Wall clock time and date at job start Mon Mar 30 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47014 * 110.99706 * 2 1 4 4 C 1.53092 * 109.25830 * 177.60639 * 3 2 1 5 5 O 1.43020 * 109.25598 * 56.85077 * 4 3 2 6 6 C 1.43014 * 113.73959 * 301.33203 * 5 4 3 7 7 C 1.47014 * 110.99634 * 236.32156 * 2 1 3 8 8 H 1.09008 * 109.47354 * 62.43785 * 7 2 1 9 9 C 1.52996 * 109.54860 * 302.30448 * 7 2 1 10 10 N 1.46505 * 109.46904 * 306.20721 * 9 7 2 11 11 C 1.38819 * 119.99956 * 180.55138 * 10 9 7 12 12 C 1.39801 * 119.58605 * 359.72503 * 11 10 9 13 13 C 1.38594 * 119.49022 * 179.76917 * 12 11 10 14 14 C 1.38385 * 118.68191 * 0.49567 * 13 12 11 15 15 C 1.40561 * 119.15062 * 359.74878 * 14 13 12 16 16 C 1.41313 * 119.78541 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.40027 * 119.99951 * 179.97438 * 16 15 14 19 19 N 1.30748 * 119.99808 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99860 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47551 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46881 * 120.00364 * 20 18 16 23 23 H 1.48500 * 109.47018 * 240.00115 * 20 18 16 24 24 N 1.31961 * 119.58251 * 179.97438 * 11 10 9 25 25 H 1.08999 * 109.47344 * 66.25909 * 1 2 3 26 26 H 1.09004 * 109.46755 * 186.25629 * 1 2 3 27 27 H 1.08999 * 109.46955 * 306.25346 * 1 2 3 28 28 H 1.09003 * 109.50424 * 57.67160 * 3 2 1 29 29 H 1.08997 * 109.50690 * 297.54522 * 3 2 1 30 30 H 1.08998 * 109.51258 * 296.91591 * 4 3 2 31 31 H 1.09005 * 109.50868 * 176.78111 * 4 3 2 32 32 H 1.08996 * 109.50760 * 178.60827 * 6 5 4 33 33 H 1.09006 * 109.50146 * 298.69269 * 6 5 4 34 34 H 1.08997 * 109.47088 * 66.20136 * 9 7 2 35 35 H 1.08999 * 109.47403 * 186.21006 * 9 7 2 36 36 H 0.96999 * 120.00064 * 0.54400 * 10 9 7 37 37 H 1.08000 * 120.24986 * 359.97438 * 12 11 10 38 38 H 1.07999 * 120.66068 * 180.24529 * 13 12 11 39 39 H 1.08003 * 120.42934 * 179.72826 * 14 13 12 40 40 H 0.96994 * 119.99650 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0604 5 8 4.0174 0.5575 -1.0403 6 6 3.5249 -0.7848 -1.0710 7 6 1.9958 -0.7611 -1.1422 8 1 1.6821 -0.2856 -2.0715 9 6 1.4599 -2.1933 -1.0939 10 7 1.7566 -2.7819 0.2145 11 6 1.3746 -4.0875 0.4911 12 6 0.7020 -4.8310 -0.4833 13 6 0.3258 -6.1359 -0.2068 14 6 0.6209 -6.6625 1.0384 15 6 1.2947 -5.8630 1.9778 16 6 1.6032 -6.3874 3.2533 17 1 1.3210 -7.3993 3.5038 18 6 2.2747 -5.5950 4.1923 19 7 2.6159 -4.3697 3.8892 20 14 2.6831 -6.2884 5.8781 21 1 2.1934 -7.6873 5.9699 22 1 4.1542 -6.2653 6.0796 23 1 2.0271 -5.4641 6.9246 24 7 1.6465 -4.6095 1.6721 25 1 -0.3634 0.4137 -0.9407 26 1 -0.3633 -1.0216 0.1120 27 1 -0.3633 0.6077 0.8287 28 1 1.6133 1.9092 0.8682 29 1 1.6827 1.8826 -0.9109 30 1 3.8385 0.8645 0.9964 31 1 3.9221 2.3400 0.0029 32 1 3.9222 -1.2983 -1.9465 33 1 3.8392 -1.3084 -0.1681 34 1 0.3814 -2.1832 -1.2515 35 1 1.9358 -2.7859 -1.8751 36 1 2.2201 -2.2593 0.8876 37 1 0.4804 -4.3928 -1.4452 38 1 -0.1910 -6.7286 -0.9470 39 1 0.3369 -7.6748 1.2855 40 1 3.0814 -3.8210 4.5396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169654817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:10 Heat of formation + Delta-G solvation = -12.229568 kcal Electronic energy + Delta-G solvation = -21877.658429 eV Core-core repulsion = 18691.802524 eV Total energy + Delta-G solvation = -3185.855904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96213 -39.91948 -37.39922 -36.10516 -35.05124 -32.86037 -32.11031 -30.45248 -29.64184 -27.27055 -27.02299 -25.16133 -23.85397 -23.14202 -22.36318 -20.76669 -19.18571 -18.16021 -17.50140 -17.33165 -16.59426 -16.58919 -16.29011 -15.98839 -15.63470 -15.50561 -15.01878 -14.81012 -14.62782 -14.50144 -13.77498 -13.68039 -13.33011 -13.17116 -12.85100 -12.83166 -12.69884 -12.57208 -12.36827 -12.19918 -11.98614 -11.68781 -11.54548 -11.29373 -10.75760 -10.52204 -9.78724 -9.39328 -9.36181 -8.20195 -8.18787 -6.44577 1.09301 1.39307 1.42347 1.57342 1.58989 2.26695 2.58312 2.83104 2.94227 2.96504 3.69467 3.78683 3.94341 4.10488 4.11488 4.26083 4.29485 4.41523 4.51979 4.57987 4.58748 4.65781 4.73808 4.75206 4.83615 4.86247 4.97317 5.03194 5.03906 5.05000 5.16575 5.40768 5.75646 5.90782 5.98799 6.00750 6.09480 6.13743 6.27236 6.62170 6.89372 7.02197 7.29887 8.40040 8.55365 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.005102 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.115252 B = 5486.363002 C = 6427.823494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.552 5.552 3 C 0.023 3.977 4 C 0.057 3.943 5 O -0.397 6.397 6 C 0.070 3.930 7 C 0.051 3.949 8 H 0.076 0.924 9 C 0.149 3.851 10 N -0.718 5.718 11 C 0.397 3.603 12 C -0.368 4.368 13 C -0.030 4.030 14 C -0.347 4.347 15 C 0.260 3.740 16 C -0.473 4.473 17 H 0.084 0.916 18 C 0.026 3.974 19 N -0.749 5.749 20 Si 0.984 3.016 21 H -0.256 1.256 22 H -0.267 1.267 23 H -0.267 1.267 24 N -0.565 5.565 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.396 0.604 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 11.943 -7.370 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.278 5.278 3 C -0.105 4.105 4 C -0.020 4.020 5 O -0.316 6.316 6 C -0.007 4.007 7 C -0.058 4.058 8 H 0.094 0.906 9 C 0.024 3.976 10 N -0.354 5.354 11 C 0.156 3.844 12 C -0.394 4.394 13 C -0.054 4.054 14 C -0.370 4.370 15 C 0.133 3.867 16 C -0.505 4.505 17 H 0.102 0.898 18 C -0.195 4.195 19 N -0.371 5.371 20 Si 0.805 3.195 21 H -0.179 1.179 22 H -0.192 1.192 23 H -0.192 1.192 24 N -0.288 5.288 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.387 12.500 -6.606 14.143 hybrid contribution -0.696 -0.497 -0.141 0.867 sum -0.309 12.002 -6.746 13.772 Atomic orbital electron populations 1.22326 0.86200 1.02126 1.01055 1.62064 1.09074 1.14211 1.42456 1.22822 0.96120 0.88991 1.02519 1.22857 0.92646 0.97173 0.89277 1.87946 1.70411 1.24046 1.49152 1.22690 0.91671 0.83599 1.02736 1.22477 0.96182 0.93657 0.93471 0.90623 1.21212 0.99653 0.91565 0.85174 1.44132 1.65169 1.10103 1.15976 1.18989 0.89014 0.86310 0.90129 1.20941 1.19332 0.97685 1.01435 1.20986 0.94784 0.94451 0.95173 1.21668 1.16364 1.01423 0.97550 1.18669 0.87616 0.87189 0.93251 1.19940 1.33276 1.00220 0.97042 0.89776 1.26930 0.93928 0.94679 1.03997 1.70269 1.24445 1.07546 1.34862 0.85142 0.78576 0.79543 0.76286 1.17938 1.19222 1.19215 1.68199 1.29231 1.14081 1.17274 0.94172 0.92630 0.90742 0.88388 0.93224 0.93289 0.85966 0.87111 0.93869 0.92407 0.91514 0.76851 0.86444 0.85494 0.88253 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.09 127.69 1.16 1.88 16 2 N -0.55 -13.92 4.17 -896.05 -3.74 -17.66 16 3 C 0.02 0.46 5.66 86.31 0.49 0.95 16 4 C 0.06 1.20 7.01 72.01 0.50 1.70 16 5 O -0.40 -10.12 10.83 -148.98 -1.61 -11.74 16 6 C 0.07 1.82 6.20 72.01 0.45 2.27 16 7 C 0.05 1.26 2.25 44.92 0.10 1.36 16 8 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 9 C 0.15 4.39 3.85 86.38 0.33 4.72 16 10 N -0.72 -28.61 5.25 -344.98 -1.81 -30.42 16 11 C 0.40 19.52 7.65 133.42 1.02 20.54 16 12 C -0.37 -16.60 9.34 22.73 0.21 -16.39 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.35 -18.09 9.83 22.87 0.22 -17.86 16 15 C 0.26 15.13 6.55 40.18 0.26 15.39 16 16 C -0.47 -26.82 9.14 23.46 0.21 -26.60 16 17 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.39 5.50 85.29 0.47 1.86 16 19 N -0.75 -41.41 11.46 21.84 0.25 -41.16 16 20 Si 0.98 39.52 29.56 68.60 2.03 41.54 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 24 N -0.56 -32.36 7.89 -186.58 -1.47 -33.83 16 25 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 1.59 6.56 -2.38 -0.02 1.57 16 27 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.10 1.71 8.12 -2.39 -0.02 1.69 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.04 1.34 7.20 -2.38 -0.02 1.32 16 34 H 0.06 1.68 6.59 -2.39 -0.02 1.66 16 35 H 0.07 1.87 7.90 -2.39 -0.02 1.85 16 36 H 0.40 16.88 7.48 -92.71 -0.69 16.18 16 37 H 0.12 4.50 6.68 -2.91 -0.02 4.48 16 38 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.27 13.74 8.29 -92.71 -0.77 12.97 16 Total: -1.00 -66.49 322.43 -0.35 -66.84 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.35 Total: 37.74 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.66 Total: -11.31 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -6.77 Total: -123.07 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.61 Total: -11.74 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -66.49 -0.35 -66.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169654817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.607 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds