Wall clock time and date at job start Mon Mar 30 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48493 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47358 * 299.99758 * 3 2 1 6 6 H 1.48504 * 109.47242 * 60.00268 * 3 2 1 7 7 C 1.40429 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99863 * 171.23278 * 7 2 1 9 9 C 1.40172 * 120.00129 * 351.23795 * 7 2 1 10 10 C 1.39441 * 120.04199 * 153.81690 * 9 7 2 11 11 C 1.41133 * 118.85908 * 179.72263 * 10 9 7 12 12 N 1.33911 * 120.53608 * 180.02562 * 11 10 9 13 13 C 1.34097 * 119.99852 * 185.44390 * 12 11 10 14 14 N 1.31355 * 119.99957 * 61.16906 * 13 12 11 15 15 N 1.38285 * 120.00249 * 241.16945 * 13 12 11 16 16 C 1.46498 * 119.99840 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46939 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47172 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.46802 * 179.97438 * 18 17 16 20 20 N 1.46902 * 109.46881 * 179.97438 * 19 18 17 21 21 C 1.41830 * 118.92192 * 0.02562 * 11 10 9 22 22 C 1.34784 * 119.99989 * 359.97438 * 21 11 10 23 23 N 1.36073 * 121.19651 * 0.04516 * 22 21 11 24 24 H 0.97004 * 119.44828 * 179.97438 * 23 22 21 25 25 H 0.97007 * 119.99875 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.57045 * 359.70503 * 10 9 7 27 27 H 0.97000 * 119.99894 * 180.02562 * 14 13 12 28 28 H 0.96994 * 119.99714 * 0.02562 * 15 13 12 29 29 H 1.08999 * 109.47663 * 300.00443 * 16 15 13 30 30 H 1.09003 * 109.47044 * 60.00634 * 16 15 13 31 31 H 1.08999 * 109.47360 * 300.00697 * 17 16 15 32 32 H 1.09005 * 109.47195 * 60.00463 * 17 16 15 33 33 H 1.08989 * 109.47351 * 299.99998 * 18 17 16 34 34 H 1.09003 * 109.47007 * 60.00582 * 18 17 16 35 35 H 1.08993 * 109.47683 * 300.00074 * 19 18 17 36 36 H 1.09005 * 109.47335 * 60.00506 * 19 18 17 37 37 H 1.00907 * 110.99896 * 56.04966 * 20 19 18 38 38 H 1.00901 * 110.99996 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.99374 * 180.02562 * 21 11 10 40 40 H 1.08007 * 119.39881 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3464 0.0006 5 1 1.8807 2.3964 -1.2125 6 1 1.8806 2.3964 1.2126 7 6 2.0074 -1.2162 0.0005 8 1 3.0780 -1.2217 -0.1420 9 6 1.3188 -2.4229 0.1860 10 6 1.8382 -3.6095 -0.3303 11 6 1.1272 -4.8111 -0.1238 12 7 1.5955 -5.9699 -0.6044 13 6 0.8600 -7.0861 -0.4978 14 7 -0.3184 -7.1537 -1.0741 15 7 1.3420 -8.1660 0.2190 16 6 0.5382 -9.3851 0.3359 17 6 1.2962 -10.4174 1.1730 18 6 0.4570 -11.6910 1.2946 19 6 1.2154 -12.7234 2.1311 20 7 0.4094 -13.9460 2.2484 21 6 -0.0912 -4.7712 0.6010 22 6 -0.5522 -3.5988 1.0803 23 7 0.1312 -2.4389 0.8823 24 1 -0.2241 -1.6093 1.2382 25 1 -0.4850 0.8401 0.0004 26 1 2.7684 -3.6091 -0.8790 27 1 -0.8506 -7.9610 -0.9967 28 1 2.2120 -8.1159 0.6449 29 1 -0.4100 -9.1503 0.8195 30 1 0.3485 -9.7920 -0.6574 31 1 2.2442 -10.6522 0.6890 32 1 1.4863 -10.0109 2.1664 33 1 -0.4911 -11.4565 1.7783 34 1 0.2674 -12.0974 0.3011 35 1 2.1633 -12.9579 1.6470 36 1 1.4054 -12.3174 3.1247 37 1 0.1648 -14.3066 1.3382 38 1 0.8887 -14.6439 2.7973 39 1 -0.6492 -5.6804 0.7695 40 1 -1.4810 -3.5797 1.6312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167881507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:39 Heat of formation + Delta-G solvation = 30.277207 kcal Electronic energy + Delta-G solvation = -20233.465109 eV Core-core repulsion = 17081.745188 eV Total energy + Delta-G solvation = -3151.719921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76232 -39.08538 -37.34511 -36.12856 -35.21238 -33.46600 -32.43788 -31.36558 -30.40319 -28.12186 -27.49857 -24.22161 -23.49399 -22.95381 -22.18800 -20.72207 -19.67262 -18.49981 -18.02278 -17.41355 -17.07765 -16.89753 -16.51495 -16.30550 -15.67414 -15.50619 -15.27406 -14.72870 -14.59636 -14.57987 -13.72258 -13.42975 -13.15417 -13.05415 -12.97853 -12.82446 -12.59142 -12.53410 -12.19167 -12.07713 -11.83097 -11.66266 -11.52521 -11.36201 -10.13942 -10.02352 -9.64668 -9.62683 -9.05216 -8.89416 -7.94966 -6.84623 0.68469 0.83380 1.44410 1.54589 1.60735 2.13746 2.16710 2.43420 2.69658 2.93832 3.46596 3.59504 3.86167 3.93290 4.09754 4.27370 4.33615 4.40858 4.57237 4.65570 4.69592 4.73547 4.84255 4.85589 4.92377 4.94975 5.05537 5.24358 5.26126 5.30241 5.52167 5.78315 5.88374 5.99419 6.10948 6.20109 6.28198 6.42922 6.57158 6.80080 6.91978 7.10177 7.97476 8.10569 8.17015 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.048215 B = 0.002627 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.587918 B =10656.211876 C =10745.120991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.047 3.953 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.474 4.474 8 H 0.108 0.892 9 C 0.321 3.679 10 C -0.369 4.369 11 C 0.321 3.679 12 N -0.711 5.711 13 C 0.605 3.395 14 N -0.870 5.870 15 N -0.770 5.770 16 C 0.131 3.869 17 C -0.112 4.112 18 C -0.108 4.108 19 C 0.064 3.936 20 N -0.862 5.862 21 C -0.292 4.292 22 C 0.144 3.856 23 N -0.579 5.579 24 H 0.425 0.575 25 H 0.310 0.690 26 H 0.103 0.897 27 H 0.308 0.692 28 H 0.389 0.611 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.346 0.654 38 H 0.351 0.649 39 H 0.118 0.882 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 -8.210 8.280 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.172 4.172 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.506 4.506 8 H 0.126 0.874 9 C 0.210 3.790 10 C -0.398 4.398 11 C 0.177 3.823 12 N -0.450 5.450 13 C 0.238 3.762 14 N -0.516 5.516 15 N -0.415 5.415 16 C 0.006 3.994 17 C -0.150 4.150 18 C -0.147 4.147 19 C -0.067 4.067 20 N -0.393 5.393 21 C -0.321 4.321 22 C 0.012 3.988 23 N -0.189 5.189 24 H 0.269 0.731 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.222 0.778 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.757 -7.407 7.666 10.687 hybrid contribution 0.638 -0.805 -0.031 1.027 sum -0.119 -8.212 7.635 11.214 Atomic orbital electron populations 1.69127 1.08870 1.33130 1.33787 1.27035 0.95814 1.05126 0.89218 0.84792 0.79253 0.74404 0.79325 1.18051 1.19268 1.17823 1.19927 0.97513 0.89259 1.43884 0.87418 1.18041 0.82184 0.94288 0.84536 1.20406 1.07895 0.90061 1.21443 1.18822 0.88213 0.90483 0.84830 1.68496 1.35260 0.97490 1.43750 1.20513 0.85118 0.87403 0.83171 1.71090 1.08585 1.32704 1.39270 1.46233 1.22946 1.14754 1.57524 1.21179 0.94527 0.84658 0.99049 1.21573 0.99078 0.94310 1.00067 1.21407 0.98994 0.93826 1.00434 1.21733 0.94147 0.90829 1.00020 1.58689 1.49469 1.08834 1.22333 1.21321 1.01381 0.98212 1.11191 1.22040 0.96284 0.85199 0.95257 1.42297 1.20623 1.10267 1.45724 0.73114 0.87738 0.87839 0.87930 0.77795 0.93578 0.93927 0.90994 0.90882 0.91574 0.91682 0.94847 0.91041 0.84112 0.83582 0.86401 0.79478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -32.40 10.94 21.91 0.24 -32.16 16 2 C 0.05 1.83 5.32 85.42 0.45 2.29 16 3 Si 1.00 29.92 29.57 68.60 2.03 31.95 16 4 H -0.26 -7.78 7.11 99.48 0.71 -7.08 16 5 H -0.27 -8.00 7.11 99.48 0.71 -7.29 16 6 H -0.25 -7.03 7.11 99.48 0.71 -6.32 16 7 C -0.47 -21.04 9.07 23.27 0.21 -20.83 16 8 H 0.11 4.67 7.87 -2.91 -0.02 4.64 16 9 C 0.32 15.15 6.35 38.98 0.25 15.39 16 10 C -0.37 -19.11 9.81 23.27 0.23 -18.88 16 11 C 0.32 16.74 6.56 40.43 0.27 17.00 16 12 N -0.71 -38.09 10.56 -190.77 -2.01 -40.10 16 13 C 0.60 29.25 6.91 261.32 1.81 31.05 16 14 N -0.87 -43.01 12.86 -59.55 -0.77 -43.78 16 15 N -0.77 -29.31 5.70 -350.76 -2.00 -31.31 16 16 C 0.13 3.87 5.04 86.38 0.44 4.31 16 17 C -0.11 -2.37 5.33 30.59 0.16 -2.21 16 18 C -0.11 -1.94 5.47 30.59 0.17 -1.77 16 19 C 0.06 0.97 6.79 86.30 0.59 1.56 16 20 N -0.86 -12.05 9.62 -186.72 -1.80 -13.85 16 21 C -0.29 -13.34 8.92 22.37 0.20 -13.14 16 22 C 0.14 5.49 11.15 83.24 0.93 6.42 16 23 N -0.58 -23.78 4.88 -187.93 -0.92 -24.70 16 24 H 0.43 16.10 6.37 -92.71 -0.59 15.51 16 25 H 0.31 10.69 8.29 -92.70 -0.77 9.92 16 26 H 0.10 5.51 8.06 -2.91 -0.02 5.49 16 27 H 0.31 13.63 7.20 -92.71 -0.67 12.96 16 28 H 0.39 14.04 8.60 -92.71 -0.80 13.24 16 29 H 0.05 1.40 7.98 -2.39 -0.02 1.38 16 30 H 0.04 1.31 7.98 -2.39 -0.02 1.29 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.35 4.11 8.99 -89.69 -0.81 3.31 16 38 H 0.35 3.66 9.08 -89.69 -0.81 2.85 16 39 H 0.12 5.44 6.49 -2.91 -0.02 5.43 16 40 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -63.34 336.00 -2.10 -65.44 By element: Atomic # 1 Polarization: 69.88 SS G_CDS: -2.57 Total: 67.31 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 5.69 Total: 21.19 kcal Atomic # 7 Polarization: -178.64 SS G_CDS: -7.25 Total: -185.89 kcal Atomic # 14 Polarization: 29.92 SS G_CDS: 2.03 Total: 31.95 kcal Total: -63.34 -2.10 -65.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167881507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.719 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds