Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.38887 * 111.00120 * 123.95327 * 2 1 3 5 5 C 1.39198 * 120.60916 * 299.71838 * 4 2 1 6 6 N 1.31569 * 120.76032 * 179.74740 * 5 4 2 7 7 C 1.31941 * 122.17916 * 0.54934 * 6 5 4 8 8 C 1.37916 * 121.13580 * 359.72346 * 7 6 5 9 9 C 1.39980 * 119.09442 * 359.97438 * 8 7 6 10 10 C 1.47729 * 120.98252 * 180.02562 * 9 8 7 11 11 O 1.21562 * 120.00324 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99796 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00112 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47258 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47045 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46813 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00521 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00165 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00132 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47097 * 59.99748 * 20 18 16 22 22 H 1.48499 * 109.47237 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47068 * 300.00081 * 20 18 16 24 24 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 25 25 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 26 26 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 27 27 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 28 28 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 30 30 H 1.08003 * 119.61710 * 0.02562 * 5 4 2 31 31 H 1.08004 * 119.43107 * 179.74332 * 7 6 5 32 32 H 1.08005 * 120.45621 * 180.02562 * 8 7 6 33 33 H 0.97001 * 120.00222 * 359.97438 * 12 10 9 34 34 H 1.08994 * 109.47095 * 300.00183 * 13 12 10 35 35 H 1.09003 * 109.46656 * 59.99869 * 13 12 10 36 36 H 1.09002 * 109.47100 * 299.99852 * 14 13 12 37 37 H 1.08996 * 109.47103 * 59.99732 * 14 13 12 38 38 H 1.08994 * 109.47184 * 300.00135 * 15 14 13 39 39 H 1.09003 * 109.46780 * 59.99951 * 15 14 13 40 40 H 0.97002 * 120.00347 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9668 -0.7242 1.0755 5 6 1.6663 -0.3496 2.3821 6 7 2.1322 -1.0363 3.4030 7 6 2.9055 -2.0935 3.2445 8 6 3.2604 -2.5354 1.9872 9 6 2.7876 -1.8456 0.8647 10 6 3.1413 -2.2828 -0.5014 11 8 2.7204 -1.6708 -1.4636 12 7 3.9307 -3.3604 -0.6808 13 6 4.2819 -3.7938 -2.0354 14 6 5.1806 -5.0297 -1.9586 15 6 5.5479 -5.4819 -3.3734 16 6 6.4335 -6.6988 -3.2977 17 1 6.7074 -7.1085 -2.3367 18 6 6.8951 -7.2886 -4.4553 19 7 6.5620 -6.7895 -5.6256 20 14 7.9935 -8.7966 -4.3615 21 1 7.2725 -9.8915 -3.6638 22 1 8.3499 -9.2356 -5.7347 23 1 9.2306 -8.4620 -3.6115 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 -1.0253 -0.0709 27 1 1.6459 1.8948 0.8900 28 1 3.0850 1.3425 -0.0005 29 1 1.6459 1.8949 -0.8899 30 1 1.0399 0.5121 2.5596 31 1 3.2666 -2.6222 4.1144 32 1 3.8937 -3.4024 1.8701 33 1 4.2669 -3.8487 0.0870 34 1 3.3734 -4.0384 -2.5857 35 1 4.8119 -2.9908 -2.5477 36 1 6.0891 -4.7847 -1.4085 37 1 4.6510 -5.8327 -1.4461 38 1 4.6396 -5.7267 -3.9239 39 1 6.0777 -4.6786 -3.8855 40 1 6.8864 -7.2046 -6.4401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198176868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = -15.075915 kcal Electronic energy + Delta-G solvation = -20783.483308 eV Core-core repulsion = 17597.503977 eV Total energy + Delta-G solvation = -3185.979331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91400 -40.09614 -38.23596 -36.88134 -35.20810 -33.90607 -32.61620 -31.26046 -28.72752 -28.57160 -26.21544 -25.80602 -24.56187 -22.62202 -22.24873 -21.58910 -19.13517 -18.49783 -17.89448 -17.44982 -16.75167 -16.63009 -16.37228 -16.17933 -16.15601 -15.32185 -15.24419 -14.82883 -14.62009 -14.50977 -14.17114 -13.78486 -13.57302 -13.48244 -13.24298 -12.72029 -12.70571 -12.65104 -12.54403 -12.39063 -11.65792 -11.59813 -11.27413 -11.17832 -10.90196 -10.82784 -10.53814 -10.08024 -10.01464 -9.21332 -8.18447 -6.30095 -0.37414 -0.05495 1.42608 1.45622 1.53418 1.92352 2.08776 2.43404 2.74662 2.76074 3.15315 3.42864 3.58835 3.74783 3.87179 4.09807 4.17172 4.22702 4.31374 4.33389 4.50827 4.53804 4.55321 4.56547 4.75147 4.89142 4.92348 4.95472 4.96288 5.02279 5.18142 5.42193 5.45611 5.53543 5.71867 5.85179 5.90326 6.21285 6.23325 6.57807 6.81944 6.87541 7.25206 7.39588 8.93498 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.003035 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.936617 B = 9223.521938 C = 9937.842561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.519 5.519 3 C 0.036 3.964 4 C 0.084 3.916 5 C 0.068 3.932 6 N -0.477 5.477 7 C 0.091 3.909 8 C -0.126 4.126 9 C -0.091 4.091 10 C 0.545 3.455 11 O -0.537 6.537 12 N -0.712 5.712 13 C 0.134 3.866 14 C -0.102 4.102 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.198 0.802 32 H 0.170 0.830 33 H 0.412 0.588 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 12.754 19.911 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.240 5.240 3 C -0.110 4.110 4 C -0.014 4.014 5 C -0.093 4.093 6 N -0.186 5.186 7 C -0.064 4.064 8 C -0.146 4.146 9 C -0.103 4.103 10 C 0.332 3.668 11 O -0.414 6.414 12 N -0.366 5.366 13 C 0.010 3.990 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.191 0.809 31 H 0.214 0.786 32 H 0.187 0.813 33 H 0.250 0.750 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.061 13.214 19.394 25.533 hybrid contribution 0.619 -0.794 -0.648 1.198 sum -9.441 12.420 18.746 24.388 Atomic orbital electron populations 1.22439 0.84285 1.02307 1.02173 1.59103 1.09521 1.15045 1.40362 1.22409 1.00073 0.86224 1.02281 1.19958 0.96031 0.94260 0.91145 1.23586 0.98618 0.99620 0.87435 1.67500 1.08986 1.06906 1.35211 1.23277 0.93137 0.92403 0.97584 1.22713 0.99314 1.00588 0.92025 1.20563 0.99446 0.96785 0.93501 1.18383 0.78951 0.80543 0.88961 1.90819 1.53060 1.54979 1.42492 1.45904 1.50984 1.30119 1.09627 1.21217 0.98263 0.96599 0.82921 1.21602 0.98440 0.95192 0.98714 1.18937 0.94982 0.95046 0.92439 1.21667 1.30409 1.12872 0.93028 0.91406 1.26029 0.98098 1.00914 0.95080 1.70108 1.46758 1.42562 0.98178 0.85471 0.79164 0.79087 0.77145 1.18980 1.21272 1.18969 0.89796 0.93118 0.92662 0.93086 0.92763 0.89942 0.80913 0.78553 0.81252 0.75034 0.93206 0.93208 0.91223 0.91221 0.99003 0.99006 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.35 127.69 1.19 1.82 16 2 N -0.52 -12.20 3.09 -743.88 -2.30 -14.49 16 3 C 0.04 0.67 9.32 127.69 1.19 1.86 16 4 C 0.08 1.90 4.73 38.82 0.18 2.08 16 5 C 0.07 1.25 9.81 84.96 0.83 2.08 16 6 N -0.48 -8.83 10.32 -195.43 -2.02 -10.85 16 7 C 0.09 1.33 11.15 84.60 0.94 2.27 16 8 C -0.13 -2.04 9.61 22.62 0.22 -1.82 16 9 C -0.09 -2.17 5.92 -19.78 -0.12 -2.29 16 10 C 0.55 16.66 7.78 86.75 0.68 17.34 16 11 O -0.54 -20.78 15.18 -3.91 -0.06 -20.84 16 12 N -0.71 -19.78 5.51 -466.09 -2.57 -22.35 16 13 C 0.13 4.71 5.67 86.38 0.49 5.20 16 14 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 17 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 20 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 0.68 7.15 -2.39 -0.02 0.66 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.05 0.69 7.48 -2.38 -0.02 0.67 16 28 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.17 2.39 7.07 -2.91 -0.02 2.37 16 31 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.17 1.72 6.53 -2.91 -0.02 1.71 16 33 H 0.41 8.39 6.61 -92.71 -0.61 7.78 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.86 336.75 2.41 -71.46 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.42 Total: 11.71 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 6.61 Total: -3.27 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -6.60 Total: -104.58 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.06 Total: -20.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.86 2.41 -71.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198176868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.381 kcal (2) G-P(sol) polarization free energy of solvation -73.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds