Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 113.99893 * 2 1 4 4 C 1.50696 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.38815 * 119.99153 * 0.02562 * 4 3 2 6 6 C 1.38563 * 118.04393 * 179.74952 * 5 4 3 7 7 C 1.39489 * 117.89977 * 0.48537 * 6 5 4 8 8 N 1.39043 * 120.15730 * 179.75949 * 7 6 5 9 9 C 1.46840 * 111.00134 * 55.76670 * 8 7 6 10 10 C 1.53041 * 109.52567 * 185.83927 * 9 8 7 11 11 C 1.53123 * 109.27536 * 300.82469 * 10 9 8 12 12 C 1.53116 * 109.16135 * 57.65584 * 11 10 9 13 13 H 1.08997 * 109.50517 * 62.28561 * 12 11 10 14 14 C 1.50703 * 109.50267 * 182.40432 * 12 11 10 15 15 H 1.07991 * 120.00337 * 35.05934 * 14 12 11 16 16 C 1.37882 * 119.99561 * 215.05903 * 14 12 11 17 17 N 1.31518 * 119.99626 * 186.12838 * 16 14 12 18 18 Si 1.86795 * 120.00144 * 6.13104 * 16 14 12 19 19 H 1.48502 * 109.47333 * 84.77893 * 18 16 14 20 20 H 1.48500 * 109.47016 * 204.77543 * 18 16 14 21 21 H 1.48502 * 109.47325 * 324.77351 * 18 16 14 22 22 C 1.46850 * 111.00074 * 179.97438 * 8 7 6 23 23 N 1.32483 * 119.68129 * 359.48677 * 7 6 5 24 24 N 1.28351 * 122.07773 * 0.27026 * 23 7 6 25 25 H 1.08996 * 109.47071 * 60.00287 * 1 2 3 26 26 H 1.09008 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47156 * 299.99395 * 1 2 3 28 28 H 1.08997 * 109.47494 * 59.99608 * 3 2 1 29 29 H 1.09011 * 109.46959 * 299.99948 * 3 2 1 30 30 H 1.08005 * 120.98037 * 0.02562 * 5 4 3 31 31 H 1.07998 * 121.05749 * 180.24766 * 6 5 4 32 32 H 1.09003 * 109.45930 * 65.82475 * 9 8 7 33 33 H 1.08997 * 109.45714 * 305.85386 * 9 8 7 34 34 H 1.09002 * 109.50563 * 180.88394 * 10 9 8 35 35 H 1.08992 * 109.53305 * 60.78057 * 10 9 8 36 36 H 1.09003 * 109.51661 * 177.55801 * 11 10 9 37 37 H 1.08999 * 109.52697 * 297.74620 * 11 10 9 38 38 H 0.97003 * 119.99641 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.45658 * 294.17763 * 22 8 7 40 40 H 1.08996 * 109.46116 * 54.15311 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1093 -0.0668 -0.0016 6 6 5.4936 -0.1291 -0.0075 7 6 6.2011 1.0731 -0.0017 8 7 7.5915 1.0653 -0.0022 9 6 8.1130 0.2969 -1.1396 10 6 9.6354 0.1871 -1.0277 11 6 10.2439 1.5922 -1.0148 12 6 9.6481 2.3872 0.1503 13 1 9.9090 1.9039 1.0918 14 6 10.1976 3.7904 0.1350 15 1 10.4025 4.2799 -0.8056 16 6 10.4386 4.4493 1.3220 17 7 10.8028 5.7130 1.3103 18 14 10.2479 3.5471 2.9465 19 1 11.5026 2.8159 3.2570 20 1 9.9656 4.5265 4.0264 21 1 9.1238 2.5817 2.8476 22 6 8.1254 2.4332 0.0040 23 7 5.5419 2.2222 -0.0011 24 7 4.2593 2.2724 -0.0007 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.5124 -0.9669 -0.0024 31 1 6.0085 -1.0783 -0.0126 32 1 7.8527 0.8027 -2.0694 33 1 7.6756 -0.7014 -1.1345 34 1 10.0238 -0.3698 -1.8804 35 1 9.8966 -0.3310 -0.1051 36 1 11.3245 1.5199 -0.8916 37 1 10.0163 2.0964 -1.9540 38 1 10.9727 6.1764 2.1454 39 1 7.8650 2.9288 -0.9312 40 1 7.6971 2.9865 0.8398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = 19.094090 kcal Electronic energy + Delta-G solvation = -21489.541602 eV Core-core repulsion = 18305.043993 eV Total energy + Delta-G solvation = -3184.497609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09004 -38.71202 -37.95327 -34.36660 -33.20147 -32.51660 -30.95906 -30.37944 -27.82700 -25.98002 -25.43727 -24.53199 -23.19208 -22.09946 -21.22340 -18.97807 -17.54073 -17.27873 -16.77495 -16.31966 -16.30235 -16.04108 -15.01056 -14.61968 -14.35635 -14.07753 -13.93092 -13.50485 -13.19330 -12.89239 -12.82249 -12.70410 -12.37356 -12.31293 -11.78205 -11.22128 -11.04265 -10.89468 -10.76397 -10.49885 -10.37413 -10.19122 -9.84475 -9.82131 -9.63431 -9.41307 -9.20536 -9.06407 -8.48766 -7.96262 -6.06911 -4.07252 0.97958 1.08426 3.14122 3.33234 3.42103 3.48073 3.56010 3.87740 4.42322 4.45934 4.65506 4.80740 4.85841 4.96525 4.98027 5.08658 5.20004 5.20680 5.27825 5.28675 5.31505 5.32852 5.59829 5.73443 5.80982 5.96939 6.04883 6.14922 6.21742 6.36959 6.39502 6.67118 6.71122 6.74331 6.77755 7.13186 7.36171 7.41335 7.48872 7.79268 8.53298 8.95831 8.99526 9.56656 11.05938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.004408 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.269155 B = 6351.099226 C = 7020.023259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.126 3.874 4 C 0.021 3.979 5 C -0.078 4.078 6 C -0.143 4.143 7 C 0.264 3.736 8 N -0.474 5.474 9 C 0.065 3.935 10 C -0.120 4.120 11 C -0.109 4.109 12 C 0.018 3.982 13 H 0.040 0.960 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.896 5.896 18 Si 0.874 3.126 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.261 1.261 22 C 0.070 3.930 23 N -0.270 5.270 24 N -0.215 5.215 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.264 0.736 39 H 0.046 0.954 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.327 -15.140 -3.773 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.048 3.952 4 C -0.127 4.127 5 C -0.107 4.107 6 C -0.174 4.174 7 C 0.026 3.974 8 N -0.191 5.191 9 C -0.060 4.060 10 C -0.158 4.158 11 C -0.147 4.147 12 C -0.002 4.002 13 H 0.058 0.942 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.128 4.128 17 N -0.533 5.533 18 Si 0.701 3.299 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.185 1.185 22 C -0.055 4.055 23 N -0.118 5.118 24 N -0.058 5.058 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.818 -13.712 -3.244 21.183 hybrid contribution -0.589 -1.343 0.474 1.541 sum -16.406 -15.054 -2.770 22.438 Atomic orbital electron populations 1.22760 0.80126 1.03001 1.00371 1.87775 1.20259 1.27348 1.95618 1.20770 0.87519 0.84763 1.02121 1.22245 0.96829 0.91503 1.02077 1.22005 0.94257 0.99411 0.95003 1.22010 0.94293 0.99072 1.02065 1.21797 0.92387 0.91037 0.92186 1.59228 1.00245 1.19857 1.39766 1.22203 0.97065 0.96814 0.89947 1.21712 0.92805 0.99559 1.01714 1.21684 0.99980 0.92934 1.00100 1.19250 0.89495 0.96590 0.94858 0.94228 1.20906 1.42608 0.96968 0.94582 0.90809 1.25077 0.94155 0.94514 0.99015 1.69915 1.46619 1.09368 1.27435 0.86886 0.79338 0.79973 0.83657 1.20180 1.21646 1.18505 1.22779 0.98165 0.82694 1.01912 1.73421 1.00491 1.23451 1.14450 1.72645 0.99395 1.26447 1.07310 0.93740 0.89342 0.93722 0.90802 0.90838 0.82871 0.83356 0.93748 0.90990 0.91809 0.91399 0.92020 0.92924 0.92589 0.93547 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.81 9.22 -35.23 -0.32 -4.13 16 3 C 0.13 1.34 6.49 36.00 0.23 1.57 16 4 C 0.02 0.31 6.87 -82.40 -0.57 -0.26 16 5 C -0.08 -1.00 9.49 -39.25 -0.37 -1.37 16 6 C -0.14 -1.99 9.29 -39.00 -0.36 -2.35 16 7 C 0.26 4.74 6.48 -154.78 -1.00 3.73 16 8 N -0.47 -8.88 4.69 -173.08 -0.81 -9.69 16 9 C 0.07 1.00 5.25 -3.84 -0.02 0.98 16 10 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 11 C -0.11 -2.11 5.27 -26.61 -0.14 -2.25 16 12 C 0.02 0.41 1.95 -91.69 -0.18 0.23 16 13 H 0.04 0.95 5.24 -51.93 -0.27 0.68 16 14 C -0.51 -14.31 8.86 -34.44 -0.31 -14.61 16 15 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 18 Si 0.87 22.05 27.02 -169.99 -4.59 17.45 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.48 6.77 56.52 0.38 -6.10 16 22 C 0.07 1.56 3.93 -3.83 -0.02 1.55 16 23 N -0.27 -5.40 9.88 31.23 0.31 -5.09 16 24 N -0.21 -3.83 11.41 33.61 0.38 -3.44 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.15 1.57 7.09 -52.48 -0.37 1.19 16 31 H 0.15 1.64 7.21 -52.49 -0.38 1.26 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.88 6.73 -51.93 -0.35 0.53 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.05 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.08 1.96 7.73 -51.93 -0.40 1.55 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -32.54 323.52 -7.26 -39.80 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.00 Total: -1.59 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.88 Total: -11.39 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.65 Total: -45.02 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.32 Total: -4.13 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.59 Total: 17.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.54 -7.26 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.898 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds