27 H 1.08001 * 119.86986 * 180.02562 * 5 4 3 28 28 H 1.07994 * 119.88390 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47342 * 289.99969 * 10 9 8 30 30 H 1.09002 * 109.46730 * 50.00156 * 10 9 8 31 31 H 0.97003 * 119.99854 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.02071 * 177.56252 * 19 9 8 33 33 H 1.08994 * 110.48947 * 335.78307 * 20 19 9 34 34 H 1.09003 * 110.48358 * 98.42944 * 20 19 9 35 35 H 1.09004 * 110.75806 * 279.63142 * 21 20 19 36 36 H 1.08996 * 110.75706 * 156.25454 * 21 20 19 37 37 H 1.08999 * 110.48476 * 203.38095 * 22 21 20 38 38 H 1.09002 * 110.59944 * 80.78957 * 22 21 20 39 39 H 1.08995 * 110.03007 * 238.56877 * 23 19 9 40 40 H 1.09005 * 110.02811 * 359.94527 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3271 2.3203 0.0005 5 6 1.9303 3.4991 0.0010 6 6 3.3077 3.5752 0.0016 7 7 4.0365 2.4698 0.0006 8 6 3.4427 1.2857 -0.0003 9 7 4.2058 0.1217 -0.0019 10 6 3.8544 -0.7396 1.1349 11 6 4.5131 -2.0848 0.9684 12 1 5.1313 -2.2802 0.1047 13 6 4.3275 -3.0658 1.9193 14 7 3.5750 -2.8278 2.9714 15 14 5.1445 -4.7329 1.7133 16 1 6.6183 -4.5587 1.6607 17 1 4.7892 -5.6038 2.8625 18 1 4.6750 -5.3619 0.4525 19 6 5.6414 0.4333 -0.0029 20 6 5.9875 1.3339 1.2008 21 6 7.0605 2.3065 0.6514 22 6 6.5625 2.5871 -0.7882 23 6 6.0070 1.2301 -1.2675 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.3416 4.4046 0.0019 28 1 3.7933 4.5398 0.0024 29 1 4.1990 -0.2784 2.0604 30 1 2.7726 -0.8672 1.1733 31 1 3.4441 -3.5181 3.6402 32 1 6.2231 -0.4875 0.0394 33 1 5.1067 1.8846 1.5310 34 1 6.3948 0.7386 2.0180 35 1 8.0411 1.8307 0.6351 36 1 7.0854 3.2252 1.2374 37 1 7.3894 2.9063 -1.4225 38 1 5.7750 3.3407 -0.7815 39 1 6.7667 0.6964 -1.8385 40 1 5.1193 1.3848 -1.8810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = 21.278504 kcal Electronic energy + Delta-G solvation = -22977.014616 eV Core-core repulsion = 19792.611731 eV Total energy + Delta-G solvation = -3184.402885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55911 -39.97247 -39.05646 -36.34860 -34.88666 -34.17334 -31.23540 -29.72094 -29.21502 -28.25249 -27.70585 -24.90626 -24.54297 -23.53282 -21.48630 -20.71201 -19.28574 -19.04955 -18.40434 -17.51811 -17.11992 -16.63905 -16.35288 -15.91735 -15.68943 -15.51606 -15.24450 -14.53936 -14.43738 -14.36153 -13.97157 -13.55902 -13.08107 -12.90614 -12.72889 -12.65243 -12.41959 -12.29468 -12.23314 -11.94283 -11.81355 -11.75032 -11.58398 -11.46718 -11.34084 -11.07992 -10.62647 -10.19286 -9.95237 -8.62195 -8.21967 -6.31135 0.04475 0.25624 1.39742 1.43092 1.50775 2.11346 2.37769 2.71374 2.98671 3.11992 3.28508 3.56972 3.72617 3.92031 3.96639 4.23940 4.33638 4.40605 4.45493 4.49167 4.65465 4.68712 4.73228 4.78407 4.81908 4.96305 5.02912 5.08582 5.22791 5.26406 5.33129 5.40068 5.41353 5.50708 5.63871 5.76226 5.94265 6.06086 6.19611 6.40443 6.65385 6.79403 6.97388 7.36273 8.89411 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.008035 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.830605 B = 3483.708701 C = 4884.169293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.309 6.309 3 C 0.231 3.769 4 N -0.494 5.494 5 C 0.045 3.955 6 C 0.027 3.973 7 N -0.433 5.433 8 C 0.243 3.757 9 N -0.466 5.466 10 C 0.214 3.786 11 C -0.524 4.524 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.091 3.909 20 C -0.131 4.131 21 C -0.100 4.100 22 C -0.097 4.097 23 C -0.096 4.096 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.209 0.791 28 H 0.212 0.788 29 H -0.031 1.031 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 14.232 -6.503 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.215 6.215 3 C 0.045 3.955 4 N -0.224 5.224 5 C -0.113 4.113 6 C -0.132 4.132 7 N -0.155 5.155 8 C 0.007 3.993 9 N -0.182 5.182 10 C 0.090 3.910 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.190 4.190 14 N -0.569 5.569 15 Si 0.792 3.208 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.017 4.017 20 C -0.170 4.170 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.134 4.134 24 H 0.124 0.876 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.226 0.774 28 H 0.229 0.771 29 H -0.013 1.013 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.122 13.495 -6.773 15.100 hybrid contribution -0.181 -0.929 0.936 1.332 sum -0.059 12.566 -5.837 13.856 Atomic orbital electron populations 1.22987 0.76870 1.03899 1.02041 1.86565 1.23630 1.23820 1.87454 1.20548 0.89635 0.86296 0.99011 1.68022 1.39862 0.98811 1.15676 1.23917 0.94528 0.95085 0.97758 1.24190 0.92591 0.98386 0.98073 1.69109 1.37413 0.96938 1.12020 1.20360 0.88606 0.91115 0.99244 1.59397 1.05977 1.10707 1.42148 1.19560 0.97243 0.90495 0.83707 1.21280 1.30205 0.97567 1.07133 0.92148 1.25821 0.95881 1.02741 0.94591 1.70085 1.39677 1.35549 1.11627 0.85464 0.79015 0.78535 0.77786 1.19215 1.20625 1.19419 1.22313 0.85473 0.97642 0.96254 1.22801 0.99841 0.97564 0.96841 1.22243 0.96583 0.98122 0.96801 1.22247 0.99919 0.96296 0.94971 1.22004 0.99466 0.96740 0.95201 0.87610 0.92757 0.91576 0.77396 0.77114 1.01300 0.94541 0.92644 0.91407 0.91972 0.95327 0.91757 0.90725 0.91138 0.89761 0.91977 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 10.40 113.37 1.18 2.39 16 2 O -0.31 -13.57 7.78 -90.77 -0.71 -14.27 16 3 C 0.23 9.44 7.20 85.04 0.61 10.05 16 4 N -0.49 -16.48 9.40 -307.76 -2.89 -19.37 16 5 C 0.05 1.10 11.20 84.53 0.95 2.04 16 6 C 0.03 0.64 10.78 84.54 0.91 1.55 16 7 N -0.43 -14.28 3.12 -192.19 -0.60 -14.88 16 8 C 0.24 10.08 4.98 133.18 0.66 10.74 16 9 N -0.47 -21.92 4.44 -677.15 -3.00 -24.92 16 10 C 0.21 11.87 4.31 85.56 0.37 12.24 16 11 C -0.52 -30.43 8.43 25.60 0.22 -30.21 16 12 H 0.06 3.46 7.16 -2.91 -0.02 3.44 16 13 C 0.01 0.48 5.46 84.65 0.46 0.94 16 14 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 15 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 C 0.09 3.75 2.81 45.64 0.13 3.88 16 20 C -0.13 -5.02 4.74 31.67 0.15 -4.87 16 21 C -0.10 -2.79 6.90 31.89 0.22 -2.57 16 22 C -0.10 -2.52 6.17 31.67 0.20 -2.33 16 23 C -0.10 -3.19 5.72 31.32 0.18 -3.01 16 24 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 25 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 26 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 27 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 29 H -0.03 -1.86 7.21 -2.39 -0.02 -1.88 16 30 H 0.04 2.20 5.34 -2.39 -0.01 2.19 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.07 3.11 6.76 -2.39 -0.02 3.10 16 33 H 0.06 2.52 5.42 -2.39 -0.01 2.50 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.09 5.95 -2.39 -0.01 2.08 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.64 6.99 -2.38 -0.02 1.62 16 Total: -1.00 -71.00 312.30 2.38 -68.62 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.04 Total: 13.20 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.23 Total: 0.86 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -6.21 Total: -115.36 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.71 Total: -14.27 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.00 2.38 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.900 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds