Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35042 * 126.39610 * 2 1 4 4 N 1.30500 * 108.70091 * 179.76575 * 3 2 1 5 5 C 1.34137 * 109.25269 * 0.38553 * 4 3 2 6 6 C 1.50695 * 125.98856 * 179.87679 * 5 4 3 7 7 C 1.50706 * 109.47565 * 304.69599 * 6 5 4 8 8 O 1.21286 * 119.99443 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00177 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99998 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.41265 * 324.86982 * 10 9 7 12 12 C 1.52963 * 109.34894 * 84.68562 * 10 9 7 13 13 C 1.53236 * 109.40035 * 183.66992 * 12 10 9 14 14 C 1.51268 * 108.53762 * 305.37197 * 13 12 10 15 15 C 1.37877 * 120.85152 * 231.34986 * 14 13 12 16 16 N 1.31515 * 119.99892 * 0.02562 * 15 14 13 17 17 Si 1.86798 * 120.00198 * 179.97438 * 15 14 13 18 18 H 1.48502 * 109.46974 * 89.99812 * 17 15 14 19 19 H 1.48499 * 109.47218 * 210.00245 * 17 15 14 20 20 H 1.48498 * 109.46819 * 330.00226 * 17 15 14 21 21 C 1.51297 * 118.30526 * 51.34945 * 14 13 12 22 22 C 1.52953 * 109.41547 * 205.00098 * 10 9 7 23 23 C 1.34666 * 108.01773 * 359.61840 * 5 4 3 24 24 H 1.09001 * 109.47142 * 269.99348 * 1 2 3 25 25 H 1.09000 * 109.47588 * 29.99614 * 1 2 3 26 26 H 1.08996 * 109.47179 * 149.99962 * 1 2 3 27 27 H 1.08001 * 125.64961 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47303 * 184.69003 * 6 5 4 29 29 H 1.09001 * 109.46828 * 64.69142 * 6 5 4 30 30 H 0.97003 * 119.99968 * 0.02562 * 9 7 6 31 31 H 1.08994 * 109.48627 * 303.64728 * 12 10 9 32 32 H 1.08994 * 109.48374 * 63.67699 * 12 10 9 33 33 H 1.08999 * 109.62901 * 65.09097 * 13 12 10 34 34 H 1.09004 * 109.61975 * 185.66003 * 13 12 10 35 35 H 0.97001 * 120.00351 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.64332 * 188.94879 * 21 14 13 37 37 H 1.08992 * 109.62506 * 68.36190 * 21 14 13 38 38 H 1.09002 * 109.48451 * 296.35150 * 22 10 9 39 39 H 1.08999 * 109.48225 * 56.38039 * 22 10 9 40 40 H 1.08002 * 126.58624 * 180.24627 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0051 5 6 3.5460 -0.6505 -0.0001 6 6 4.7890 -1.5025 0.0005 7 6 5.6644 -1.1150 -1.1634 8 8 5.3132 -0.2339 -1.9192 9 7 6.8374 -1.7474 -1.3642 10 6 7.6882 -1.3710 -2.4960 11 1 7.0617 -1.0978 -3.3450 12 6 8.5580 -0.1764 -2.1009 13 6 9.3815 0.2761 -3.3114 14 6 10.1560 -0.9120 -3.8375 15 6 11.5151 -0.8303 -4.0541 16 7 12.1549 0.2909 -3.8025 17 14 12.4482 -2.3124 -4.7037 18 1 12.4605 -2.2779 -6.1883 19 1 13.8434 -2.2804 -4.1962 20 1 11.7824 -3.5573 -4.2431 21 6 9.4011 -2.1924 -4.1198 22 6 8.5769 -2.5551 -2.8799 23 6 2.2772 -1.1017 -0.0001 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.9334 2.1144 0.0004 28 1 4.5099 -2.5524 -0.0885 29 1 5.3341 -1.3492 0.9319 30 1 7.1181 -2.4523 -0.7599 31 1 7.9210 0.6429 -1.7679 32 1 9.2290 -0.4669 -1.2925 33 1 8.7151 0.6517 -4.0878 34 1 10.0752 1.0608 -3.0094 35 1 13.1110 0.3486 -3.9553 36 1 10.1072 -2.9938 -4.3372 37 1 8.7365 -2.0454 -4.9711 38 1 9.2476 -2.7894 -2.0533 39 1 7.9532 -3.4218 -3.0988 40 1 1.9613 -2.1345 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177852395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = -12.467825 kcal Electronic energy + Delta-G solvation = -21168.140387 eV Core-core repulsion = 17982.274151 eV Total energy + Delta-G solvation = -3185.866236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.89951 -40.64877 -38.37047 -35.30869 -35.04481 -33.47705 -32.26077 -31.44934 -29.59326 -28.56179 -26.87686 -24.00729 -23.44260 -22.16009 -21.75123 -21.28436 -20.58184 -18.30806 -17.86180 -17.58546 -16.87315 -16.44703 -16.35388 -16.06200 -15.17532 -15.08965 -14.86542 -14.69247 -14.47643 -14.10484 -13.93397 -13.79629 -13.49767 -13.38009 -13.21848 -12.92331 -12.78236 -12.59872 -12.52911 -11.93493 -11.81834 -11.30216 -11.03363 -10.81306 -10.68094 -10.61782 -10.45664 -10.36805 -9.77809 -9.23574 -8.14517 -6.11414 1.18210 1.43538 1.43842 1.54117 1.89016 2.03778 2.15388 2.43364 2.61018 3.13302 3.68050 3.97632 4.02760 4.12391 4.22114 4.26072 4.39829 4.49747 4.52298 4.53400 4.70869 4.72279 4.75659 4.91499 4.97298 5.02034 5.06112 5.22231 5.25369 5.27151 5.39507 5.56796 5.59528 5.74543 5.79358 5.82898 5.85834 6.35180 6.39788 6.84093 6.94668 7.30771 7.46783 7.55207 8.97176 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047774 B = 0.003294 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.949393 B = 8498.397462 C = 8793.171946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.463 5.463 3 C 0.165 3.835 4 N -0.527 5.527 5 C -0.023 4.023 6 C -0.045 4.045 7 C 0.504 3.496 8 O -0.580 6.580 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.047 0.953 12 C -0.100 4.100 13 C 0.009 3.991 14 C -0.500 4.500 15 C 0.016 3.984 16 N -0.937 5.937 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.237 1.237 21 C -0.022 4.022 22 C -0.102 4.102 23 C -0.043 4.043 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.225 0.775 28 H 0.144 0.856 29 H 0.114 0.886 30 H 0.413 0.587 31 H 0.018 0.982 32 H 0.048 0.952 33 H -0.015 1.015 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.049 0.951 37 H 0.016 0.984 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.159 -9.363 11.106 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.146 5.146 3 C -0.118 4.118 4 N -0.245 5.245 5 C -0.152 4.152 6 C -0.085 4.085 7 C 0.292 3.708 8 O -0.458 6.458 9 N -0.369 5.369 10 C 0.064 3.936 11 H 0.065 0.935 12 C -0.139 4.139 13 C -0.029 4.029 14 C -0.520 4.520 15 C -0.182 4.182 16 N -0.577 5.577 17 Si 0.776 3.224 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.160 1.160 21 C -0.060 4.060 22 C -0.140 4.140 23 C -0.177 4.177 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.242 0.758 28 H 0.162 0.838 29 H 0.132 0.868 30 H 0.250 0.750 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.003 0.997 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -22.755 -8.143 10.584 26.384 hybrid contribution 0.449 -0.334 -0.307 0.638 sum -22.306 -8.477 10.277 25.982 Atomic orbital electron populations 1.22348 0.73791 1.06152 1.04974 1.45675 1.09234 1.06110 1.53550 1.25436 0.85066 0.95137 1.06142 1.70103 1.21582 1.13238 1.19622 1.20361 0.94514 0.90553 1.09793 1.19965 0.91257 1.00746 0.96565 1.21280 0.81699 0.81082 0.86751 1.90699 1.73936 1.32310 1.48885 1.46101 1.20069 1.39983 1.30774 1.20529 0.90179 0.95070 0.87851 0.93462 1.21740 0.96753 0.96553 0.98869 1.19290 0.94001 0.96775 0.92835 1.20649 0.92654 0.97141 1.41517 1.25784 0.98160 0.98782 0.95469 1.70021 1.09385 1.28241 1.50078 0.85664 0.77114 0.81064 0.78573 1.20293 1.21972 1.16048 1.19817 0.96190 0.95359 0.94624 1.21700 0.97319 0.95425 0.99550 1.22870 0.89805 0.94186 1.10813 0.88912 0.88172 0.88202 0.75837 0.83814 0.86814 0.74991 0.96317 0.93299 0.99692 0.95957 0.92817 0.93298 0.96507 0.91612 0.90738 0.77365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.18 127.77 1.43 1.85 16 2 N -0.46 -8.06 3.15 -552.54 -1.74 -9.80 16 3 C 0.16 3.92 12.56 180.26 2.26 6.19 16 4 N -0.53 -17.52 10.64 -188.32 -2.00 -19.52 16 5 C -0.02 -0.63 5.86 41.39 0.24 -0.39 16 6 C -0.04 -1.04 6.26 29.10 0.18 -0.86 16 7 C 0.50 17.29 7.78 87.66 0.68 17.97 16 8 O -0.58 -26.73 15.24 -3.05 -0.05 -26.78 16 9 N -0.72 -22.67 5.07 -442.66 -2.24 -24.91 16 10 C 0.17 6.88 2.35 44.96 0.11 6.98 16 11 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 12 C -0.10 -4.83 5.50 30.66 0.17 -4.66 16 13 C 0.01 0.51 5.97 30.11 0.18 0.69 16 14 C -0.50 -27.42 5.51 -16.16 -0.09 -27.51 16 15 C 0.02 0.88 5.46 84.65 0.46 1.34 16 16 N -0.94 -57.30 12.73 21.45 0.27 -57.03 16 17 Si 0.95 43.07 27.53 68.60 1.89 44.96 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.24 -9.60 6.10 99.48 0.61 -8.99 16 21 C -0.02 -0.99 5.59 30.12 0.17 -0.82 16 22 C -0.10 -3.80 5.40 30.66 0.17 -3.63 16 23 C -0.04 -0.82 11.46 83.09 0.95 0.13 16 24 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 27 H 0.23 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.14 1.94 8.11 -2.39 -0.02 1.92 16 29 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.41 9.44 8.60 -92.71 -0.80 8.64 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.02 1.36 7.07 -2.38 -0.02 1.35 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.05 2.09 4.60 -2.39 -0.01 2.08 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -85.08 327.39 3.19 -81.89 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.15 Total: 13.91 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 6.91 Total: -2.72 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -5.72 Total: -111.26 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.89 Total: 44.96 kcal Total: -85.08 3.19 -81.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177852395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.423 kcal (2) G-P(sol) polarization free energy of solvation -85.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds