Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35042 * 126.39610 * 2 1 4 4 N 1.30500 * 108.70091 * 179.76575 * 3 2 1 5 5 C 1.34137 * 109.25269 * 0.38553 * 4 3 2 6 6 C 1.50695 * 125.98856 * 179.87679 * 5 4 3 7 7 C 1.50706 * 109.47565 * 304.69599 * 6 5 4 8 8 O 1.21286 * 119.99443 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00177 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99998 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.41265 * 324.86982 * 10 9 7 12 12 C 1.52963 * 109.34894 * 84.68562 * 10 9 7 13 13 C 1.53236 * 109.40035 * 183.66992 * 12 10 9 14 14 C 1.51268 * 108.53762 * 305.37197 * 13 12 10 15 15 C 1.37877 * 120.85152 * 231.34986 * 14 13 12 16 16 N 1.31515 * 119.99892 * 0.02562 * 15 14 13 17 17 Si 1.86798 * 120.00198 * 179.97438 * 15 14 13 18 18 H 1.48502 * 109.46974 * 89.99812 * 17 15 14 19 19 H 1.48499 * 109.47218 * 210.00245 * 17 15 14 20 20 H 1.48498 * 109.46819 * 330.00226 * 17 15 14 21 21 C 1.51297 * 118.30526 * 51.34945 * 14 13 12 22 22 C 1.52953 * 109.41547 * 205.00098 * 10 9 7 23 23 C 1.34666 * 108.01773 * 359.61840 * 5 4 3 24 24 H 1.09001 * 109.47142 * 269.99348 * 1 2 3 25 25 H 1.09000 * 109.47588 * 29.99614 * 1 2 3 26 26 H 1.08996 * 109.47179 * 149.99962 * 1 2 3 27 27 H 1.08001 * 125.64961 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47303 * 184.69003 * 6 5 4 29 29 H 1.09001 * 109.46828 * 64.69142 * 6 5 4 30 30 H 0.97003 * 119.99968 * 0.02562 * 9 7 6 31 31 H 1.08994 * 109.48627 * 303.64728 * 12 10 9 32 32 H 1.08994 * 109.48374 * 63.67699 * 12 10 9 33 33 H 1.08999 * 109.62901 * 65.09097 * 13 12 10 34 34 H 1.09004 * 109.61975 * 185.66003 * 13 12 10 35 35 H 0.97001 * 120.00351 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.64332 * 188.94879 * 21 14 13 37 37 H 1.08992 * 109.62506 * 68.36190 * 21 14 13 38 38 H 1.09002 * 109.48451 * 296.35150 * 22 10 9 39 39 H 1.08999 * 109.48225 * 56.38039 * 22 10 9 40 40 H 1.08002 * 126.58624 * 180.24627 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0051 5 6 3.5460 -0.6505 -0.0001 6 6 4.7890 -1.5025 0.0005 7 6 5.6644 -1.1150 -1.1634 8 8 5.3132 -0.2339 -1.9192 9 7 6.8374 -1.7474 -1.3642 10 6 7.6882 -1.3710 -2.4960 11 1 7.0617 -1.0978 -3.3450 12 6 8.5580 -0.1764 -2.1009 13 6 9.3815 0.2761 -3.3114 14 6 10.1560 -0.9120 -3.8375 15 6 11.5151 -0.8303 -4.0541 16 7 12.1549 0.2909 -3.8025 17 14 12.4482 -2.3124 -4.7037 18 1 12.4605 -2.2779 -6.1883 19 1 13.8434 -2.2804 -4.1962 20 1 11.7824 -3.5573 -4.2431 21 6 9.4011 -2.1924 -4.1198 22 6 8.5769 -2.5551 -2.8799 23 6 2.2772 -1.1017 -0.0001 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.9334 2.1144 0.0004 28 1 4.5099 -2.5524 -0.0885 29 1 5.3341 -1.3492 0.9319 30 1 7.1181 -2.4523 -0.7599 31 1 7.9210 0.6429 -1.7679 32 1 9.2290 -0.4669 -1.2925 33 1 8.7151 0.6517 -4.0878 34 1 10.0752 1.0608 -3.0094 35 1 13.1110 0.3486 -3.9553 36 1 10.1072 -2.9938 -4.3372 37 1 8.7365 -2.0454 -4.9711 38 1 9.2476 -2.7894 -2.0533 39 1 7.9532 -3.4218 -3.0988 40 1 1.9613 -2.1345 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177852395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = 12.372502 kcal Electronic energy + Delta-G solvation = -21167.063230 eV Core-core repulsion = 17982.274151 eV Total energy + Delta-G solvation = -3184.789079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07303 -39.17563 -36.61500 -34.30609 -33.49772 -31.81591 -31.04102 -29.52208 -28.50095 -27.20001 -25.96591 -22.20588 -21.55030 -21.29538 -20.55600 -19.63164 -19.21965 -17.16400 -16.66016 -15.95293 -15.64098 -15.36417 -14.91535 -14.38944 -14.33806 -13.84705 -13.44541 -13.11260 -13.04647 -12.88366 -12.77410 -12.60782 -12.24009 -12.06957 -11.74620 -11.46069 -10.92712 -10.69190 -10.68135 -10.18247 -9.86235 -9.81928 -9.55112 -9.44002 -9.32265 -8.91954 -8.69878 -8.42385 -8.35345 -8.10909 -6.02597 -3.93681 1.98129 2.68702 3.13405 3.23347 3.30762 3.38094 3.38993 3.88296 4.41486 4.42782 4.53991 4.76880 4.77239 5.01639 5.06855 5.21417 5.25242 5.42120 5.57911 5.80775 5.84544 6.00580 6.16475 6.28601 6.58756 6.66101 6.69012 6.81684 6.91206 6.98594 7.10219 7.12930 7.23220 7.39306 7.48661 7.72581 7.87237 7.95272 8.13565 8.16760 8.48036 8.86300 9.05141 9.60926 11.06976 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047774 B = 0.003294 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.949393 B = 8498.397462 C = 8793.171946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.468 5.468 3 C 0.178 3.822 4 N -0.461 5.461 5 C 0.025 3.975 6 C -0.057 4.057 7 C 0.510 3.490 8 O -0.523 6.523 9 N -0.731 5.731 10 C 0.156 3.844 11 H 0.075 0.925 12 C -0.113 4.113 13 C 0.011 3.989 14 C -0.486 4.486 15 C 0.074 3.926 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.265 1.265 21 C -0.018 4.018 22 C -0.112 4.112 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.203 0.797 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.391 0.609 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.005 0.995 34 H 0.057 0.943 35 H 0.263 0.737 36 H 0.037 0.963 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.072 -5.759 10.098 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.152 5.152 3 C -0.104 4.104 4 N -0.179 5.179 5 C -0.105 4.105 6 C -0.098 4.098 7 C 0.294 3.706 8 O -0.398 6.398 9 N -0.382 5.382 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.152 4.152 13 C -0.026 4.026 14 C -0.506 4.506 15 C -0.128 4.128 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.190 1.190 21 C -0.056 4.056 22 C -0.150 4.150 23 C -0.191 4.191 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.219 0.781 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.224 0.776 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.620 -4.494 9.537 23.159 hybrid contribution -0.081 -1.589 0.008 1.591 sum -20.701 -6.083 9.545 23.594 Atomic orbital electron populations 1.21991 0.76916 1.04580 1.03271 1.45381 1.07409 1.07072 1.55353 1.25018 0.85411 0.93538 1.06446 1.70203 1.18906 1.11364 1.17381 1.19942 0.92683 0.90792 1.07103 1.19919 0.92443 0.98575 0.98887 1.20308 0.81645 0.82352 0.86256 1.90721 1.72697 1.29851 1.46567 1.46377 1.20694 1.39538 1.31555 1.20975 0.90526 0.95854 0.87308 0.90706 1.21942 0.97078 0.95552 1.00656 1.19351 0.94476 0.96972 0.91847 1.20088 0.92147 0.95863 1.42452 1.24861 0.96977 0.95907 0.95045 1.69850 1.09161 1.25722 1.48082 0.86687 0.78691 0.83738 0.79361 1.20474 1.21716 1.18987 1.19788 0.95878 0.96977 0.92974 1.21833 0.97324 0.94865 1.00980 1.22326 0.90710 0.92499 1.13534 0.90740 0.89527 0.89866 0.78066 0.88292 0.88150 0.77636 0.94577 0.93396 0.97687 0.92438 0.92665 0.94481 0.96316 0.92629 0.94562 0.81088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.18 59.85 0.67 1.02 16 2 N -0.47 -4.60 3.15 -126.00 -0.40 -4.99 16 3 C 0.18 2.17 12.56 -90.38 -1.14 1.03 16 4 N -0.46 -7.59 10.64 -10.87 -0.12 -7.70 16 5 C 0.02 0.36 5.86 -82.85 -0.49 -0.13 16 6 C -0.06 -0.73 6.26 -29.03 -0.18 -0.91 16 7 C 0.51 8.95 7.78 -10.98 -0.09 8.86 16 8 O -0.52 -11.77 15.24 5.55 0.08 -11.69 16 9 N -0.73 -12.22 5.07 -53.85 -0.27 -12.49 16 10 C 0.16 3.24 2.35 -67.97 -0.16 3.08 16 11 H 0.07 1.73 7.58 -51.93 -0.39 1.34 16 12 C -0.11 -2.65 5.50 -26.63 -0.15 -2.80 16 13 C 0.01 0.31 5.97 -27.48 -0.16 0.14 16 14 C -0.49 -13.17 5.51 -98.91 -0.55 -13.71 16 15 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 16 N -0.89 -26.29 12.73 55.43 0.71 -25.58 16 17 Si 0.89 21.21 27.53 -169.99 -4.68 16.53 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.26 -6.02 6.10 56.52 0.35 -5.68 16 21 C -0.02 -0.43 5.59 -27.47 -0.15 -0.58 16 22 C -0.11 -2.24 5.40 -26.63 -0.14 -2.39 16 23 C -0.06 -0.64 11.46 -16.56 -0.19 -0.83 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.39 5.14 8.60 -40.82 -0.35 4.79 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.06 1.67 7.07 -51.93 -0.37 1.30 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.04 0.85 4.60 -51.93 -0.24 0.62 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -36.46 327.39 -8.60 -45.05 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.04 Total: 1.18 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.82 Total: -5.24 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.08 Total: -50.77 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.68 Total: 16.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.46 -8.60 -45.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177852395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.427 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds