Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00468 * 2 1 4 4 C 1.52994 * 109.47233 * 210.00104 * 3 2 1 5 5 C 1.52999 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47105 * 60.00160 * 5 4 3 7 7 N 1.46495 * 109.46960 * 59.99518 * 6 5 4 8 8 C 1.38803 * 119.99679 * 155.00359 * 7 6 5 9 9 C 1.40090 * 120.75929 * 180.02562 * 8 7 6 10 10 N 1.31660 * 119.13701 * 179.97438 * 9 8 7 11 11 C 1.33594 * 120.79493 * 359.97438 * 10 9 8 12 12 C 1.41144 * 119.17343 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99977 * 359.97438 * 12 11 10 14 14 C 1.40045 * 120.00031 * 180.02562 * 12 11 10 15 15 N 1.30730 * 120.00049 * 359.72571 * 14 12 11 16 16 Si 1.86800 * 120.00245 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47090 * 89.99791 * 16 14 12 18 18 H 1.48495 * 109.47520 * 210.00133 * 16 14 12 19 19 H 1.48507 * 109.46786 * 330.00091 * 16 14 12 20 20 N 1.33604 * 121.65774 * 0.27816 * 11 10 9 21 21 C 1.31665 * 120.78717 * 359.43912 * 20 11 10 22 22 C 1.53003 * 109.46505 * 300.00194 * 6 5 4 23 23 C 1.52999 * 109.47598 * 60.00107 * 22 6 5 24 24 H 1.08991 * 109.46983 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46860 * 300.00667 * 1 2 3 26 26 H 1.08999 * 109.46825 * 59.99624 * 1 2 3 27 27 H 1.09007 * 109.46606 * 330.00174 * 3 2 1 28 28 H 1.08998 * 109.47426 * 59.99817 * 4 3 2 29 29 H 1.08998 * 109.47409 * 299.99866 * 4 3 2 30 30 H 1.08998 * 109.47437 * 299.99918 * 5 4 3 31 31 H 1.09000 * 109.47204 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47005 * 180.02562 * 6 5 4 33 33 H 0.97001 * 120.00623 * 335.00816 * 7 6 5 34 34 H 1.07995 * 120.42708 * 359.95313 * 9 8 7 35 35 H 0.97000 * 120.00283 * 180.02562 * 15 14 12 36 36 H 1.08006 * 120.42947 * 180.27667 * 21 20 11 37 37 H 1.09011 * 109.46695 * 180.02562 * 22 6 5 38 38 H 1.08998 * 109.46916 * 299.99555 * 22 6 5 39 39 H 1.09000 * 109.47204 * 179.97438 * 23 22 6 40 40 H 1.08998 * 109.47136 * 59.99311 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 3.9810 2.6610 -0.7218 6 6 4.1885 3.1275 0.7206 7 7 5.0827 2.1951 1.4115 8 6 5.8285 2.6265 2.4997 9 6 6.6889 1.7487 3.1718 10 7 7.3818 2.1919 4.1999 11 6 7.2718 3.4609 4.6029 12 6 8.0310 3.8998 5.7088 13 1 8.6902 3.2125 6.2182 14 6 7.9287 5.2263 6.1463 15 7 7.1340 6.0593 5.5270 16 14 8.9340 5.8074 7.6095 17 1 10.2428 6.3257 7.1364 18 1 8.2003 6.8875 8.3166 19 1 9.1583 4.6709 8.5387 20 7 6.4575 4.3236 3.9885 21 6 5.7393 3.9499 2.9502 22 6 2.8398 3.1696 1.4418 23 6 2.2177 1.7718 1.4424 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.3450 1.9994 -0.5139 28 1 3.2112 0.9312 -1.7489 29 1 4.0242 0.5692 -0.2075 30 1 3.3157 3.3546 -1.2359 31 1 4.9421 2.6308 -1.2352 32 1 4.6313 4.1235 0.7202 33 1 5.1536 1.2764 1.1085 34 1 6.7824 0.7218 2.8510 35 1 7.0634 6.9782 5.8297 36 1 5.0862 4.6534 2.4551 37 1 2.9875 3.5024 2.4693 38 1 2.1745 3.8633 0.9277 39 1 1.2570 1.8019 1.9565 40 1 2.8830 1.0782 1.9564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168613910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -24.917724 kcal Electronic energy + Delta-G solvation = -21546.773968 eV Core-core repulsion = 18360.367864 eV Total energy + Delta-G solvation = -3186.406104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11374 -40.19512 -38.08773 -35.73752 -34.53781 -33.63450 -31.79708 -31.15901 -29.68117 -27.37475 -26.88085 -24.86637 -23.63177 -23.36930 -22.72745 -20.21666 -19.70636 -18.36333 -17.60968 -17.17148 -17.05585 -16.55620 -16.08483 -16.01833 -15.66454 -15.19337 -14.86597 -14.69969 -14.43582 -14.13640 -13.72392 -13.41328 -13.09398 -12.98911 -12.96853 -12.84401 -12.53740 -12.36408 -12.18784 -11.93003 -11.91687 -11.52490 -11.36828 -11.24624 -11.19417 -11.07494 -10.68874 -10.35285 -9.19387 -8.44396 -8.29001 -6.29589 0.91071 1.04908 1.43065 1.54538 1.58622 2.28130 2.77660 2.87206 2.92485 3.77072 3.79152 4.00137 4.01797 4.06727 4.11877 4.21982 4.26800 4.37354 4.39274 4.51671 4.53567 4.55056 4.59116 4.64789 4.78998 4.85470 4.95585 5.06808 5.10195 5.19723 5.22759 5.24503 5.32519 5.39446 5.43423 5.64098 6.26127 6.32842 6.58863 6.64229 6.82524 7.12020 7.36445 8.32921 8.53398 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037389 B = 0.003612 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.703325 B = 7750.486864 C = 7813.236646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.094 3.906 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.154 3.846 7 N -0.728 5.728 8 C 0.003 3.997 9 C 0.078 3.922 10 N -0.590 5.590 11 C 0.337 3.663 12 C -0.461 4.461 13 H 0.079 0.921 14 C 0.026 3.974 15 N -0.765 5.765 16 Si 0.993 3.007 17 H -0.262 1.262 18 H -0.264 1.264 19 H -0.260 1.260 20 N -0.505 5.505 21 C 0.076 3.924 22 C -0.128 4.128 23 C -0.129 4.129 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.158 0.842 35 H 0.278 0.722 36 H 0.146 0.854 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -4.702 -13.275 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.036 3.964 4 C -0.149 4.149 5 C -0.148 4.148 6 C 0.048 3.952 7 N -0.364 5.364 8 C -0.103 4.103 9 C -0.095 4.095 10 N -0.309 5.309 11 C 0.093 3.907 12 C -0.498 4.498 13 H 0.097 0.903 14 C -0.195 4.195 15 N -0.390 5.390 16 Si 0.813 3.187 17 H -0.187 1.187 18 H -0.189 1.189 19 H -0.184 1.184 20 N -0.222 5.222 21 C -0.099 4.099 22 C -0.167 4.167 23 C -0.167 4.167 24 H 0.112 0.888 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.175 0.825 35 H 0.088 0.912 36 H 0.163 0.837 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.048 -4.172 -12.528 17.875 hybrid contribution -0.303 -0.243 0.042 0.390 sum -12.351 -4.415 -12.486 18.109 Atomic orbital electron populations 1.22931 0.80040 1.03533 1.00594 1.87881 1.21025 1.28824 1.95146 1.22189 0.95317 0.84134 0.94739 1.21525 0.94809 0.97502 1.01079 1.21707 1.02186 0.96626 0.94299 1.20842 0.88983 0.93281 0.92082 1.43798 1.47558 1.12883 1.32142 1.19174 1.00260 0.95656 0.95244 1.22751 0.94356 0.99373 0.93018 1.68512 1.27628 1.17766 1.16965 1.20088 0.92154 0.84040 0.94430 1.19323 1.22686 0.96680 1.11140 0.90250 1.26874 0.96073 0.95870 1.00637 1.70222 1.28351 1.04714 1.35671 0.85056 0.78260 0.78460 0.76899 1.18674 1.18856 1.18421 1.69190 1.08475 1.36088 1.08467 1.23070 0.99067 0.92865 0.94911 1.21937 0.97333 0.96948 1.00517 1.21848 1.00257 0.96958 0.97646 0.88846 0.94066 0.92675 0.90526 0.89924 0.92254 0.88462 0.90416 0.91680 0.76869 0.82504 0.91151 0.83712 0.94174 0.89385 0.92402 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 113.37 1.23 1.60 16 2 O -0.41 -8.79 10.35 -148.98 -1.54 -10.33 16 3 C 0.09 1.78 2.61 30.59 0.08 1.86 16 4 C -0.11 -1.98 5.40 30.59 0.17 -1.82 16 5 C -0.11 -1.92 5.61 30.60 0.17 -1.75 16 6 C 0.15 3.81 2.49 45.00 0.11 3.92 16 7 N -0.73 -22.25 4.38 -317.68 -1.39 -23.64 16 8 C 0.00 0.14 6.70 38.94 0.26 0.41 16 9 C 0.08 3.61 11.20 85.17 0.95 4.56 16 10 N -0.59 -32.78 10.34 -193.42 -2.00 -34.78 16 11 C 0.34 20.25 7.35 134.95 0.99 21.25 16 12 C -0.46 -27.35 9.35 23.42 0.22 -27.13 16 13 H 0.08 4.61 7.85 -2.91 -0.02 4.58 16 14 C 0.03 1.42 5.50 85.30 0.47 1.89 16 15 N -0.76 -42.73 11.41 21.84 0.25 -42.48 16 16 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 N -0.51 -29.19 7.84 -193.42 -1.52 -30.70 16 21 C 0.08 3.66 10.14 85.17 0.86 4.53 16 22 C -0.13 -3.09 5.59 30.60 0.17 -2.92 16 23 C -0.13 -3.01 5.38 30.59 0.16 -2.85 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 0.60 7.87 -2.39 -0.02 0.58 16 26 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 27 H 0.08 1.18 7.79 -2.38 -0.02 1.16 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.21 6.51 -2.39 -0.02 1.19 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.77 6.53 -2.39 -0.02 1.76 16 33 H 0.40 10.83 6.89 -92.71 -0.64 10.20 16 34 H 0.16 5.98 8.06 -2.91 -0.02 5.96 16 35 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 36 H 0.15 6.15 6.34 -2.91 -0.02 6.13 16 37 H 0.04 1.23 7.81 -2.38 -0.02 1.21 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.31 7.87 -2.39 -0.02 1.29 16 40 H 0.05 1.42 7.60 -2.39 -0.02 1.40 16 Total: -1.00 -70.69 321.53 2.09 -68.61 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.41 Total: 27.29 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.85 Total: 3.55 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -4.66 Total: -131.60 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -1.54 Total: -10.33 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -70.69 2.09 -68.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168613910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.691 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds