Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 113.99893 * 2 1 4 4 C 1.50696 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.38815 * 119.99153 * 0.02562 * 4 3 2 6 6 C 1.38563 * 118.04393 * 179.74952 * 5 4 3 7 7 C 1.39489 * 117.89977 * 0.48537 * 6 5 4 8 8 N 1.39043 * 120.15730 * 179.75949 * 7 6 5 9 9 C 1.46840 * 111.00134 * 55.76670 * 8 7 6 10 10 C 1.53041 * 109.52567 * 185.83927 * 9 8 7 11 11 C 1.53123 * 109.27536 * 300.82469 * 10 9 8 12 12 C 1.53116 * 109.16135 * 57.65584 * 11 10 9 13 13 H 1.08997 * 109.50517 * 62.28561 * 12 11 10 14 14 C 1.50703 * 109.50267 * 182.40432 * 12 11 10 15 15 H 1.07991 * 120.00337 * 35.05934 * 14 12 11 16 16 C 1.37882 * 119.99561 * 215.05903 * 14 12 11 17 17 N 1.31518 * 119.99626 * 186.12838 * 16 14 12 18 18 Si 1.86795 * 120.00144 * 6.13104 * 16 14 12 19 19 H 1.48502 * 109.47333 * 84.77893 * 18 16 14 20 20 H 1.48500 * 109.47016 * 204.77543 * 18 16 14 21 21 H 1.48502 * 109.47325 * 324.77351 * 18 16 14 22 22 C 1.46850 * 111.00074 * 179.97438 * 8 7 6 23 23 N 1.32483 * 119.68129 * 359.48677 * 7 6 5 24 24 N 1.28351 * 122.07773 * 0.27026 * 23 7 6 25 25 H 1.08996 * 109.47071 * 60.00287 * 1 2 3 26 26 H 1.09008 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47156 * 299.99395 * 1 2 3 28 28 H 1.08997 * 109.47494 * 59.99608 * 3 2 1 29 29 H 1.09011 * 109.46959 * 299.99948 * 3 2 1 30 30 H 1.08005 * 120.98037 * 0.02562 * 5 4 3 31 31 H 1.07998 * 121.05749 * 180.24766 * 6 5 4 32 32 H 1.09003 * 109.45930 * 65.82475 * 9 8 7 33 33 H 1.08997 * 109.45714 * 305.85386 * 9 8 7 34 34 H 1.09002 * 109.50563 * 180.88394 * 10 9 8 35 35 H 1.08992 * 109.53305 * 60.78057 * 10 9 8 36 36 H 1.09003 * 109.51661 * 177.55801 * 11 10 9 37 37 H 1.08999 * 109.52697 * 297.74620 * 11 10 9 38 38 H 0.97003 * 119.99641 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.45658 * 294.17763 * 22 8 7 40 40 H 1.08996 * 109.46116 * 54.15311 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1093 -0.0668 -0.0016 6 6 5.4936 -0.1291 -0.0075 7 6 6.2011 1.0731 -0.0017 8 7 7.5915 1.0653 -0.0022 9 6 8.1130 0.2969 -1.1396 10 6 9.6354 0.1871 -1.0277 11 6 10.2439 1.5922 -1.0148 12 6 9.6481 2.3872 0.1503 13 1 9.9090 1.9039 1.0918 14 6 10.1976 3.7904 0.1350 15 1 10.4025 4.2799 -0.8056 16 6 10.4386 4.4493 1.3220 17 7 10.8028 5.7130 1.3103 18 14 10.2479 3.5471 2.9465 19 1 11.5026 2.8159 3.2570 20 1 9.9656 4.5265 4.0264 21 1 9.1238 2.5817 2.8476 22 6 8.1254 2.4332 0.0040 23 7 5.5419 2.2222 -0.0011 24 7 4.2593 2.2724 -0.0007 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.5124 -0.9669 -0.0024 31 1 6.0085 -1.0783 -0.0126 32 1 7.8527 0.8027 -2.0694 33 1 7.6756 -0.7014 -1.1345 34 1 10.0238 -0.3698 -1.8804 35 1 9.8966 -0.3310 -0.1051 36 1 11.3245 1.5199 -0.8916 37 1 10.0163 2.0964 -1.9540 38 1 10.9727 6.1764 2.1454 39 1 7.8650 2.9288 -0.9312 40 1 7.6971 2.9865 0.8398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = -3.974083 kcal Electronic energy + Delta-G solvation = -21490.541913 eV Core-core repulsion = 18305.043993 eV Total energy + Delta-G solvation = -3185.497920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.31865 -40.02836 -38.78704 -35.96122 -34.47259 -34.24130 -32.20050 -32.07706 -28.69325 -27.25344 -26.80638 -25.84147 -24.48145 -23.44178 -22.66503 -20.61158 -19.19477 -18.58471 -18.29487 -17.38260 -17.09332 -16.85664 -16.28305 -16.21541 -15.73888 -15.53636 -15.11181 -14.86762 -14.69501 -14.44670 -14.16579 -13.88977 -13.62655 -13.47761 -13.01318 -12.69180 -12.67004 -12.39541 -12.06421 -11.99282 -11.75851 -11.70189 -11.29567 -11.20485 -11.04696 -11.02714 -10.69462 -10.68803 -10.48251 -9.35112 -8.32717 -6.36592 -0.13674 -0.06978 1.30733 1.34804 1.45927 2.23439 2.32789 2.42672 2.61455 3.05590 3.45241 3.50568 3.72928 3.88375 3.99796 4.05595 4.08059 4.18994 4.36142 4.38018 4.45096 4.56775 4.59668 4.62710 4.67014 4.73836 4.79973 4.81053 4.92334 4.97351 5.02235 5.09040 5.17983 5.25868 5.56795 5.60539 5.67109 5.83509 6.01940 6.10460 6.31758 6.72449 7.30474 7.74625 8.84216 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.004408 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.269155 B = 6351.099226 C = 7020.023259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.131 3.869 4 C 0.026 3.974 5 C -0.068 4.068 6 C -0.128 4.128 7 C 0.241 3.759 8 N -0.477 5.477 9 C 0.060 3.940 10 C -0.110 4.110 11 C -0.108 4.108 12 C 0.017 3.983 13 H 0.038 0.962 14 C -0.516 4.516 15 H 0.033 0.967 16 C 0.016 3.984 17 N -0.946 5.946 18 Si 0.940 3.060 19 H -0.257 1.257 20 H -0.291 1.291 21 H -0.256 1.256 22 C 0.092 3.908 23 N -0.324 5.324 24 N -0.254 5.254 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.188 0.812 31 H 0.187 0.813 32 H 0.037 0.963 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.266 0.734 39 H 0.022 0.978 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 -19.508 -3.533 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.052 3.948 4 C -0.123 4.123 5 C -0.096 4.096 6 C -0.159 4.159 7 C 0.001 3.999 8 N -0.195 5.195 9 C -0.064 4.064 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.003 4.003 13 H 0.056 0.944 14 C -0.554 4.554 15 H 0.051 0.949 16 C -0.181 4.181 17 N -0.586 5.586 18 Si 0.764 3.236 19 H -0.181 1.181 20 H -0.217 1.217 21 H -0.180 1.180 22 C -0.035 4.035 23 N -0.170 5.170 24 N -0.095 5.095 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.205 0.795 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.644 -18.092 -3.021 25.451 hybrid contribution -0.209 0.000 0.283 0.352 sum -17.853 -18.092 -2.738 25.564 Atomic orbital electron populations 1.22993 0.78223 1.04436 1.01228 1.87730 1.22202 1.26438 1.95771 1.20752 0.85339 0.85678 1.03003 1.22879 0.98513 0.91478 0.99461 1.22402 0.94105 0.99910 0.93221 1.22354 0.94631 0.98813 1.00081 1.21994 0.91985 0.92234 0.93653 1.59245 1.01202 1.17227 1.41778 1.22442 0.97172 0.98333 0.88485 1.21673 0.92552 0.96576 1.03911 1.21594 1.00045 0.95365 0.97602 1.19204 0.90233 0.94222 0.96625 0.94373 1.21229 1.41982 0.99271 0.92914 0.94910 1.25931 0.94147 0.95161 1.02897 1.70061 1.48897 1.11193 1.28442 0.85836 0.80040 0.78779 0.78908 1.18127 1.21723 1.18013 1.22122 0.97150 0.85111 0.99140 1.73268 1.01854 1.25533 1.16343 1.72548 0.98940 1.28450 1.09599 0.92826 0.87648 0.92972 0.90016 0.89780 0.79463 0.79572 0.94450 0.86506 0.87945 0.90533 0.92091 0.93927 0.92504 0.95929 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -6.44 9.22 -148.98 -1.37 -7.82 16 3 C 0.13 2.46 6.49 71.23 0.46 2.92 16 4 C 0.03 0.69 6.87 42.70 0.29 0.99 16 5 C -0.07 -1.49 9.49 22.49 0.21 -1.28 16 6 C -0.13 -3.10 9.29 22.65 0.21 -2.89 16 7 C 0.24 8.36 6.48 133.11 0.86 9.22 16 8 N -0.48 -17.30 4.69 -701.51 -3.29 -20.59 16 9 C 0.06 1.66 5.25 86.33 0.45 2.11 16 10 C -0.11 -2.99 6.09 30.65 0.19 -2.80 16 11 C -0.11 -4.14 5.27 30.67 0.16 -3.98 16 12 C 0.02 0.79 1.95 -11.49 -0.02 0.76 16 13 H 0.04 1.82 5.24 -2.39 -0.01 1.81 16 14 C -0.52 -30.29 8.86 25.60 0.23 -30.07 16 15 H 0.03 2.12 8.06 -2.92 -0.02 2.10 16 16 C 0.02 0.98 5.47 84.66 0.46 1.44 16 17 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 18 Si 0.94 46.66 27.02 68.60 1.85 48.52 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 21 H -0.26 -12.41 6.77 99.48 0.67 -11.74 16 22 C 0.09 4.25 3.93 86.33 0.34 4.59 16 23 N -0.32 -13.24 9.88 -55.10 -0.54 -13.78 16 24 N -0.25 -9.11 11.41 -47.57 -0.54 -9.65 16 25 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.19 2.85 7.09 -2.91 -0.02 2.83 16 31 H 0.19 2.99 7.21 -2.91 -0.02 2.97 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 2.20 6.73 -2.39 -0.02 2.19 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.02 1.11 8.12 -2.39 -0.02 1.09 16 40 H 0.04 2.22 7.73 -2.39 -0.02 2.20 16 Total: -1.00 -76.80 323.52 2.49 -74.30 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.99 Total: 7.19 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 5.10 Total: -17.48 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -4.08 Total: -104.72 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -1.37 Total: -7.82 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.85 Total: 48.52 kcal Total: -76.80 2.49 -74.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.330 kcal (2) G-P(sol) polarization free energy of solvation -76.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds