Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47019 * 110.99492 * 2 1 4 4 C 1.53103 * 109.25542 * 177.60813 * 3 2 1 5 5 O 1.43016 * 109.25848 * 56.84278 * 4 3 2 6 6 C 1.43011 * 113.74132 * 301.33213 * 5 4 3 7 7 C 1.47012 * 111.00466 * 236.36258 * 2 1 3 8 8 H 1.09006 * 109.50645 * 62.41242 * 7 2 1 9 9 C 1.52999 * 109.50386 * 302.32835 * 7 2 1 10 10 N 1.46506 * 109.47094 * 305.20581 * 9 7 2 11 11 C 1.38369 * 119.99938 * 177.00591 * 10 9 7 12 12 C 1.39704 * 119.42903 * 0.27139 * 11 10 9 13 13 C 1.36567 * 119.49263 * 180.20763 * 12 11 10 14 14 C 1.41323 * 118.40487 * 359.53185 * 13 12 11 15 15 C 1.41197 * 120.57187 * 180.27576 * 14 13 12 16 16 H 1.08005 * 119.99765 * 334.21676 * 15 14 13 17 17 C 1.39869 * 120.00750 * 154.21695 * 15 14 13 18 18 N 1.30904 * 119.99463 * 340.92736 * 17 15 14 19 19 Si 1.86793 * 120.00514 * 160.92324 * 17 15 14 20 20 H 1.48500 * 109.47251 * 94.98347 * 19 17 15 21 21 H 1.48498 * 109.47255 * 214.98414 * 19 17 15 22 22 H 1.48499 * 109.47220 * 334.98583 * 19 17 15 23 23 C 1.40760 * 118.86137 * 0.24628 * 14 13 12 24 24 N 1.31485 * 120.36626 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.46978 * 189.65505 * 1 2 3 26 26 H 1.08998 * 109.47459 * 309.65705 * 1 2 3 27 27 H 1.09000 * 109.46973 * 69.66071 * 1 2 3 28 28 H 1.08998 * 109.50718 * 297.53459 * 3 2 1 29 29 H 1.08991 * 109.50823 * 57.67024 * 3 2 1 30 30 H 1.08998 * 109.50550 * 176.78447 * 4 3 2 31 31 H 1.09006 * 109.50136 * 296.86748 * 4 3 2 32 32 H 1.09007 * 109.50681 * 298.73486 * 6 5 4 33 33 H 1.09004 * 109.51014 * 178.60884 * 6 5 4 34 34 H 1.09003 * 109.46841 * 185.20597 * 9 7 2 35 35 H 1.08999 * 109.47489 * 65.20706 * 9 7 2 36 36 H 0.96996 * 119.99880 * 357.00832 * 10 9 7 37 37 H 1.08004 * 120.25616 * 0.02562 * 12 11 10 38 38 H 1.07994 * 120.79971 * 179.80488 * 13 12 11 39 39 H 0.96999 * 119.99984 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.81796 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 0.0603 5 8 4.0175 0.5575 -1.0402 6 6 3.5250 -0.7848 -1.0708 7 6 1.9960 -0.7602 -1.1426 8 1 1.6822 -0.2848 -2.0720 9 6 1.4591 -2.1921 -1.0948 10 7 1.7762 -2.7894 0.2049 11 6 1.3347 -4.0657 0.5060 12 6 0.5923 -4.7763 -0.4404 13 6 0.1522 -6.0345 -0.1430 14 6 0.4766 -6.5791 1.1201 15 6 0.0501 -7.8780 1.4731 16 1 -0.8308 -8.3008 1.0129 17 6 0.7684 -8.6172 2.4186 18 7 2.0054 -8.2942 2.6996 19 14 -0.0376 -10.0653 3.2804 20 1 0.3026 -11.3202 2.5629 21 1 0.4551 -10.1457 4.6790 22 1 -1.5111 -9.8814 3.2845 23 6 1.2327 -5.8046 2.0200 24 7 1.6287 -4.5959 1.6868 25 1 -0.3633 -1.0131 0.1724 26 1 -0.3634 0.6558 0.7911 27 1 -0.3633 0.3572 -0.9636 28 1 1.6827 1.8826 -0.9110 29 1 1.6132 1.9092 0.8681 30 1 3.9221 2.3400 0.0030 31 1 3.8384 0.8652 0.9969 32 1 3.8386 -1.3083 -0.1675 33 1 3.9223 -1.2985 -1.9463 34 1 1.9215 -2.7802 -1.8875 35 1 0.3782 -2.1798 -1.2349 36 1 2.2957 -2.2901 0.8543 37 1 0.3655 -4.3329 -1.3988 38 1 -0.4259 -6.6014 -0.8576 39 1 2.5037 -8.8070 3.3550 40 1 1.4897 -6.2058 2.9893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169650189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = 0.194332 kcal Electronic energy + Delta-G solvation = -21466.649192 eV Core-core repulsion = 18281.332028 eV Total energy + Delta-G solvation = -3185.317164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98611 -38.41049 -36.30286 -34.84988 -33.45954 -31.42437 -30.88799 -29.08519 -28.40098 -26.35534 -24.39865 -24.24693 -22.89161 -21.61170 -20.84206 -19.69423 -17.31246 -16.67244 -16.45271 -16.42689 -15.67008 -15.32106 -15.04144 -14.64242 -14.50749 -13.89244 -13.65253 -13.61148 -13.24334 -12.78235 -12.53942 -12.42268 -12.06682 -11.88154 -11.74410 -11.46962 -11.42831 -11.13785 -11.08980 -10.78196 -10.68047 -10.63590 -10.00923 -9.73797 -9.31995 -8.66658 -8.50225 -8.26023 -7.83187 -6.75297 -6.58675 -4.12686 2.85083 2.95614 3.12851 3.17393 3.30635 3.59029 3.73441 4.00494 4.24583 4.67020 4.73657 4.77059 4.80266 5.00528 5.11137 5.17038 5.38199 5.42657 5.45541 5.62236 5.66940 5.74242 5.76944 5.86961 5.93624 5.98441 6.15444 6.40613 6.71686 6.80074 6.83582 6.87342 7.00200 7.23484 7.39485 7.44706 7.61997 8.12180 8.25572 8.54173 8.64186 8.92044 8.99181 9.84726 10.29133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038877 B = 0.003483 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.052482 B = 8037.892748 C = 8194.751594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.530 5.530 3 C 0.018 3.982 4 C 0.062 3.938 5 O -0.387 6.387 6 C 0.068 3.932 7 C 0.040 3.960 8 H 0.058 0.942 9 C 0.152 3.848 10 N -0.733 5.733 11 C 0.279 3.721 12 C -0.203 4.203 13 C -0.156 4.156 14 C 0.027 3.973 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.804 5.804 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.276 1.276 22 H -0.262 1.262 23 C 0.083 3.917 24 N -0.525 5.525 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.280 0.720 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 14.933 -5.216 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.255 5.255 3 C -0.110 4.110 4 C -0.015 4.015 5 O -0.305 6.305 6 C -0.009 4.009 7 C -0.069 4.069 8 H 0.076 0.924 9 C 0.026 3.974 10 N -0.373 5.373 11 C 0.049 3.951 12 C -0.227 4.227 13 C -0.183 4.183 14 C 0.022 3.978 15 C -0.493 4.493 16 H 0.093 0.907 17 C -0.141 4.141 18 N -0.431 5.431 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.079 4.079 24 N -0.240 5.240 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.231 0.769 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.971 15.196 -4.389 15.847 hybrid contribution -1.174 -0.776 -0.584 1.524 sum -0.203 14.420 -4.973 15.255 Atomic orbital electron populations 1.22412 0.86512 1.03538 0.99803 1.62126 1.08614 1.12662 1.42130 1.22811 0.96548 0.90169 1.01484 1.22668 0.92211 0.96312 0.90351 1.87969 1.69995 1.24173 1.48410 1.22740 0.91383 0.83438 1.03334 1.22609 0.96580 0.95084 0.92629 0.92417 1.20963 0.99092 0.90035 0.87349 1.43480 1.63165 1.14259 1.16409 1.17819 0.98778 0.86760 0.91710 1.20590 1.06053 0.97155 0.98925 1.20909 1.05118 0.95650 0.96588 1.18340 0.94058 0.94372 0.91025 1.19261 1.10627 0.98915 1.20539 0.90683 1.25826 0.93948 0.98629 0.95679 1.69817 1.07758 1.38048 1.27497 0.86352 0.80732 0.80915 0.79003 1.19805 1.20104 1.18596 1.22670 0.98718 0.87142 0.99358 1.66764 1.24392 1.15239 1.17582 0.90077 0.91522 0.95797 0.94249 0.89654 0.88665 0.92046 0.91482 0.88239 0.92770 0.92906 0.76894 0.88785 0.88210 0.90924 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.01 60.07 0.54 0.83 16 2 N -0.53 -6.30 4.27 -234.58 -1.00 -7.30 16 3 C 0.02 0.18 5.65 -3.71 -0.02 0.16 16 4 C 0.06 0.62 7.01 37.21 0.26 0.88 16 5 O -0.39 -4.79 10.83 -35.23 -0.38 -5.17 16 6 C 0.07 0.83 6.20 37.20 0.23 1.06 16 7 C 0.04 0.48 2.24 -67.61 -0.15 0.33 16 8 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 9 C 0.15 2.16 3.89 -4.04 -0.02 2.14 16 10 N -0.73 -13.19 5.25 -60.35 -0.32 -13.51 16 11 C 0.28 6.33 7.64 -155.13 -1.19 5.15 16 12 C -0.20 -4.53 9.24 -39.64 -0.37 -4.90 16 13 C -0.16 -3.81 9.88 -39.01 -0.39 -4.20 16 14 C 0.03 0.73 5.56 -106.65 -0.59 0.13 16 15 C -0.46 -12.30 9.05 -37.85 -0.34 -12.64 16 16 H 0.08 1.92 7.91 -52.48 -0.42 1.50 16 17 C 0.08 1.91 5.10 -17.34 -0.09 1.82 16 18 N -0.80 -21.11 11.14 55.54 0.62 -20.49 16 19 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C 0.08 2.23 9.88 -16.75 -0.17 2.06 16 24 N -0.52 -13.41 10.37 -11.79 -0.12 -13.53 16 25 H 0.08 1.08 6.74 -51.93 -0.35 0.73 16 26 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 27 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.90 7.06 -51.93 -0.37 0.54 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 36 H 0.40 7.18 7.39 -40.82 -0.30 6.87 16 37 H 0.09 1.81 6.64 -52.48 -0.35 1.47 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.15 4.09 6.31 -52.49 -0.33 3.76 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -28.88 320.96 -9.47 -38.36 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.79 Total: 10.20 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.28 Total: -7.19 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.82 Total: -54.83 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.88 -9.47 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169650189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.551 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds