Wall clock time and date at job start Mon Mar 30 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47006 * 111.00563 * 2 1 4 4 C 1.53097 * 109.26109 * 182.39291 * 3 2 1 5 5 O 1.43015 * 109.25470 * 303.14858 * 4 3 2 6 6 C 1.43018 * 113.74045 * 58.67249 * 5 4 3 7 7 C 1.47016 * 110.99762 * 123.63892 * 2 1 3 8 8 H 1.09005 * 109.50339 * 297.53984 * 7 2 1 9 9 C 1.53000 * 109.50967 * 57.66522 * 7 2 1 10 10 N 1.46502 * 109.46734 * 54.32821 * 9 7 2 11 11 C 1.38820 * 120.00063 * 184.66992 * 10 9 7 12 12 C 1.39805 * 119.58383 * 359.72886 * 11 10 9 13 13 C 1.38593 * 119.49089 * 179.78633 * 12 11 10 14 14 C 1.38384 * 118.68096 * 0.48120 * 13 12 11 15 15 C 1.40557 * 119.14826 * 359.74490 * 14 13 12 16 16 C 1.41322 * 119.78168 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00054 * 354.68738 * 16 15 14 18 18 C 1.40029 * 119.99918 * 174.68491 * 16 15 14 19 19 N 1.30749 * 119.99615 * 5.32561 * 18 16 15 20 20 Si 1.86793 * 119.99980 * 185.32597 * 18 16 15 21 21 H 1.48498 * 109.47139 * 94.99737 * 20 18 16 22 22 H 1.48503 * 109.47046 * 214.99560 * 20 18 16 23 23 H 1.48501 * 109.47258 * 334.99799 * 20 18 16 24 24 N 1.31950 * 119.58822 * 180.02562 * 11 10 9 25 25 H 1.09000 * 109.46670 * 53.88605 * 1 2 3 26 26 H 1.08998 * 109.47198 * 293.88589 * 1 2 3 27 27 H 1.08998 * 109.47678 * 173.88696 * 1 2 3 28 28 H 1.09000 * 109.50528 * 302.32875 * 3 2 1 29 29 H 1.09001 * 109.50690 * 62.45276 * 3 2 1 30 30 H 1.08996 * 109.50959 * 63.08410 * 4 3 2 31 31 H 1.09001 * 109.50772 * 183.21890 * 4 3 2 32 32 H 1.09002 * 109.50312 * 61.25931 * 6 5 4 33 33 H 1.08997 * 109.51136 * 181.38831 * 6 5 4 34 34 H 1.08998 * 109.46949 * 174.32750 * 9 7 2 35 35 H 1.08998 * 109.47547 * 294.32795 * 9 7 2 36 36 H 0.96997 * 120.00318 * 4.67675 * 10 9 7 37 37 H 1.08000 * 120.25088 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.65644 * 180.22084 * 13 12 11 39 39 H 1.07999 * 120.42591 * 179.72386 * 14 13 12 40 40 H 0.97004 * 119.99739 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3262 -0.0603 5 8 4.0175 0.5572 1.0403 6 6 3.5249 -0.7851 1.0710 7 6 1.9958 -0.7603 1.1427 8 1 1.6827 -0.2843 2.0720 9 6 1.4587 -2.1922 1.0950 10 7 1.7661 -2.7857 -0.2087 11 6 1.2917 -4.0516 -0.5243 12 6 0.5261 -4.7546 0.4107 13 6 0.0497 -6.0164 0.0919 14 6 0.3576 -6.5490 -1.1477 15 6 1.1358 -5.7948 -2.0427 16 6 1.4577 -6.3255 -3.3123 17 1 1.1800 -7.3393 -3.5600 18 6 2.1367 -5.5367 -4.2491 19 7 2.5647 -4.3474 -3.9147 20 14 2.4311 -6.1837 -5.9765 21 1 1.3542 -5.6991 -6.8768 22 1 3.7448 -5.6979 -6.4699 23 1 2.4283 -7.6686 -5.9562 24 7 1.5739 -4.5786 -1.7006 25 1 -0.3633 0.6057 -0.8302 26 1 -0.3633 0.4161 0.9396 27 1 -0.3634 -1.0218 -0.1094 28 1 1.6135 1.9091 -0.8682 29 1 1.6828 1.8825 0.9110 30 1 3.8386 0.8641 -0.9964 31 1 3.9223 2.3396 -0.0029 32 1 3.8384 -1.3085 0.1678 33 1 3.9221 -1.2987 1.9465 34 1 1.9273 -2.7824 1.8825 35 1 0.3790 -2.1805 1.2433 36 1 2.3013 -2.2943 -0.8513 37 1 0.3051 -4.3165 1.3728 38 1 -0.5465 -6.5747 0.7986 39 1 0.0047 -7.5317 -1.4237 40 1 3.0354 -3.8011 -4.5635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169654818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:12 Heat of formation + Delta-G solvation = -12.232259 kcal Electronic energy + Delta-G solvation = -21885.757773 eV Core-core repulsion = 18699.901752 eV Total energy + Delta-G solvation = -3185.856021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96414 -39.92041 -37.39600 -36.10726 -35.05379 -32.85920 -32.11328 -30.45521 -29.63622 -27.26283 -27.03722 -25.16231 -23.84931 -23.14497 -22.36649 -20.76296 -19.18412 -18.17342 -17.48240 -17.32949 -16.59626 -16.59230 -16.30697 -15.98401 -15.63322 -15.52393 -15.00260 -14.80552 -14.62549 -14.49951 -13.78342 -13.67935 -13.32434 -13.17944 -12.85457 -12.83190 -12.70190 -12.56569 -12.38464 -12.20104 -11.98643 -11.70469 -11.54095 -11.27002 -10.74018 -10.53114 -9.78652 -9.38860 -9.35777 -8.20255 -8.19250 -6.44385 1.09806 1.39301 1.42245 1.56122 1.59720 2.26751 2.59033 2.82792 2.94053 2.95921 3.69545 3.78834 3.94331 4.09933 4.11268 4.25920 4.29354 4.41624 4.51639 4.57832 4.58680 4.66086 4.73079 4.75075 4.83834 4.86132 4.96992 5.03232 5.03903 5.04873 5.16714 5.40592 5.75720 5.91242 5.99022 6.00699 6.09509 6.13719 6.27081 6.62198 6.89223 7.01868 7.29495 8.39929 8.55267 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.005114 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.492329 B = 5474.386302 C = 6416.791972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.057 3.943 5 O -0.397 6.397 6 C 0.070 3.930 7 C 0.050 3.950 8 H 0.076 0.924 9 C 0.149 3.851 10 N -0.717 5.717 11 C 0.397 3.603 12 C -0.368 4.368 13 C -0.030 4.030 14 C -0.347 4.347 15 C 0.261 3.739 16 C -0.474 4.474 17 H 0.084 0.916 18 C 0.027 3.973 19 N -0.749 5.749 20 Si 0.984 3.016 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.256 1.256 24 N -0.565 5.565 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.044 0.956 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 11.888 7.440 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.277 5.277 3 C -0.105 4.105 4 C -0.019 4.019 5 O -0.315 6.315 6 C -0.007 4.007 7 C -0.058 4.058 8 H 0.094 0.906 9 C 0.024 3.976 10 N -0.353 5.353 11 C 0.156 3.844 12 C -0.394 4.394 13 C -0.054 4.054 14 C -0.370 4.370 15 C 0.133 3.867 16 C -0.506 4.506 17 H 0.102 0.898 18 C -0.195 4.195 19 N -0.371 5.371 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.180 1.180 24 N -0.288 5.288 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.588 12.414 6.707 14.123 hybrid contribution -0.807 -0.456 0.096 0.932 sum -0.219 11.959 6.803 13.760 Atomic orbital electron populations 1.22314 0.86270 1.02061 1.01011 1.62075 1.09023 1.14185 1.42440 1.22824 0.96167 0.89023 1.02477 1.22852 0.92597 0.97182 0.89287 1.87946 1.70397 1.24049 1.49133 1.22701 0.91618 0.83626 1.02771 1.22489 0.96236 0.93683 0.93439 0.90634 1.21223 0.99752 0.91469 0.85198 1.44120 1.59088 1.14498 1.17606 1.18977 0.88823 0.86474 0.90102 1.20940 1.16637 0.99743 1.02058 1.20986 0.95177 0.94316 0.94917 1.21669 1.14092 1.02814 0.98431 1.18661 0.87717 0.87266 0.93027 1.19914 1.33028 1.00260 0.97379 0.89774 1.26929 0.93468 0.94626 1.04474 1.70266 1.22863 1.08581 1.35436 0.85181 0.78379 0.79704 0.76288 1.19052 1.19316 1.17999 1.68187 1.29867 1.14395 1.16391 0.90838 0.94165 0.92695 0.88471 0.93242 0.93275 0.85971 0.93807 0.87010 0.91611 0.92232 0.76950 0.86457 0.85499 0.88242 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.09 127.69 1.16 1.91 16 2 N -0.55 -14.01 4.27 -896.08 -3.83 -17.84 16 3 C 0.02 0.46 5.66 86.32 0.49 0.95 16 4 C 0.06 1.20 7.01 72.01 0.50 1.71 16 5 O -0.40 -10.05 10.83 -148.98 -1.61 -11.66 16 6 C 0.07 1.79 6.20 72.01 0.45 2.24 16 7 C 0.05 1.24 2.25 44.93 0.10 1.35 16 8 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 9 C 0.15 4.37 3.91 86.38 0.34 4.71 16 10 N -0.72 -28.54 5.28 -344.98 -1.82 -30.36 16 11 C 0.40 19.53 7.65 133.42 1.02 20.55 16 12 C -0.37 -16.58 9.33 22.73 0.21 -16.37 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.14 16 14 C -0.35 -18.08 9.83 22.87 0.22 -17.86 16 15 C 0.26 15.15 6.55 40.18 0.26 15.42 16 16 C -0.47 -26.88 9.13 23.46 0.21 -26.66 16 17 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 18 C 0.03 1.42 5.49 85.29 0.47 1.89 16 19 N -0.75 -41.43 11.48 21.84 0.25 -41.18 16 20 Si 0.98 39.53 29.56 68.60 2.03 41.55 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 N -0.57 -32.38 7.91 -186.58 -1.48 -33.86 16 25 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 1.60 6.54 -2.39 -0.02 1.58 16 28 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.34 7.05 -2.39 -0.02 1.32 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.06 1.74 6.30 -2.39 -0.02 1.72 16 36 H 0.40 16.80 7.39 -92.71 -0.68 16.11 16 37 H 0.12 4.49 6.67 -2.91 -0.02 4.47 16 38 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.27 13.78 8.29 -92.71 -0.77 13.01 16 Total: -1.00 -66.48 322.26 -0.44 -66.92 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.36 Total: 37.74 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.67 Total: -11.31 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.88 Total: -123.24 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.61 Total: -11.66 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.55 kcal Total: -66.48 -0.44 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169654818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.686 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds