Wall clock time and date at job start Mon Mar 30 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35795 * 116.99877 * 2 1 4 4 C 1.39394 * 120.05160 * 179.97438 * 3 2 1 5 5 C 1.38421 * 117.97949 * 179.75206 * 4 3 2 6 6 C 1.39549 * 117.94238 * 0.51901 * 5 4 3 7 7 N 1.39299 * 120.09271 * 179.73969 * 6 5 4 8 8 C 1.46504 * 120.00010 * 190.55259 * 7 6 5 9 9 C 1.50694 * 109.47357 * 270.00100 * 8 7 6 10 10 H 1.08003 * 120.00244 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00242 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00270 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 120.00015 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.46987 * 89.99344 * 13 11 9 15 15 H 1.48493 * 109.47072 * 209.99843 * 13 11 9 16 16 H 1.48498 * 109.46702 * 329.99776 * 13 11 9 17 17 C 1.46501 * 120.00335 * 10.55693 * 7 6 5 18 18 C 1.54884 * 110.75972 * 125.72726 * 17 7 6 19 19 C 1.54267 * 104.31176 * 156.32397 * 18 17 7 20 20 C 1.53872 * 106.60064 * 336.32548 * 19 18 17 21 21 C 1.54265 * 106.59859 * 0.02562 * 20 19 18 22 22 N 1.32314 * 119.81301 * 359.46853 * 6 5 4 23 23 N 1.28341 * 122.15760 * 0.27757 * 22 6 5 24 24 H 1.08998 * 109.47063 * 60.00128 * 1 2 3 25 25 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47084 * 300.00343 * 1 2 3 27 27 H 1.07998 * 121.01245 * 359.97438 * 4 3 2 28 28 H 1.07991 * 121.02904 * 180.26453 * 5 4 3 29 29 H 1.09004 * 109.46950 * 30.00595 * 8 7 6 30 30 H 1.08998 * 109.46878 * 150.00114 * 8 7 6 31 31 H 0.97002 * 119.99924 * 179.97438 * 12 11 9 32 32 H 1.09002 * 110.81254 * 2.39810 * 17 7 6 33 33 H 1.09001 * 110.48446 * 37.58462 * 18 17 7 34 34 H 1.08994 * 110.49320 * 275.07006 * 18 17 7 35 35 H 1.08995 * 110.02990 * 95.61146 * 19 18 17 36 36 H 1.09006 * 110.03388 * 216.99247 * 19 18 17 37 37 H 1.09001 * 110.03251 * 119.28106 * 20 19 18 38 38 H 1.09001 * 110.03671 * 240.71324 * 20 19 18 39 39 H 1.08994 * 110.49195 * 142.28606 * 21 20 19 40 40 H 1.09006 * 110.48625 * 264.79702 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4375 1.2842 0.0005 5 6 4.0208 2.5394 -0.0048 6 6 3.1785 3.6520 0.0008 7 7 3.7178 4.9364 0.0013 8 6 2.8523 6.0942 0.2395 9 6 2.3101 6.5948 -1.0744 10 1 2.5825 6.0998 -1.9949 11 6 1.4653 7.6841 -1.1015 12 7 0.9925 8.1213 -2.2482 13 14 0.9935 8.5400 0.4905 14 1 1.9716 9.6188 0.7812 15 1 -0.3640 9.1261 0.3539 16 1 0.9979 7.5552 1.6020 17 6 5.1505 5.1294 -0.2364 18 6 5.3847 6.1236 -1.4008 19 6 6.7988 6.6844 -1.1448 20 6 7.0748 6.5113 0.3591 21 6 5.8190 5.8507 0.9644 22 7 1.8661 3.4835 0.0003 23 7 1.3270 2.3189 -0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0424 0.3895 0.0014 28 1 5.0946 2.6542 -0.0089 29 1 2.0251 5.8024 0.8865 30 1 3.4279 6.8853 0.7200 31 1 0.3979 8.8875 -2.2671 32 1 5.6416 4.1772 -0.4369 33 1 4.6459 6.9245 -1.3729 34 1 5.3477 5.6049 -2.3587 35 1 7.5327 6.1259 -1.7258 36 1 6.8360 7.7403 -1.4128 37 1 7.9426 5.8687 0.5079 38 1 7.2457 7.4833 0.8217 39 1 6.0995 5.1313 1.7336 40 1 5.1510 6.6072 1.3763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:45 Heat of formation + Delta-G solvation = 9.576067 kcal Electronic energy + Delta-G solvation = -21999.598997 eV Core-core repulsion = 18814.688656 eV Total energy + Delta-G solvation = -3184.910341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04490 -39.97540 -38.94266 -36.29119 -34.73556 -33.88469 -31.72346 -30.13901 -29.48013 -28.51250 -27.60599 -25.51759 -24.30966 -23.31409 -21.06119 -20.71338 -19.40429 -18.91310 -18.67887 -18.42547 -17.12371 -16.62657 -16.27411 -15.97405 -15.51823 -15.33148 -15.17022 -14.73509 -14.45159 -14.20632 -14.11738 -13.56072 -13.38374 -13.14475 -12.81493 -12.66633 -12.40161 -12.38374 -12.27119 -11.98440 -11.94534 -11.85463 -11.65730 -11.34952 -11.21793 -11.14198 -10.72486 -10.48478 -10.24926 -8.38605 -8.24968 -6.25294 -0.03406 0.40283 1.31546 1.36396 1.46031 1.96093 2.27196 2.35102 2.75812 3.08785 3.44688 3.67072 3.79343 3.82085 3.86136 3.99965 4.17737 4.36897 4.42641 4.46782 4.55792 4.62179 4.65040 4.73244 4.77291 4.80174 4.85501 4.94282 4.97655 5.07096 5.14452 5.18173 5.30954 5.39872 5.50429 5.58160 5.65280 6.08130 6.15532 6.49661 6.57060 6.74809 7.35109 8.04349 8.91678 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.006995 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.265630 B = 4002.149303 C = 5592.188283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C 0.182 3.818 4 C -0.082 4.082 5 C -0.143 4.143 6 C 0.310 3.690 7 N -0.579 5.579 8 C 0.242 3.758 9 C -0.502 4.502 10 H 0.028 0.972 11 C 0.010 3.990 12 N -0.949 5.949 13 Si 0.936 3.064 14 H -0.257 1.257 15 H -0.287 1.287 16 H -0.255 1.255 17 C 0.145 3.855 18 C -0.144 4.144 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.134 4.134 22 N -0.312 5.312 23 N -0.299 5.299 24 H 0.044 0.956 25 H 0.133 0.867 26 H 0.050 0.950 27 H 0.195 0.805 28 H 0.191 0.809 29 H 0.019 0.981 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.711 -12.266 7.874 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.217 6.217 3 C -0.009 4.009 4 C -0.111 4.111 5 C -0.176 4.176 6 C 0.067 3.933 7 N -0.292 5.292 8 C 0.119 3.881 9 C -0.541 4.541 10 H 0.046 0.954 11 C -0.187 4.187 12 N -0.591 5.591 13 Si 0.760 3.240 14 H -0.181 1.181 15 H -0.212 1.212 16 H -0.179 1.179 17 C 0.042 3.958 18 C -0.182 4.182 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.173 4.173 22 N -0.164 5.164 23 N -0.151 5.151 24 H 0.063 0.937 25 H 0.151 0.849 26 H 0.068 0.932 27 H 0.212 0.788 28 H 0.208 0.792 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.246 -11.581 7.811 17.934 hybrid contribution -0.137 0.404 -0.145 0.451 sum 11.109 -11.177 7.666 17.525 Atomic orbital electron populations 1.23036 0.76491 1.04764 1.01624 1.86155 1.23611 1.22747 1.89172 1.21614 0.92197 0.86881 1.00239 1.21696 0.91256 1.00014 0.98126 1.22163 1.02777 0.89658 1.02964 1.20387 0.91147 0.88233 0.93562 1.46556 1.07791 1.01446 1.73365 1.19177 0.89527 0.84480 0.94905 1.21450 1.27259 1.12272 0.93141 0.95384 1.25722 0.95630 0.97998 0.99318 1.70058 1.34801 1.26827 1.27404 0.85882 0.78159 0.79439 0.80543 1.18135 1.21248 1.17907 1.22374 0.78102 0.99824 0.95492 1.22801 0.98348 0.99612 0.97486 1.22052 0.95053 1.00878 0.97402 1.22029 0.97269 1.01295 0.94263 1.22801 0.97166 0.99973 0.97315 1.72868 1.10861 1.13339 1.19301 1.72675 1.33038 0.94527 1.14905 0.93705 0.84926 0.93166 0.78796 0.79241 0.96341 0.94257 0.92743 0.86536 0.92258 0.93482 0.90032 0.92479 0.89015 0.91376 0.89362 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.40 113.37 1.18 2.05 16 2 O -0.31 -8.97 10.49 -91.26 -0.96 -9.93 16 3 C 0.18 6.10 7.57 84.93 0.64 6.74 16 4 C -0.08 -2.13 10.15 22.59 0.23 -1.90 16 5 C -0.14 -3.98 9.35 22.63 0.21 -3.76 16 6 C 0.31 12.26 7.40 133.09 0.99 13.25 16 7 N -0.58 -23.13 2.63 -675.78 -1.78 -24.91 16 8 C 0.24 11.62 3.52 85.63 0.30 11.93 16 9 C -0.50 -29.12 7.95 25.60 0.20 -28.92 16 10 H 0.03 1.84 8.00 -2.91 -0.02 1.82 16 11 C 0.01 0.61 5.47 84.65 0.46 1.07 16 12 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 13 Si 0.94 45.18 27.47 68.60 1.88 47.07 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 16 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 17 C 0.15 4.37 3.21 46.39 0.15 4.52 16 18 C -0.14 -4.87 6.07 31.67 0.19 -4.68 16 19 C -0.12 -2.81 6.80 31.32 0.21 -2.60 16 20 C -0.11 -2.22 6.80 31.32 0.21 -2.00 16 21 C -0.13 -3.32 6.39 31.78 0.20 -3.12 16 22 N -0.31 -14.65 10.44 -54.99 -0.57 -15.22 16 23 N -0.30 -12.59 10.39 -170.24 -1.77 -14.35 16 24 H 0.04 1.21 8.11 -2.39 -0.02 1.19 16 25 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 27 H 0.19 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.19 3.51 6.04 -2.92 -0.02 3.49 16 29 H 0.02 0.97 6.64 -2.39 -0.02 0.95 16 30 H 0.04 1.79 5.75 -2.39 -0.01 1.77 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.12 2.67 5.60 -2.39 -0.01 2.66 16 33 H 0.06 2.61 5.75 -2.39 -0.01 2.59 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.57 6.32 -2.38 -0.02 1.55 16 Total: -1.00 -77.15 320.92 3.28 -73.88 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.98 Total: 11.42 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.19 Total: -7.43 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -3.82 Total: -115.01 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.96 Total: -9.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -77.15 3.28 -73.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.455 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds