Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47019 * 110.99492 * 2 1 4 4 C 1.53103 * 109.25542 * 177.60813 * 3 2 1 5 5 O 1.43016 * 109.25848 * 56.84278 * 4 3 2 6 6 C 1.43011 * 113.74132 * 301.33213 * 5 4 3 7 7 C 1.47012 * 111.00466 * 236.36258 * 2 1 3 8 8 H 1.09006 * 109.50645 * 62.41242 * 7 2 1 9 9 C 1.52999 * 109.50386 * 302.32835 * 7 2 1 10 10 N 1.46506 * 109.47094 * 305.20581 * 9 7 2 11 11 C 1.38369 * 119.99938 * 177.00591 * 10 9 7 12 12 C 1.39704 * 119.42903 * 0.27139 * 11 10 9 13 13 C 1.36567 * 119.49263 * 180.20763 * 12 11 10 14 14 C 1.41323 * 118.40487 * 359.53185 * 13 12 11 15 15 C 1.41197 * 120.57187 * 180.27576 * 14 13 12 16 16 H 1.08005 * 119.99765 * 334.21676 * 15 14 13 17 17 C 1.39869 * 120.00750 * 154.21695 * 15 14 13 18 18 N 1.30904 * 119.99463 * 340.92736 * 17 15 14 19 19 Si 1.86793 * 120.00514 * 160.92324 * 17 15 14 20 20 H 1.48500 * 109.47251 * 94.98347 * 19 17 15 21 21 H 1.48498 * 109.47255 * 214.98414 * 19 17 15 22 22 H 1.48499 * 109.47220 * 334.98583 * 19 17 15 23 23 C 1.40760 * 118.86137 * 0.24628 * 14 13 12 24 24 N 1.31485 * 120.36626 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.46978 * 189.65505 * 1 2 3 26 26 H 1.08998 * 109.47459 * 309.65705 * 1 2 3 27 27 H 1.09000 * 109.46973 * 69.66071 * 1 2 3 28 28 H 1.08998 * 109.50718 * 297.53459 * 3 2 1 29 29 H 1.08991 * 109.50823 * 57.67024 * 3 2 1 30 30 H 1.08998 * 109.50550 * 176.78447 * 4 3 2 31 31 H 1.09006 * 109.50136 * 296.86748 * 4 3 2 32 32 H 1.09007 * 109.50681 * 298.73486 * 6 5 4 33 33 H 1.09004 * 109.51014 * 178.60884 * 6 5 4 34 34 H 1.09003 * 109.46841 * 185.20597 * 9 7 2 35 35 H 1.08999 * 109.47489 * 65.20706 * 9 7 2 36 36 H 0.96996 * 119.99880 * 357.00832 * 10 9 7 37 37 H 1.08004 * 120.25616 * 0.02562 * 12 11 10 38 38 H 1.07994 * 120.79971 * 179.80488 * 13 12 11 39 39 H 0.96999 * 119.99984 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.81796 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 0.0603 5 8 4.0175 0.5575 -1.0402 6 6 3.5250 -0.7848 -1.0708 7 6 1.9960 -0.7602 -1.1426 8 1 1.6822 -0.2848 -2.0720 9 6 1.4591 -2.1921 -1.0948 10 7 1.7762 -2.7894 0.2049 11 6 1.3347 -4.0657 0.5060 12 6 0.5923 -4.7763 -0.4404 13 6 0.1522 -6.0345 -0.1430 14 6 0.4766 -6.5791 1.1201 15 6 0.0501 -7.8780 1.4731 16 1 -0.8308 -8.3008 1.0129 17 6 0.7684 -8.6172 2.4186 18 7 2.0054 -8.2942 2.6996 19 14 -0.0376 -10.0653 3.2804 20 1 0.3026 -11.3202 2.5629 21 1 0.4551 -10.1457 4.6790 22 1 -1.5111 -9.8814 3.2845 23 6 1.2327 -5.8046 2.0200 24 7 1.6287 -4.5959 1.6868 25 1 -0.3633 -1.0131 0.1724 26 1 -0.3634 0.6558 0.7911 27 1 -0.3633 0.3572 -0.9636 28 1 1.6827 1.8826 -0.9110 29 1 1.6132 1.9092 0.8681 30 1 3.9221 2.3400 0.0030 31 1 3.8384 0.8652 0.9969 32 1 3.8386 -1.3083 -0.1675 33 1 3.9223 -1.2985 -1.9463 34 1 1.9215 -2.7802 -1.8875 35 1 0.3782 -2.1798 -1.2349 36 1 2.2957 -2.2901 0.8543 37 1 0.3655 -4.3329 -1.3988 38 1 -0.4259 -6.6014 -0.8576 39 1 2.5037 -8.8070 3.3550 40 1 1.4897 -6.2058 2.9893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169650189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = -19.301399 kcal Electronic energy + Delta-G solvation = -21467.494590 eV Core-core repulsion = 18281.332028 eV Total energy + Delta-G solvation = -3186.162562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.99069 -40.17241 -37.42925 -36.25739 -35.10945 -32.99747 -32.45262 -30.43076 -29.70693 -27.65445 -26.09923 -25.14146 -24.19048 -23.16937 -22.56155 -20.77575 -19.21732 -18.12590 -17.59176 -17.45012 -17.15745 -16.54526 -16.23308 -15.85858 -15.65917 -15.42910 -15.05223 -14.85326 -14.65089 -14.43001 -13.96140 -13.54135 -13.34339 -13.28672 -13.16018 -12.88359 -12.82004 -12.64337 -12.45173 -12.36302 -12.00263 -11.79219 -11.52224 -11.16186 -10.69921 -10.39106 -10.14019 -9.76260 -9.36882 -8.62620 -8.37205 -6.08721 0.98682 1.08257 1.42824 1.54837 1.60052 2.26962 2.58954 2.82537 2.86709 2.94945 3.70591 3.79899 3.84022 3.96569 4.11992 4.26990 4.30485 4.31299 4.54032 4.57700 4.61039 4.61589 4.69881 4.75132 4.77023 4.83476 4.87917 4.97663 5.03654 5.06155 5.30927 5.47838 5.55884 5.75943 5.92744 5.99113 6.12345 6.17958 6.40279 6.76124 6.81436 6.97403 7.21315 7.95430 8.43644 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038877 B = 0.003483 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.052482 B = 8037.892748 C = 8194.751594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.069 3.931 7 C 0.050 3.950 8 H 0.074 0.926 9 C 0.149 3.851 10 N -0.721 5.721 11 C 0.287 3.713 12 C -0.201 4.201 13 C -0.157 4.157 14 C -0.006 4.006 15 C -0.496 4.496 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.840 5.840 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.259 1.259 23 C 0.057 3.943 24 N -0.548 5.548 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.286 0.714 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 16.205 -6.415 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.274 5.274 3 C -0.106 4.106 4 C -0.020 4.020 5 O -0.317 6.317 6 C -0.008 4.008 7 C -0.059 4.059 8 H 0.091 0.909 9 C 0.024 3.976 10 N -0.360 5.360 11 C 0.054 3.946 12 C -0.225 4.225 13 C -0.184 4.184 14 C -0.011 4.011 15 C -0.528 4.528 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.467 5.467 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.183 1.183 23 C -0.102 4.102 24 N -0.265 5.265 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.399 16.498 -5.601 17.427 hybrid contribution -0.948 -0.941 -0.323 1.374 sum -0.549 15.557 -5.923 16.656 Atomic orbital electron populations 1.22342 0.86210 1.02356 1.00937 1.62111 1.09032 1.14051 1.42242 1.22840 0.96187 0.89102 1.02477 1.22860 0.92562 0.97161 0.89377 1.87959 1.70391 1.24136 1.49250 1.22711 0.91572 0.83586 1.02915 1.22482 0.96262 0.93690 0.93456 0.90876 1.21196 0.99665 0.91418 0.85347 1.43603 1.62075 1.12496 1.17844 1.18228 0.97482 0.88099 0.90794 1.20908 1.04960 0.96393 1.00231 1.21233 1.04602 0.96550 0.96044 1.18612 0.95253 0.95035 0.92198 1.19509 1.11326 0.99502 1.22439 0.90577 1.26676 0.94112 1.01373 0.95733 1.69886 1.09084 1.39591 1.28186 0.85220 0.79536 0.77248 0.77832 1.18920 1.19395 1.18275 1.22388 1.00578 0.88117 0.99124 1.66741 1.25486 1.15025 1.19210 0.92427 0.90549 0.94454 0.93533 0.88253 0.86221 0.92866 0.93327 0.87266 0.91801 0.92304 0.76912 0.85100 0.86599 0.90374 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.01 127.69 1.15 1.75 16 2 N -0.55 -11.81 4.27 -896.06 -3.83 -15.63 16 3 C 0.02 0.37 5.65 86.32 0.49 0.85 16 4 C 0.06 1.01 7.01 72.02 0.50 1.52 16 5 O -0.40 -9.04 10.83 -148.98 -1.61 -10.65 16 6 C 0.07 1.56 6.20 72.01 0.45 2.01 16 7 C 0.05 1.08 2.24 44.92 0.10 1.18 16 8 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 9 C 0.15 3.86 3.89 86.38 0.34 4.19 16 10 N -0.72 -25.07 5.25 -344.85 -1.81 -26.88 16 11 C 0.29 12.87 7.64 133.32 1.02 13.89 16 12 C -0.20 -8.68 9.24 22.23 0.21 -8.48 16 13 C -0.16 -7.66 9.88 22.64 0.22 -7.43 16 14 C -0.01 -0.32 5.56 -21.18 -0.12 -0.44 16 15 C -0.50 -27.14 9.05 23.39 0.21 -26.92 16 16 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 17 C 0.03 1.75 5.10 85.23 0.43 2.19 16 18 N -0.84 -45.52 11.14 21.82 0.24 -45.27 16 19 Si 0.98 39.09 29.60 68.60 2.03 41.12 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 23 C 0.06 3.21 9.88 85.36 0.84 4.05 16 24 N -0.55 -28.61 10.37 -191.21 -1.98 -30.60 16 25 H 0.06 1.44 6.74 -2.39 -0.02 1.42 16 26 H 0.08 1.38 8.04 -2.39 -0.02 1.36 16 27 H 0.04 0.65 8.12 -2.39 -0.02 0.63 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.05 1.27 7.06 -2.38 -0.02 1.25 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.58 8.03 -2.39 -0.02 1.57 16 35 H 0.06 1.51 6.43 -2.39 -0.02 1.49 16 36 H 0.40 14.05 7.39 -92.71 -0.68 13.37 16 37 H 0.13 4.63 6.64 -2.91 -0.02 4.61 16 38 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 39 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 40 H 0.13 7.48 6.31 -2.91 -0.02 7.46 16 Total: -1.00 -63.48 320.96 -0.76 -64.24 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.36 Total: 35.32 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.85 Total: -11.65 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -7.38 Total: -118.38 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.61 Total: -10.65 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -63.48 -0.76 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169650189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.941 kcal (2) G-P(sol) polarization free energy of solvation -63.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds