Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00468 * 2 1 4 4 C 1.52994 * 109.47233 * 210.00104 * 3 2 1 5 5 C 1.52999 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47105 * 60.00160 * 5 4 3 7 7 N 1.46495 * 109.46960 * 59.99518 * 6 5 4 8 8 C 1.38803 * 119.99679 * 155.00359 * 7 6 5 9 9 C 1.40090 * 120.75929 * 180.02562 * 8 7 6 10 10 N 1.31660 * 119.13701 * 179.97438 * 9 8 7 11 11 C 1.33594 * 120.79493 * 359.97438 * 10 9 8 12 12 C 1.41144 * 119.17343 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99977 * 359.97438 * 12 11 10 14 14 C 1.40045 * 120.00031 * 180.02562 * 12 11 10 15 15 N 1.30730 * 120.00049 * 359.72571 * 14 12 11 16 16 Si 1.86800 * 120.00245 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47090 * 89.99791 * 16 14 12 18 18 H 1.48495 * 109.47520 * 210.00133 * 16 14 12 19 19 H 1.48507 * 109.46786 * 330.00091 * 16 14 12 20 20 N 1.33604 * 121.65774 * 0.27816 * 11 10 9 21 21 C 1.31665 * 120.78717 * 359.43912 * 20 11 10 22 22 C 1.53003 * 109.46505 * 300.00194 * 6 5 4 23 23 C 1.52999 * 109.47598 * 60.00107 * 22 6 5 24 24 H 1.08991 * 109.46983 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46860 * 300.00667 * 1 2 3 26 26 H 1.08999 * 109.46825 * 59.99624 * 1 2 3 27 27 H 1.09007 * 109.46606 * 330.00174 * 3 2 1 28 28 H 1.08998 * 109.47426 * 59.99817 * 4 3 2 29 29 H 1.08998 * 109.47409 * 299.99866 * 4 3 2 30 30 H 1.08998 * 109.47437 * 299.99918 * 5 4 3 31 31 H 1.09000 * 109.47204 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47005 * 180.02562 * 6 5 4 33 33 H 0.97001 * 120.00623 * 335.00816 * 7 6 5 34 34 H 1.07995 * 120.42708 * 359.95313 * 9 8 7 35 35 H 0.97000 * 120.00283 * 180.02562 * 15 14 12 36 36 H 1.08006 * 120.42947 * 180.27667 * 21 20 11 37 37 H 1.09011 * 109.46695 * 180.02562 * 22 6 5 38 38 H 1.08998 * 109.46916 * 299.99555 * 22 6 5 39 39 H 1.09000 * 109.47204 * 179.97438 * 23 22 6 40 40 H 1.08998 * 109.47136 * 59.99311 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 3.9810 2.6610 -0.7218 6 6 4.1885 3.1275 0.7206 7 7 5.0827 2.1951 1.4115 8 6 5.8285 2.6265 2.4997 9 6 6.6889 1.7487 3.1718 10 7 7.3818 2.1919 4.1999 11 6 7.2718 3.4609 4.6029 12 6 8.0310 3.8998 5.7088 13 1 8.6902 3.2125 6.2182 14 6 7.9287 5.2263 6.1463 15 7 7.1340 6.0593 5.5270 16 14 8.9340 5.8074 7.6095 17 1 10.2428 6.3257 7.1364 18 1 8.2003 6.8875 8.3166 19 1 9.1583 4.6709 8.5387 20 7 6.4575 4.3236 3.9885 21 6 5.7393 3.9499 2.9502 22 6 2.8398 3.1696 1.4418 23 6 2.2177 1.7718 1.4424 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.3450 1.9994 -0.5139 28 1 3.2112 0.9312 -1.7489 29 1 4.0242 0.5692 -0.2075 30 1 3.3157 3.3546 -1.2359 31 1 4.9421 2.6308 -1.2352 32 1 4.6313 4.1235 0.7202 33 1 5.1536 1.2764 1.1085 34 1 6.7824 0.7218 2.8510 35 1 7.0634 6.9782 5.8297 36 1 5.0862 4.6534 2.4551 37 1 2.9875 3.5024 2.4693 38 1 2.1745 3.8633 0.9277 39 1 1.2570 1.8019 1.9565 40 1 2.8830 1.0782 1.9564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168613910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -4.568949 kcal Electronic energy + Delta-G solvation = -21545.891579 eV Core-core repulsion = 18360.367864 eV Total energy + Delta-G solvation = -3185.523715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73440 -38.70543 -37.01509 -34.03137 -32.91352 -31.67111 -30.82503 -29.74992 -28.17606 -26.50972 -25.13667 -23.16028 -22.58902 -21.91002 -21.32175 -19.05903 -17.76276 -16.83731 -16.68943 -15.72761 -15.44262 -15.27833 -15.05892 -14.44948 -14.29193 -13.96479 -13.74615 -13.17539 -12.96140 -12.59305 -12.45911 -12.20849 -12.06855 -11.95742 -11.44601 -11.26751 -11.16076 -11.13479 -10.85859 -10.56959 -10.45161 -10.37562 -10.15211 -9.75736 -9.48473 -9.31727 -9.12622 -8.85542 -7.21123 -6.71206 -6.36340 -4.32001 2.78994 2.96390 3.15099 3.19338 3.23906 3.60657 4.02645 4.26599 4.68255 4.71942 4.81827 4.96882 5.09373 5.14276 5.22724 5.26359 5.36318 5.43807 5.48737 5.53860 5.62492 5.82385 5.85670 5.95810 5.99441 6.04787 6.10724 6.15748 6.20808 6.32359 6.39733 6.45103 6.56499 7.11084 7.14338 7.22077 7.44259 8.22742 8.32765 8.58285 8.62676 8.79620 9.27251 10.29031 10.44562 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037389 B = 0.003612 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.703325 B = 7750.486864 C = 7813.236646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.090 3.910 4 C -0.113 4.113 5 C -0.121 4.121 6 C 0.162 3.838 7 N -0.742 5.742 8 C -0.034 4.034 9 C 0.100 3.900 10 N -0.566 5.566 11 C 0.369 3.631 12 C -0.415 4.415 13 H 0.088 0.912 14 C 0.069 3.931 15 N -0.727 5.727 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.475 5.475 21 C 0.098 3.902 22 C -0.134 4.134 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.384 0.616 34 H 0.125 0.875 35 H 0.270 0.730 36 H 0.126 0.874 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -4.601 -11.491 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.033 3.967 4 C -0.151 4.151 5 C -0.160 4.160 6 C 0.055 3.945 7 N -0.380 5.380 8 C -0.139 4.139 9 C -0.075 4.075 10 N -0.285 5.285 11 C 0.128 3.872 12 C -0.453 4.453 13 H 0.106 0.894 14 C -0.156 4.156 15 N -0.351 5.351 16 Si 0.738 3.262 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.185 1.185 20 N -0.192 5.192 21 C -0.078 4.078 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.219 0.781 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.734 -4.033 -10.660 15.656 hybrid contribution -0.498 -0.120 -0.288 0.587 sum -11.231 -4.153 -10.948 16.225 Atomic orbital electron populations 1.22741 0.81535 1.02419 0.99764 1.87905 1.19265 1.28369 1.95106 1.22203 0.94596 0.83871 0.96034 1.21532 0.95354 0.97907 1.00326 1.21770 1.01219 0.96104 0.96868 1.20575 0.89568 0.94232 0.90169 1.43672 1.48582 1.11743 1.33961 1.19194 1.02203 0.96976 0.95519 1.22175 0.94215 0.97636 0.93424 1.68539 1.26429 1.18130 1.15437 1.19791 0.90949 0.83155 0.93344 1.19071 1.21140 0.95251 1.09797 0.89433 1.25986 0.95149 0.96633 0.97785 1.70147 1.26920 1.04177 1.33892 0.86238 0.79947 0.78981 0.81070 1.19518 1.20278 1.18548 1.69279 1.07630 1.35309 1.06991 1.22705 0.98739 0.91262 0.95117 1.22013 0.97104 0.95999 1.02183 1.21899 1.00867 0.98006 0.96297 0.89918 0.94141 0.94333 0.92549 0.91589 0.90969 0.91105 0.90833 0.90827 0.78141 0.85805 0.91852 0.85717 0.90998 0.92162 0.92641 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.39 -4.64 10.35 -35.23 -0.36 -5.01 16 3 C 0.09 1.00 2.61 -26.73 -0.07 0.93 16 4 C -0.11 -1.20 5.40 -26.73 -0.14 -1.34 16 5 C -0.12 -1.28 5.61 -26.73 -0.15 -1.43 16 6 C 0.16 2.18 2.49 -67.93 -0.17 2.01 16 7 N -0.74 -11.91 4.38 -51.76 -0.23 -12.14 16 8 C -0.03 -0.72 6.70 -83.32 -0.56 -1.28 16 9 C 0.10 2.29 11.20 -16.93 -0.19 2.10 16 10 N -0.57 -15.29 10.34 -12.49 -0.13 -15.42 16 11 C 0.37 10.66 7.35 -158.23 -1.16 9.49 16 12 C -0.42 -11.79 9.35 -37.80 -0.35 -12.15 16 13 H 0.09 2.41 7.85 -52.49 -0.41 2.00 16 14 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 15 N -0.73 -19.73 11.41 55.55 0.63 -19.10 16 16 Si 0.91 19.29 29.56 -169.99 -5.02 14.26 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 N -0.48 -13.27 7.84 -12.49 -0.10 -13.37 16 21 C 0.10 2.33 10.14 -16.93 -0.17 2.15 16 22 C -0.13 -1.73 5.59 -26.73 -0.15 -1.88 16 23 C -0.13 -1.67 5.38 -26.73 -0.14 -1.81 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 26 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.83 6.51 -51.93 -0.34 0.49 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.08 6.53 -51.93 -0.34 0.74 16 33 H 0.38 5.65 6.89 -40.82 -0.28 5.37 16 34 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.27 6.63 8.29 -40.82 -0.34 6.30 16 36 H 0.13 2.64 6.34 -52.48 -0.33 2.30 16 37 H 0.07 1.12 7.81 -51.92 -0.41 0.72 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.67 7.87 -51.93 -0.41 0.26 16 40 H 0.08 1.12 7.60 -51.93 -0.39 0.72 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -31.07 321.53 -8.44 -39.52 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.82 Total: 6.52 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.27 Total: -0.11 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.18 Total: -60.02 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.07 -8.44 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168613910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.946 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds