Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00002 * 2 1 4 4 C 1.50694 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.38606 * 120.72157 * 90.00113 * 4 3 2 6 6 N 1.32276 * 119.19835 * 180.02562 * 5 4 3 7 7 C 1.32493 * 120.73903 * 359.97438 * 6 5 4 8 8 N 1.38414 * 119.21398 * 180.02562 * 7 6 5 9 9 C 1.46502 * 119.99644 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.41481 * 35.13978 * 9 8 7 11 11 C 1.52957 * 109.41351 * 154.99903 * 9 8 7 12 12 C 1.53230 * 109.40528 * 183.70452 * 11 9 8 13 13 C 1.51262 * 108.53542 * 305.36889 * 12 11 9 14 14 C 1.37876 * 120.85480 * 231.32574 * 13 12 11 15 15 N 1.31516 * 120.00622 * 180.02562 * 14 13 12 16 16 Si 1.86806 * 119.99651 * 0.02562 * 14 13 12 17 17 H 1.48500 * 109.46896 * 90.00043 * 16 14 13 18 18 H 1.48502 * 109.47286 * 209.99920 * 16 14 13 19 19 H 1.48494 * 109.47240 * 330.00377 * 16 14 13 20 20 C 1.51276 * 118.29777 * 51.35075 * 13 12 11 21 21 C 1.52959 * 109.41223 * 275.34886 * 9 8 7 22 22 N 1.32491 * 121.56924 * 0.27987 * 7 6 5 23 23 C 1.32279 * 120.73528 * 359.43974 * 22 7 6 24 24 H 1.09007 * 109.47089 * 300.00206 * 1 2 3 25 25 H 1.08995 * 109.47300 * 60.00091 * 1 2 3 26 26 H 1.08999 * 109.47442 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47330 * 59.99732 * 3 2 1 28 28 H 1.09004 * 109.47227 * 299.99707 * 3 2 1 29 29 H 1.08000 * 120.40360 * 0.03788 * 5 4 3 30 30 H 0.96991 * 120.00102 * 359.97438 * 8 7 6 31 31 H 1.08998 * 109.48115 * 63.72104 * 11 9 8 32 32 H 1.09004 * 109.48235 * 303.68186 * 11 9 8 33 33 H 1.09001 * 109.62403 * 185.65919 * 12 11 9 34 34 H 1.08996 * 109.62647 * 65.08627 * 12 11 9 35 35 H 0.96995 * 120.00315 * 180.02562 * 15 14 13 36 36 H 1.08991 * 109.62630 * 68.36686 * 20 13 12 37 37 H 1.09003 * 109.62166 * 188.93586 * 20 13 12 38 38 H 1.09000 * 109.48318 * 56.32391 * 21 9 8 39 39 H 1.08996 * 109.48280 * 296.27677 * 21 9 8 40 40 H 1.07999 * 120.39733 * 180.29895 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2188 1.1304 -1.1906 6 7 5.5369 1.0255 -1.1549 7 6 6.1811 0.9746 0.0018 8 7 7.5610 0.8653 0.0023 9 6 8.2906 0.8071 1.2714 10 1 7.6983 0.2603 2.0051 11 6 9.6247 0.0899 1.0584 12 6 10.3462 -0.0529 2.4026 13 6 10.4688 1.3178 3.0306 14 6 11.6858 1.7824 3.4823 15 7 11.7731 2.9767 4.0261 16 14 13.2107 0.7153 3.3220 17 1 13.8705 0.9875 2.0197 18 1 14.1513 1.0267 4.4281 19 1 12.8225 -0.7163 3.3905 20 6 9.2217 2.1656 3.1508 21 6 8.5410 2.2280 1.7794 22 7 5.5356 1.0209 1.1579 23 6 4.2179 1.1312 1.1925 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.6994 1.1720 -2.1366 30 1 8.0447 0.8265 -0.8375 31 1 10.2435 0.6693 0.3733 32 1 9.4427 -0.8986 0.6367 33 1 11.3395 -0.4722 2.2422 34 1 9.7715 -0.7063 3.0590 35 1 12.6294 3.3036 4.3435 36 1 8.5430 1.7176 3.8764 37 1 9.4926 3.1717 3.4712 38 1 7.5910 2.7548 1.8689 39 1 9.1856 2.7568 1.0773 40 1 3.6977 1.1732 2.1380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -21.040685 kcal Electronic energy + Delta-G solvation = -21120.508926 eV Core-core repulsion = 17934.270943 eV Total energy + Delta-G solvation = -3186.237983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94833 -39.28721 -38.58679 -36.07744 -34.60589 -33.95992 -32.40494 -31.46300 -29.19131 -27.68704 -26.03880 -25.67193 -23.87635 -23.44759 -22.71545 -21.21726 -19.17275 -18.55412 -17.96450 -17.29820 -16.74459 -16.45550 -16.35001 -16.02111 -15.92625 -15.52095 -15.01015 -14.68216 -14.31592 -14.10987 -14.06205 -13.95211 -13.38505 -13.11265 -12.89066 -12.76560 -12.60110 -12.34187 -12.01879 -11.85379 -11.80766 -11.65937 -11.43067 -11.31483 -10.83638 -10.59855 -10.54483 -10.50260 -9.97992 -8.96297 -8.15803 -6.11157 0.16473 0.30158 1.40374 1.43210 1.52343 1.96291 2.42013 2.77259 3.12114 3.27193 3.32782 3.76674 3.84132 4.00163 4.03384 4.09947 4.24106 4.52536 4.53061 4.62175 4.65664 4.70499 4.71987 4.91453 4.95686 4.99685 5.00958 5.04478 5.14227 5.22260 5.23967 5.48941 5.56674 5.62002 5.75677 5.82183 5.90114 6.19792 6.31367 6.34988 6.56987 6.95194 7.41700 7.47125 8.95420 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042124 B = 0.003361 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.543207 B = 8328.222727 C = 8519.575831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.127 3.873 4 C -0.269 4.269 5 C 0.205 3.795 6 N -0.593 5.593 7 C 0.554 3.446 8 N -0.688 5.688 9 C 0.186 3.814 10 H 0.069 0.931 11 C -0.108 4.108 12 C -0.013 4.013 13 C -0.501 4.501 14 C 0.020 3.980 15 N -0.934 5.934 16 Si 0.945 3.055 17 H -0.272 1.272 18 H -0.294 1.294 19 H -0.250 1.250 20 C 0.013 3.987 21 C -0.096 4.096 22 N -0.593 5.593 23 C 0.200 3.800 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.196 0.804 30 H 0.414 0.586 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.022 0.978 35 H 0.263 0.737 36 H -0.002 1.002 37 H 0.023 0.977 38 H 0.031 0.969 39 H 0.036 0.964 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.878 -4.572 -10.436 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.050 3.950 4 C -0.277 4.277 5 C 0.038 3.962 6 N -0.316 5.316 7 C 0.198 3.802 8 N -0.323 5.323 9 C 0.081 3.919 10 H 0.087 0.913 11 C -0.146 4.146 12 C -0.051 4.051 13 C -0.520 4.520 14 C -0.178 4.178 15 N -0.573 5.573 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.221 1.221 19 H -0.174 1.174 20 C -0.025 4.025 21 C -0.136 4.136 22 N -0.316 5.316 23 C 0.033 3.967 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.213 0.787 30 H 0.252 0.748 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.016 0.984 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -18.496 -4.721 -10.179 21.633 hybrid contribution 0.177 0.322 0.049 0.371 sum -18.319 -4.399 -10.131 21.391 Atomic orbital electron populations 1.22911 0.79352 1.03572 1.01187 1.87945 1.21439 1.28656 1.95669 1.21034 0.86449 0.84693 1.02796 1.21158 0.98087 1.13413 0.95064 1.23376 0.87598 0.85735 0.99532 1.67999 1.11757 1.23790 1.28041 1.19628 0.87624 0.87804 0.85170 1.44560 1.00717 1.76956 1.10072 1.20636 0.91861 0.96033 0.83367 0.91323 1.21765 0.94617 0.99005 0.99230 1.19707 0.96769 0.95321 0.93335 1.20645 0.93471 1.00443 1.37432 1.25675 1.01471 0.95950 0.94729 1.69990 1.26044 1.19279 1.42028 0.85745 0.79144 0.80396 0.77650 1.19735 1.22086 1.17406 1.19257 0.93940 0.97107 0.92180 1.21741 0.97312 0.95966 0.98555 1.68068 1.11617 1.23049 1.28871 1.23342 0.87790 0.85953 0.99631 0.92968 0.92616 0.89229 0.90792 0.90139 0.78685 0.74819 0.92292 0.91493 0.94158 0.95938 0.92821 0.98394 0.95854 0.95009 0.94501 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.58 10.69 -148.98 -1.59 -9.17 16 3 C 0.13 1.89 6.11 71.23 0.43 2.33 16 4 C -0.27 -5.88 5.54 -19.69 -0.11 -5.99 16 5 C 0.21 4.76 11.00 84.71 0.93 5.69 16 6 N -0.59 -17.97 10.46 -197.98 -2.07 -20.04 16 7 C 0.55 19.03 8.40 261.48 2.20 21.23 16 8 N -0.69 -23.70 5.22 -330.56 -1.73 -25.43 16 9 C 0.19 7.27 2.34 44.96 0.11 7.37 16 10 H 0.07 2.90 7.50 -2.39 -0.02 2.89 16 11 C -0.11 -4.10 5.40 30.66 0.17 -3.94 16 12 C -0.01 -0.59 5.59 30.10 0.17 -0.42 16 13 C -0.50 -26.53 5.51 -16.17 -0.09 -26.62 16 14 C 0.02 1.09 5.46 84.65 0.46 1.55 16 15 N -0.93 -55.59 12.73 21.45 0.27 -55.31 16 16 Si 0.94 42.95 27.27 68.60 1.87 44.83 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.25 -10.59 6.46 99.48 0.64 -9.94 16 20 C 0.01 0.69 5.97 30.11 0.18 0.87 16 21 C -0.10 -4.33 5.51 30.66 0.17 -4.16 16 22 N -0.59 -20.34 9.20 -197.98 -1.82 -22.16 16 23 C 0.20 5.28 11.00 84.71 0.93 6.21 16 24 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 28 H 0.08 0.83 8.10 -2.38 -0.02 0.81 16 29 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.41 12.73 8.71 -92.71 -0.81 11.93 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.73 4.78 -2.39 -0.01 1.72 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.02 1.34 7.07 -2.39 -0.02 1.33 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -67.38 327.07 1.90 -65.48 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.17 Total: 16.17 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 6.80 Total: 5.64 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -5.34 Total: -122.94 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.59 Total: -9.17 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.87 Total: 44.83 kcal Total: -67.38 1.90 -65.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.434 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds