Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99742 * 2 1 4 4 H 1.48500 * 109.46959 * 240.00162 * 3 2 1 5 5 H 1.48497 * 109.47466 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47095 * 120.00093 * 3 2 1 7 7 C 1.37877 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99674 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46869 * 184.14185 * 9 7 2 11 11 C 1.46900 * 111.00310 * 299.55697 * 10 9 7 12 12 C 1.53002 * 109.47241 * 287.82058 * 11 10 9 13 13 C 1.52992 * 109.47268 * 179.26871 * 12 11 10 14 14 C 1.53002 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47322 * 180.02562 * 14 13 12 16 16 O 1.42894 * 109.47150 * 180.02562 * 15 14 13 17 17 C 1.46898 * 110.99826 * 63.51284 * 10 9 7 18 18 C 1.50696 * 109.47447 * 66.04487 * 17 10 9 19 19 C 1.38231 * 120.00336 * 89.99999 * 18 17 10 20 20 C 1.38230 * 120.00554 * 180.02562 * 19 18 17 21 21 C 1.38241 * 119.99716 * 359.95562 * 20 19 18 22 22 C 1.38232 * 119.99786 * 0.27371 * 21 20 19 23 23 C 1.38237 * 120.00242 * 359.51714 * 22 21 20 24 24 H 0.97003 * 119.99769 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47413 * 64.14777 * 9 7 2 26 26 H 1.09000 * 109.47369 * 304.14544 * 9 7 2 27 27 H 1.09001 * 109.47226 * 47.81559 * 11 10 9 28 28 H 1.09005 * 109.47186 * 167.81811 * 11 10 9 29 29 H 1.09000 * 109.46722 * 299.26666 * 12 11 10 30 30 H 1.09004 * 109.47244 * 59.26521 * 12 11 10 31 31 H 1.09005 * 109.47067 * 300.00053 * 13 12 11 32 32 H 1.09004 * 109.47274 * 59.99668 * 13 12 11 33 33 H 1.09000 * 109.46722 * 299.99795 * 14 13 12 34 34 H 1.08999 * 109.46847 * 59.99874 * 14 13 12 35 35 H 1.09005 * 109.46980 * 300.00032 * 15 14 13 36 36 H 1.09004 * 109.47308 * 59.99615 * 15 14 13 37 37 H 0.96701 * 113.99689 * 180.02562 * 16 15 14 38 38 H 1.08996 * 109.46954 * 306.04288 * 17 10 9 39 39 H 1.09002 * 109.47090 * 186.04834 * 17 10 9 40 40 H 1.08002 * 119.99647 * 359.97438 * 19 18 17 41 41 H 1.07996 * 120.00587 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.99703 * 180.02562 * 21 20 19 43 43 H 1.07995 * 119.99793 * 179.72766 * 22 21 20 44 44 H 1.07995 * 119.99947 * 180.24995 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2025 -3.6138 0.1012 11 6 3.1323 -3.6168 -1.0361 12 6 2.3917 -4.0607 -2.2992 13 6 3.3555 -4.0463 -3.4872 14 6 2.6151 -4.4909 -4.7502 15 6 3.5791 -4.4771 -5.9382 16 8 2.8874 -4.8918 -7.1178 17 6 2.9306 -3.5709 1.3763 18 6 1.9704 -3.8155 2.5116 19 6 1.7368 -5.1042 2.9539 20 6 0.8556 -5.3287 3.9950 21 6 0.2085 -4.2643 4.5945 22 6 0.4385 -2.9760 4.1491 23 6 1.3231 -2.7512 3.1109 24 1 -0.4850 0.8401 0.0004 25 1 0.6816 -2.5899 -0.9245 26 1 0.5695 -2.5252 0.8508 27 1 3.5305 -2.6127 -1.1825 28 1 3.9516 -4.3067 -0.8339 29 1 2.0046 -5.0698 -2.1576 30 1 1.5644 -3.3783 -2.4942 31 1 3.7427 -3.0372 -3.6288 32 1 4.1828 -4.7288 -3.2923 33 1 2.2284 -5.5001 -4.6083 34 1 1.7876 -3.8088 -4.9453 35 1 3.9663 -3.4681 -6.0802 36 1 4.4064 -5.1595 -5.7428 37 1 3.4388 -4.9072 -7.9121 38 1 3.3943 -2.5919 1.4971 39 1 3.7019 -4.3411 1.3804 40 1 2.2422 -5.9358 2.4854 41 1 0.6727 -6.3355 4.3402 42 1 -0.4796 -4.4396 5.4082 43 1 -0.0703 -2.1449 4.6146 44 1 1.5058 -1.7443 2.7657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204598861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = -44.108289 kcal Electronic energy + Delta-G solvation = -21425.505819 eV Core-core repulsion = 18341.807893 eV Total energy + Delta-G solvation = -3083.697926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.86825 -37.39768 -36.71147 -34.37443 -32.50943 -31.26494 -30.31530 -29.23884 -27.02420 -25.37578 -23.96106 -22.36851 -21.89272 -21.02038 -20.33487 -19.43774 -17.32666 -16.53536 -16.01437 -15.83723 -15.06930 -14.77449 -14.56338 -14.38454 -14.22051 -13.96319 -13.38317 -13.00856 -12.81550 -12.27534 -12.26084 -12.15896 -11.94696 -11.49383 -11.18001 -11.08766 -11.01174 -10.80587 -10.69872 -10.58600 -10.52530 -10.27624 -10.00492 -9.99904 -9.97314 -9.80047 -9.55982 -8.45084 -8.28349 -8.14217 -7.12680 -6.02188 -4.11232 1.93284 2.00240 3.25754 3.31977 3.33549 4.15136 4.34758 4.38733 5.02332 5.07859 5.25097 5.27239 5.36306 5.39739 5.43309 5.49586 5.55409 5.63746 5.77150 5.84126 5.95000 5.97829 6.10690 6.17134 6.18837 6.28031 6.35612 6.39682 6.46404 6.51941 6.63430 6.73275 6.88716 6.94146 6.99474 7.11170 7.31570 7.35907 7.53703 7.56827 7.61928 7.92995 8.08780 8.28833 8.34195 8.99394 9.54439 11.02051 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.005047 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.291400 B = 5546.104918 C = 7401.217968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.182 3.818 10 N -0.538 5.538 11 C 0.060 3.940 12 C -0.108 4.108 13 C -0.113 4.113 14 C -0.119 4.119 15 C 0.074 3.926 16 O -0.577 6.577 17 C 0.097 3.903 18 C -0.059 4.059 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.090 4.090 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.375 0.625 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -8.943 -1.444 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.056 3.944 10 N -0.261 5.261 11 C -0.068 4.068 12 C -0.146 4.146 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.003 4.003 16 O -0.382 6.382 17 C -0.031 4.031 18 C -0.059 4.059 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.108 4.108 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.221 0.779 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.401 -9.304 -1.036 10.808 hybrid contribution 1.294 1.920 -0.407 2.351 sum 6.695 -7.384 -1.444 10.072 Atomic orbital electron populations 1.69941 1.05890 1.26797 1.49897 1.24913 0.94674 0.98804 0.95109 0.86817 0.79798 0.83783 0.78591 1.20364 1.21239 1.20296 1.21649 0.93085 0.92096 1.51703 0.92710 1.19855 0.91266 0.85155 0.98119 1.62550 1.16956 1.47009 0.99571 1.21937 0.94138 0.99701 0.91038 1.21455 0.98499 1.01674 0.92932 1.21455 0.98470 1.01212 0.93957 1.21534 0.98713 1.02642 0.92788 1.22280 0.94661 0.97927 0.85439 1.86501 1.41730 1.91005 1.18970 1.20884 0.93503 1.00099 0.88633 1.19835 0.97617 0.92773 0.95725 1.20948 0.98702 0.96382 0.96725 1.20969 0.98409 0.98245 0.97645 1.20996 1.00457 0.93135 1.00471 1.21108 0.98944 0.96600 0.97836 1.21369 0.94999 1.00170 0.94264 0.92803 0.95410 0.94078 0.93444 0.93501 0.92283 0.91157 0.91925 0.92484 0.91462 0.91127 0.93730 0.93915 0.77865 0.93089 0.92420 0.86764 0.87033 0.87106 0.86769 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.88 20.89 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.55 -14.26 7.18 -34.44 -0.25 -14.51 16 8 H 0.05 1.42 5.95 -52.49 -0.31 1.11 16 9 C 0.18 4.51 4.62 -4.98 -0.02 4.49 16 10 N -0.54 -11.21 4.66 -237.52 -1.11 -12.31 16 11 C 0.06 1.12 4.80 -3.82 -0.02 1.10 16 12 C -0.11 -1.83 5.28 -26.73 -0.14 -1.97 16 13 C -0.11 -1.56 5.21 -26.73 -0.14 -1.70 16 14 C -0.12 -1.59 5.58 -26.73 -0.15 -1.74 16 15 C 0.07 0.84 7.05 37.16 0.26 1.10 16 16 O -0.58 -6.75 13.66 -35.23 -0.48 -7.23 16 17 C 0.10 1.86 4.94 -4.98 -0.02 1.84 16 18 C -0.06 -1.12 4.89 -104.63 -0.51 -1.63 16 19 C -0.11 -1.82 9.70 -39.59 -0.38 -2.21 16 20 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 21 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 23 C -0.09 -1.77 7.91 -39.58 -0.31 -2.09 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.76 6.68 -51.92 -0.35 0.41 16 26 H 0.04 1.11 5.92 -51.93 -0.31 0.81 16 27 H 0.05 0.98 6.12 -51.93 -0.32 0.66 16 28 H 0.05 0.77 7.81 -51.93 -0.41 0.37 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.38 6.74 -51.93 -0.35 1.03 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.38 2.47 9.12 45.56 0.42 2.89 16 38 H 0.05 1.06 6.56 -51.93 -0.34 0.72 16 39 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.13 2.94 7.83 -52.49 -0.41 2.53 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -29.62 353.27 -10.09 -39.71 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.57 Total: 6.39 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.98 Total: -23.10 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.37 Total: -36.96 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.48 Total: -7.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.62 -10.09 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204598861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.397 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds