Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99767 * 2 1 4 4 C 1.53000 * 109.46726 * 209.99440 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 3 7 7 N 1.46496 * 109.47487 * 179.97438 * 6 5 4 8 8 C 1.37938 * 119.99963 * 275.00193 * 7 6 5 9 9 N 1.32613 * 120.23958 * 359.97438 * 8 7 6 10 10 C 1.32242 * 120.09135 * 179.97438 * 9 8 7 11 11 C 1.38977 * 120.56273 * 0.02562 * 10 9 8 12 12 N 1.31718 * 120.47837 * 359.97438 * 11 10 9 13 13 C 1.33914 * 119.89218 * 359.74841 * 12 11 10 14 14 C 1.40821 * 120.27365 * 180.25252 * 13 12 11 15 15 H 1.08004 * 119.99599 * 180.26649 * 14 13 12 16 16 C 1.40115 * 120.00146 * 0.27432 * 14 13 12 17 17 N 1.30730 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47425 * 59.99808 * 18 16 14 20 20 H 1.48504 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47146 * 299.99168 * 18 16 14 22 22 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 6 5 24 24 H 1.09004 * 109.46719 * 60.00236 * 1 2 3 25 25 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47636 * 300.00412 * 1 2 3 27 27 H 1.08992 * 109.47388 * 329.99699 * 3 2 1 28 28 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 29 29 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 30 30 H 1.08996 * 109.47853 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 33 33 H 0.97007 * 119.99693 * 95.00333 * 7 6 5 34 34 H 1.07991 * 119.71994 * 179.97438 * 10 9 8 35 35 H 1.08002 * 119.75777 * 179.97438 * 11 10 9 36 36 H 0.97006 * 120.00005 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.46935 * 299.99411 * 22 6 5 38 38 H 1.09001 * 109.46812 * 179.97438 * 22 6 5 39 39 H 1.08993 * 109.47194 * 179.97438 * 23 22 6 40 40 H 1.09002 * 109.46695 * 59.99734 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2632 -0.7211 5 6 3.9815 2.6608 -0.7206 6 6 4.1890 3.1262 0.7220 7 7 4.7857 4.4641 0.7225 8 6 6.1535 4.6093 0.6188 9 7 6.9328 3.5410 0.5188 10 6 8.2437 3.6836 0.4189 11 6 8.8189 4.9488 0.4180 12 7 8.0659 6.0251 0.5162 13 6 6.7359 5.9025 0.6126 14 6 5.9229 7.0480 0.7126 15 1 4.8510 6.9438 0.7945 16 6 6.5044 8.3227 0.7057 17 7 7.8019 8.4487 0.6068 18 14 5.4258 9.8421 0.8376 19 1 4.6666 9.8011 2.1131 20 1 6.2778 11.0581 0.8080 21 1 4.4756 9.8752 -0.3032 22 6 2.8402 3.1684 1.4432 23 6 2.2176 1.7708 1.4427 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.3450 1.9994 -0.5138 28 1 4.0242 0.5693 -0.2073 29 1 3.2112 0.9313 -1.7488 30 1 4.9422 2.6309 -1.2347 31 1 3.3165 3.3550 -1.2343 32 1 4.8541 2.4320 1.2356 33 1 4.2189 5.2480 0.7959 34 1 8.8727 2.8095 0.3382 35 1 9.8910 5.0501 0.3362 36 1 8.2046 9.3312 0.6024 37 1 2.1751 3.8626 0.9296 38 1 2.9881 3.4995 2.4711 39 1 1.2571 1.8008 1.9569 40 1 2.8828 1.0766 1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168603151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = -12.261578 kcal Electronic energy + Delta-G solvation = -21608.050504 eV Core-core repulsion = 18422.193211 eV Total energy + Delta-G solvation = -3185.857292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.44033 -38.72969 -36.75999 -33.94660 -33.80245 -31.46416 -30.69560 -29.79746 -27.65600 -26.23469 -25.80260 -22.60833 -22.55704 -21.63540 -20.80417 -19.75929 -17.58008 -16.70991 -16.61980 -15.95670 -15.57607 -15.15918 -14.95340 -14.14226 -14.07958 -14.00108 -13.39035 -13.11614 -12.98763 -12.90321 -12.31721 -12.13032 -12.03732 -11.82343 -11.43617 -11.31794 -11.04959 -11.00147 -10.81745 -10.74529 -10.60445 -10.24006 -10.12738 -9.79583 -9.50958 -9.33101 -9.27746 -8.53051 -7.31454 -6.77052 -6.39252 -4.40351 2.68635 3.04722 3.05547 3.09257 3.27625 3.66576 3.89174 4.31540 4.75468 4.76670 4.82621 5.10643 5.19421 5.23561 5.34661 5.39329 5.49113 5.58952 5.62148 5.67844 5.74938 5.91062 5.99947 6.05816 6.12577 6.16670 6.20705 6.29318 6.37841 6.43307 6.66536 6.67999 6.84106 7.02893 7.09993 7.16767 7.69057 7.99377 8.15886 8.43967 8.64854 8.90318 9.49906 10.02858 10.26085 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.004572 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.191422 B = 6123.053482 C = 7158.697932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.089 3.911 4 C -0.110 4.110 5 C -0.125 4.125 6 C 0.166 3.834 7 N -0.720 5.720 8 C 0.264 3.736 9 N -0.498 5.498 10 C -0.084 4.084 11 C 0.028 3.972 12 N -0.449 5.449 13 C 0.194 3.806 14 C -0.424 4.424 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.715 5.715 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.125 4.125 23 C -0.133 4.133 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.401 0.599 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.274 0.726 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -7.955 -0.385 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.031 3.969 4 C -0.149 4.149 5 C -0.164 4.164 6 C 0.059 3.941 7 N -0.360 5.360 8 C 0.017 3.983 9 N -0.219 5.219 10 C -0.238 4.238 11 C -0.135 4.135 12 N -0.167 5.167 13 C 0.060 3.940 14 C -0.459 4.459 15 H 0.099 0.901 16 C -0.156 4.156 17 N -0.337 5.337 18 Si 0.731 3.269 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.163 4.163 23 C -0.172 4.172 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.275 -8.170 -0.402 13.930 hybrid contribution -0.761 1.154 0.054 1.383 sum -12.035 -7.016 -0.348 13.936 Atomic orbital electron populations 1.22746 0.81667 1.02342 0.99788 1.87913 1.19163 1.28474 1.95091 1.22251 0.95179 0.83787 0.95655 1.21543 0.94712 0.98384 1.00215 1.21937 1.01149 0.94535 0.98778 1.20573 0.92775 0.86441 0.94281 1.43746 1.02819 1.06053 1.83375 1.19292 0.85233 0.90959 1.02814 1.67301 1.05537 1.31757 1.17311 1.22269 0.90537 0.96773 1.14263 1.23142 0.99635 0.90315 1.00411 1.69488 1.03340 1.27748 1.16122 1.19039 0.90218 0.90311 0.94460 1.19189 0.93879 0.89627 1.43178 0.90050 1.25998 0.95181 1.00561 0.93908 1.70089 1.10547 1.24639 1.28438 0.86402 0.80506 0.80185 0.79839 1.18941 1.20185 1.18945 1.21776 0.96819 0.96337 1.01402 1.21935 1.01029 0.97173 0.97014 0.94253 0.89975 0.94227 0.92323 0.91003 0.91754 0.90701 0.92515 0.90182 0.76240 0.86075 0.85959 0.91440 0.91848 0.91141 0.92039 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.39 -4.82 10.35 -35.23 -0.36 -5.18 16 3 C 0.09 1.07 2.61 -26.73 -0.07 1.00 16 4 C -0.11 -1.48 5.57 -26.73 -0.15 -1.62 16 5 C -0.12 -1.93 5.51 -26.73 -0.15 -2.08 16 6 C 0.17 2.75 2.47 -67.93 -0.17 2.58 16 7 N -0.72 -14.30 5.12 -53.41 -0.27 -14.57 16 8 C 0.26 6.38 7.48 -154.83 -1.16 5.22 16 9 N -0.50 -12.00 9.34 -11.67 -0.11 -12.11 16 10 C -0.08 -1.98 11.22 -17.10 -0.19 -2.18 16 11 C 0.03 0.69 11.21 -17.33 -0.19 0.49 16 12 N -0.45 -12.44 8.03 -10.79 -0.09 -12.53 16 13 C 0.19 5.19 6.56 -84.61 -0.56 4.63 16 14 C -0.42 -10.77 8.89 -37.90 -0.34 -11.10 16 15 H 0.08 1.85 6.12 -52.48 -0.32 1.53 16 16 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 17 N -0.71 -18.77 11.48 55.56 0.64 -18.13 16 18 Si 0.91 17.92 29.56 -169.99 -5.03 12.89 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.13 -1.65 5.39 -26.73 -0.14 -1.79 16 23 C -0.13 -1.58 5.54 -26.73 -0.15 -1.73 16 24 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 27 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.50 7.54 -51.93 -0.39 1.11 16 33 H 0.40 7.53 6.59 -40.82 -0.27 7.27 16 34 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 36 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -29.62 325.39 -8.57 -38.18 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.99 Total: 10.12 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.27 Total: -3.59 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.17 Total: -57.34 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.36 Total: -5.18 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.62 -8.57 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168603151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.923 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds