Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99767 * 2 1 4 4 C 1.53000 * 109.46726 * 209.99440 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 3 7 7 N 1.46496 * 109.47487 * 179.97438 * 6 5 4 8 8 C 1.37938 * 119.99963 * 275.00193 * 7 6 5 9 9 N 1.32613 * 120.23958 * 359.97438 * 8 7 6 10 10 C 1.32242 * 120.09135 * 179.97438 * 9 8 7 11 11 C 1.38977 * 120.56273 * 0.02562 * 10 9 8 12 12 N 1.31718 * 120.47837 * 359.97438 * 11 10 9 13 13 C 1.33914 * 119.89218 * 359.74841 * 12 11 10 14 14 C 1.40821 * 120.27365 * 180.25252 * 13 12 11 15 15 H 1.08004 * 119.99599 * 180.26649 * 14 13 12 16 16 C 1.40115 * 120.00146 * 0.27432 * 14 13 12 17 17 N 1.30730 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47425 * 59.99808 * 18 16 14 20 20 H 1.48504 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47146 * 299.99168 * 18 16 14 22 22 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 6 5 24 24 H 1.09004 * 109.46719 * 60.00236 * 1 2 3 25 25 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47636 * 300.00412 * 1 2 3 27 27 H 1.08992 * 109.47388 * 329.99699 * 3 2 1 28 28 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 29 29 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 30 30 H 1.08996 * 109.47853 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 33 33 H 0.97007 * 119.99693 * 95.00333 * 7 6 5 34 34 H 1.07991 * 119.71994 * 179.97438 * 10 9 8 35 35 H 1.08002 * 119.75777 * 179.97438 * 11 10 9 36 36 H 0.97006 * 120.00005 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.46935 * 299.99411 * 22 6 5 38 38 H 1.09001 * 109.46812 * 179.97438 * 22 6 5 39 39 H 1.08993 * 109.47194 * 179.97438 * 23 22 6 40 40 H 1.09002 * 109.46695 * 59.99734 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2632 -0.7211 5 6 3.9815 2.6608 -0.7206 6 6 4.1890 3.1262 0.7220 7 7 4.7857 4.4641 0.7225 8 6 6.1535 4.6093 0.6188 9 7 6.9328 3.5410 0.5188 10 6 8.2437 3.6836 0.4189 11 6 8.8189 4.9488 0.4180 12 7 8.0659 6.0251 0.5162 13 6 6.7359 5.9025 0.6126 14 6 5.9229 7.0480 0.7126 15 1 4.8510 6.9438 0.7945 16 6 6.5044 8.3227 0.7057 17 7 7.8019 8.4487 0.6068 18 14 5.4258 9.8421 0.8376 19 1 4.6666 9.8011 2.1131 20 1 6.2778 11.0581 0.8080 21 1 4.4756 9.8752 -0.3032 22 6 2.8402 3.1684 1.4432 23 6 2.2176 1.7708 1.4427 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.3450 1.9994 -0.5138 28 1 4.0242 0.5693 -0.2073 29 1 3.2112 0.9313 -1.7488 30 1 4.9422 2.6309 -1.2347 31 1 3.3165 3.3550 -1.2343 32 1 4.8541 2.4320 1.2356 33 1 4.2189 5.2480 0.7959 34 1 8.8727 2.8095 0.3382 35 1 9.8910 5.0501 0.3362 36 1 8.2046 9.3312 0.6024 37 1 2.1751 3.8626 0.9296 38 1 2.9881 3.4995 2.4711 39 1 1.2571 1.8008 1.9569 40 1 2.8828 1.0766 1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168603151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = -30.566016 kcal Electronic energy + Delta-G solvation = -21608.844244 eV Core-core repulsion = 18422.193211 eV Total energy + Delta-G solvation = -3186.651032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96862 -40.09580 -37.93729 -35.80838 -35.29063 -33.33456 -31.81990 -31.33728 -28.99315 -27.77826 -27.04263 -24.24208 -23.76391 -23.29585 -22.24310 -20.95659 -19.46255 -18.34889 -17.70796 -17.49890 -16.88515 -16.47676 -16.01004 -15.80190 -15.62783 -15.28075 -14.78362 -14.68304 -14.39788 -14.03108 -13.86413 -13.42525 -13.18740 -13.15723 -12.90641 -12.85981 -12.40366 -12.15040 -12.08189 -11.97383 -11.93743 -11.80705 -11.53848 -11.30365 -11.17683 -11.06571 -10.43544 -10.28904 -9.20697 -8.56544 -8.24165 -6.30949 0.83206 1.29159 1.44051 1.56198 1.58690 2.23922 2.63166 2.90497 2.93237 3.73253 3.78044 3.95841 4.09022 4.17801 4.27720 4.29787 4.35130 4.41233 4.51796 4.52629 4.54400 4.58352 4.63439 4.76279 4.86261 4.92491 4.99728 5.06837 5.09699 5.15950 5.20560 5.21415 5.24338 5.42930 5.46897 5.84195 6.14785 6.33292 6.35643 6.73139 6.83612 7.05248 7.66493 8.12772 8.45623 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.004572 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.191422 B = 6123.053482 C = 7158.697932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.093 3.907 4 C -0.105 4.105 5 C -0.115 4.115 6 C 0.165 3.835 7 N -0.711 5.711 8 C 0.263 3.737 9 N -0.510 5.510 10 C -0.084 4.084 11 C 0.005 3.995 12 N -0.487 5.487 13 C 0.158 3.842 14 C -0.446 4.446 15 H 0.101 0.899 16 C 0.022 3.978 17 N -0.758 5.758 18 Si 0.988 3.012 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.255 1.255 22 C -0.115 4.115 23 C -0.127 4.127 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.406 0.594 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.279 0.721 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 -7.879 -0.239 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.036 3.964 4 C -0.143 4.143 5 C -0.154 4.154 6 C 0.059 3.941 7 N -0.351 5.351 8 C 0.015 3.985 9 N -0.232 5.232 10 C -0.238 4.238 11 C -0.157 4.157 12 N -0.206 5.206 13 C 0.024 3.976 14 C -0.480 4.480 15 H 0.119 0.881 16 C -0.200 4.200 17 N -0.381 5.381 18 Si 0.808 3.192 19 H -0.179 1.179 20 H -0.199 1.199 21 H -0.179 1.179 22 C -0.153 4.153 23 C -0.165 4.165 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.116 -8.142 -0.255 16.298 hybrid contribution 0.116 1.008 -0.005 1.015 sum -14.000 -7.134 -0.260 15.715 Atomic orbital electron populations 1.22972 0.79776 1.03676 1.00810 1.87884 1.21254 1.28380 1.95206 1.22152 0.94449 0.84326 0.95521 1.21449 0.95507 0.96446 1.00904 1.21778 0.99874 0.96225 0.97554 1.20730 0.94007 0.84120 0.95259 1.43860 1.01333 1.07742 1.82130 1.19493 0.86961 0.90390 1.01639 1.67431 1.05861 1.31631 1.18280 1.22728 0.90830 0.97463 1.12760 1.23494 1.00570 0.90420 1.01182 1.69416 1.04314 1.29294 1.17571 1.19535 0.90546 0.91910 0.95652 1.19657 0.94860 0.90068 1.43461 0.88115 1.27007 0.96456 1.03738 0.92782 1.70218 1.12719 1.25723 1.29463 0.85167 0.78348 0.75402 0.80266 1.17927 1.19950 1.17938 1.21694 0.94821 0.97823 1.00997 1.21888 1.01723 0.95760 0.97168 0.93253 0.88646 0.93121 0.90799 0.92277 0.90998 0.93998 0.91483 0.92657 0.75657 0.83210 0.84067 0.91048 0.90054 0.91134 0.89746 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -9.13 10.35 -148.98 -1.54 -10.67 16 3 C 0.09 2.02 2.61 30.60 0.08 2.10 16 4 C -0.10 -2.69 5.57 30.59 0.17 -2.52 16 5 C -0.11 -3.49 5.51 30.59 0.17 -3.32 16 6 C 0.16 5.35 2.47 44.99 0.11 5.46 16 7 N -0.71 -28.06 5.12 -322.89 -1.65 -29.71 16 8 C 0.26 12.93 7.48 134.03 1.00 13.93 16 9 N -0.51 -24.98 9.34 -190.83 -1.78 -26.77 16 10 C -0.08 -4.02 11.22 84.81 0.95 -3.06 16 11 C 0.00 0.24 11.21 84.89 0.95 1.19 16 12 N -0.49 -27.83 8.03 -188.04 -1.51 -29.34 16 13 C 0.16 8.67 6.56 40.35 0.26 8.93 16 14 C -0.45 -22.77 8.89 23.36 0.21 -22.56 16 15 H 0.10 4.51 6.12 -2.91 -0.02 4.49 16 16 C 0.02 1.08 5.50 85.31 0.47 1.54 16 17 N -0.76 -40.63 11.48 21.85 0.25 -40.38 16 18 Si 0.99 36.22 29.56 68.60 2.03 38.24 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 C -0.12 -2.78 5.39 30.60 0.16 -2.61 16 23 C -0.13 -2.70 5.54 30.59 0.17 -2.53 16 24 H 0.05 0.63 8.09 -2.38 -0.02 0.61 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 0.64 7.87 -2.39 -0.02 0.62 16 27 H 0.07 1.40 7.79 -2.39 -0.02 1.38 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.09 7.54 -2.39 -0.02 2.07 16 33 H 0.41 14.88 6.59 -92.70 -0.61 14.27 16 34 H 0.15 6.07 8.06 -2.92 -0.02 6.04 16 35 H 0.14 6.31 8.06 -2.91 -0.02 6.29 16 36 H 0.28 13.58 8.29 -92.70 -0.77 12.82 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.45 7.87 -2.39 -0.02 1.43 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.47 325.39 2.16 -63.31 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.43 Total: 37.19 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.94 Total: -1.88 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -4.70 Total: -126.20 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -1.54 Total: -10.67 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.24 kcal Total: -65.47 2.16 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168603151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds