Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99513 * 2 1 4 4 C 1.50705 * 109.46814 * 179.97438 * 3 2 1 5 5 C 1.38625 * 120.40069 * 359.97438 * 4 3 2 6 6 C 1.38582 * 118.55615 * 180.02562 * 5 4 3 7 7 N 1.32292 * 119.20161 * 0.02562 * 6 5 4 8 8 C 1.32474 * 120.73714 * 359.97438 * 7 6 5 9 9 N 1.38408 * 119.21878 * 180.02562 * 8 7 6 10 10 C 1.46846 * 111.00475 * 124.21111 * 9 8 7 11 11 C 1.53034 * 109.52366 * 174.16417 * 10 9 8 12 12 C 1.53123 * 109.31295 * 59.15816 * 11 10 9 13 13 C 1.53115 * 109.15599 * 302.40573 * 12 11 10 14 14 H 1.09001 * 109.50153 * 297.62985 * 13 12 11 15 15 C 1.50702 * 109.50104 * 177.55377 * 13 12 11 16 16 H 1.08002 * 120.00299 * 0.08173 * 15 13 12 17 17 C 1.37884 * 119.99942 * 179.79731 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.46853 * 110.99471 * 0.02562 * 9 8 7 24 24 N 1.32264 * 120.40116 * 180.29425 * 4 3 2 25 25 H 1.08998 * 109.46848 * 60.00147 * 1 2 3 26 26 H 1.09002 * 109.46584 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47480 * 300.00040 * 1 2 3 28 28 H 1.09000 * 109.47157 * 59.99889 * 3 2 1 29 29 H 1.08996 * 109.47024 * 299.99467 * 3 2 1 30 30 H 1.08005 * 120.72380 * 0.04684 * 5 4 3 31 31 H 1.08003 * 120.39786 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.46012 * 294.18320 * 10 9 8 33 33 H 1.08996 * 109.46190 * 54.14416 * 10 9 8 34 34 H 1.09004 * 109.50087 * 179.11901 * 11 10 9 35 35 H 1.08999 * 109.50490 * 299.23403 * 11 10 9 36 36 H 1.08991 * 109.55573 * 182.47900 * 12 11 10 37 37 H 1.09004 * 109.48618 * 62.28518 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.46055 * 65.82540 * 23 9 8 40 40 H 1.08993 * 109.46279 * 305.85294 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1175 -0.0607 0.0016 6 6 5.5018 -0.1256 0.0027 7 7 6.2006 0.9977 0.0033 8 6 5.5913 2.1741 0.0023 9 7 6.3533 3.3296 0.0024 10 6 6.0005 4.1928 -1.1319 11 6 6.7548 5.5195 -1.0189 12 6 8.2615 5.2463 -1.0106 13 6 8.5951 4.3056 0.1505 14 1 8.3413 4.7883 1.0943 15 6 10.0672 3.9836 0.1300 16 1 10.7023 4.4080 -0.6335 17 6 10.6043 3.1517 1.0895 18 7 9.8310 2.6349 2.0192 19 14 12.4303 2.7587 1.0686 20 1 13.2089 4.0157 1.2072 21 1 12.7537 1.8487 2.1968 22 1 12.7801 2.0987 -0.2149 23 6 7.7875 3.0140 0.0031 24 7 4.2698 2.2709 0.0066 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.5229 -0.9624 0.0012 31 1 6.0041 -1.0817 0.0031 32 1 6.2738 3.6978 -2.0637 33 1 4.9273 4.3833 -1.1233 34 1 6.5047 6.1539 -1.8693 35 1 6.4715 6.0216 -0.0939 36 1 8.8017 6.1847 -0.8860 37 1 8.5517 4.7800 -1.9521 38 1 10.2088 2.0493 2.6941 39 1 8.0521 2.5248 -0.9343 40 1 8.0125 2.3483 0.8362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = -2.421401 kcal Electronic energy + Delta-G solvation = -21654.110383 eV Core-core repulsion = 18468.679793 eV Total energy + Delta-G solvation = -3185.430590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24910 -39.79373 -38.74467 -35.66468 -35.05065 -34.20076 -31.71754 -31.45787 -29.10094 -27.13165 -26.74870 -25.80508 -24.49164 -23.06058 -22.70012 -20.48822 -18.98496 -18.50173 -17.98497 -17.05661 -16.96176 -16.74739 -16.40716 -16.13956 -15.87042 -15.41387 -15.19226 -14.94659 -14.49381 -14.39792 -14.12038 -13.60647 -13.45308 -13.43790 -12.84875 -12.62960 -12.37642 -12.29466 -12.18534 -11.86667 -11.80463 -11.72299 -11.51717 -11.04155 -10.88559 -10.86101 -10.60687 -10.42550 -10.10955 -9.24355 -8.08212 -6.23932 0.01579 0.13500 1.42434 1.44337 1.52001 2.06163 2.44107 2.60568 2.84416 3.18869 3.42741 3.53980 3.84872 4.04082 4.07821 4.13403 4.29046 4.35614 4.38747 4.47375 4.51421 4.60187 4.63425 4.68365 4.77923 4.86157 4.91758 4.93197 5.02273 5.18294 5.26368 5.30459 5.38532 5.60434 5.71759 5.87646 5.95811 6.11103 6.13414 6.37579 6.43875 6.87650 7.23028 7.45087 8.95843 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.004399 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.655681 B = 6363.271118 C = 7219.715988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.124 3.876 4 C 0.178 3.822 5 C -0.238 4.238 6 C 0.159 3.841 7 N -0.579 5.579 8 C 0.485 3.515 9 N -0.475 5.475 10 C 0.075 3.925 11 C -0.107 4.107 12 C -0.109 4.109 13 C 0.047 3.953 14 H -0.002 1.002 15 C -0.538 4.538 16 H 0.059 0.941 17 C 0.014 3.986 18 N -0.913 5.913 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.103 3.897 24 N -0.546 5.546 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.177 0.823 31 H 0.193 0.807 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.260 0.740 39 H 0.006 0.994 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.025 -4.368 -6.228 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.047 3.953 4 C 0.030 3.970 5 C -0.261 4.261 6 C -0.007 4.007 7 N -0.300 5.300 8 C 0.129 3.871 9 N -0.194 5.194 10 C -0.051 4.051 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.028 3.972 14 H 0.016 0.984 15 C -0.576 4.576 16 H 0.077 0.923 17 C -0.185 4.185 18 N -0.551 5.551 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.023 4.023 24 N -0.268 5.268 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.194 0.806 31 H 0.210 0.790 32 H 0.050 0.950 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.428 -3.476 -5.650 18.648 hybrid contribution 0.768 -1.303 -0.057 1.514 sum -16.660 -4.780 -5.707 18.248 Atomic orbital electron populations 1.22999 0.78147 1.04396 1.01324 1.87779 1.22251 1.26388 1.95784 1.20900 0.85182 0.85760 1.03429 1.21662 0.96965 0.88530 0.89814 1.22659 0.96057 1.00757 1.06631 1.23691 0.91953 0.96796 0.88250 1.68533 1.42727 0.99611 1.19144 1.21236 0.86916 0.88924 0.90042 1.58586 1.07651 1.11509 1.41677 1.22165 1.01310 0.93361 0.88225 1.21627 0.94564 0.95240 1.03047 1.21628 0.95435 0.99312 0.98313 1.18729 0.93443 0.91350 0.93712 0.98359 1.21471 0.94088 1.29295 1.12752 0.92293 1.25823 1.02209 0.95630 0.94886 1.70040 1.36679 1.32540 1.15877 0.85629 0.80318 0.78203 0.77602 1.19352 1.21109 1.19624 1.21991 0.80179 1.00342 0.99786 1.67566 1.04922 1.34114 1.20155 0.92600 0.87829 0.92884 0.89530 0.88946 0.80608 0.79027 0.94999 0.88635 0.88187 0.91777 0.92154 0.93364 0.93104 0.97563 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -7.46 9.26 -148.98 -1.38 -8.84 16 3 C 0.12 2.55 6.50 71.24 0.46 3.01 16 4 C 0.18 5.27 6.82 42.59 0.29 5.56 16 5 C -0.24 -6.58 9.47 22.44 0.21 -6.37 16 6 C 0.16 5.15 11.30 84.71 0.96 6.11 16 7 N -0.58 -24.90 8.67 -197.99 -1.72 -26.62 16 8 C 0.48 20.93 7.17 261.49 1.87 22.80 16 9 N -0.48 -21.71 4.72 -708.93 -3.34 -25.05 16 10 C 0.07 2.79 5.33 86.32 0.46 3.25 16 11 C -0.11 -3.70 6.09 30.65 0.19 -3.52 16 12 C -0.11 -4.58 5.23 30.67 0.16 -4.42 16 13 C 0.05 2.47 2.26 -11.49 -0.03 2.44 16 14 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 15 C -0.54 -30.48 8.56 25.60 0.22 -30.26 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 17 C 0.01 0.79 5.31 84.66 0.45 1.24 16 18 N -0.91 -55.06 11.35 21.45 0.24 -54.82 16 19 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.10 5.42 3.68 86.33 0.32 5.74 16 24 N -0.55 -20.14 9.60 -186.03 -1.79 -21.92 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.18 3.79 7.11 -2.91 -0.02 3.77 16 31 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 3.20 7.55 -2.39 -0.02 3.18 16 34 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 39 H 0.01 0.33 8.10 -2.39 -0.02 0.31 16 40 H 0.08 5.02 5.65 -2.39 -0.01 5.00 16 Total: -1.00 -71.00 325.27 1.88 -69.12 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.02 Total: 14.28 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.81 Total: 7.13 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.60 Total: -128.41 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -1.38 Total: -8.84 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.00 1.88 -69.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.703 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds