Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99742 * 2 1 4 4 H 1.48500 * 109.46959 * 240.00162 * 3 2 1 5 5 H 1.48497 * 109.47466 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47095 * 120.00093 * 3 2 1 7 7 C 1.37877 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99674 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46869 * 184.14185 * 9 7 2 11 11 C 1.46900 * 111.00310 * 299.55697 * 10 9 7 12 12 C 1.53002 * 109.47241 * 287.82058 * 11 10 9 13 13 C 1.52992 * 109.47268 * 179.26871 * 12 11 10 14 14 C 1.53002 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47322 * 180.02562 * 14 13 12 16 16 O 1.42894 * 109.47150 * 180.02562 * 15 14 13 17 17 C 1.46898 * 110.99826 * 63.51284 * 10 9 7 18 18 C 1.50696 * 109.47447 * 66.04487 * 17 10 9 19 19 C 1.38231 * 120.00336 * 89.99999 * 18 17 10 20 20 C 1.38230 * 120.00554 * 180.02562 * 19 18 17 21 21 C 1.38241 * 119.99716 * 359.95562 * 20 19 18 22 22 C 1.38232 * 119.99786 * 0.27371 * 21 20 19 23 23 C 1.38237 * 120.00242 * 359.51714 * 22 21 20 24 24 H 0.97003 * 119.99769 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47413 * 64.14777 * 9 7 2 26 26 H 1.09000 * 109.47369 * 304.14544 * 9 7 2 27 27 H 1.09001 * 109.47226 * 47.81559 * 11 10 9 28 28 H 1.09005 * 109.47186 * 167.81811 * 11 10 9 29 29 H 1.09000 * 109.46722 * 299.26666 * 12 11 10 30 30 H 1.09004 * 109.47244 * 59.26521 * 12 11 10 31 31 H 1.09005 * 109.47067 * 300.00053 * 13 12 11 32 32 H 1.09004 * 109.47274 * 59.99668 * 13 12 11 33 33 H 1.09000 * 109.46722 * 299.99795 * 14 13 12 34 34 H 1.08999 * 109.46847 * 59.99874 * 14 13 12 35 35 H 1.09005 * 109.46980 * 300.00032 * 15 14 13 36 36 H 1.09004 * 109.47308 * 59.99615 * 15 14 13 37 37 H 0.96701 * 113.99689 * 180.02562 * 16 15 14 38 38 H 1.08996 * 109.46954 * 306.04288 * 17 10 9 39 39 H 1.09002 * 109.47090 * 186.04834 * 17 10 9 40 40 H 1.08002 * 119.99647 * 359.97438 * 19 18 17 41 41 H 1.07996 * 120.00587 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.99703 * 180.02562 * 21 20 19 43 43 H 1.07995 * 119.99793 * 179.72766 * 22 21 20 44 44 H 1.07995 * 119.99947 * 180.24995 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2025 -3.6138 0.1012 11 6 3.1323 -3.6168 -1.0361 12 6 2.3917 -4.0607 -2.2992 13 6 3.3555 -4.0463 -3.4872 14 6 2.6151 -4.4909 -4.7502 15 6 3.5791 -4.4771 -5.9382 16 8 2.8874 -4.8918 -7.1178 17 6 2.9306 -3.5709 1.3763 18 6 1.9704 -3.8155 2.5116 19 6 1.7368 -5.1042 2.9539 20 6 0.8556 -5.3287 3.9950 21 6 0.2085 -4.2643 4.5945 22 6 0.4385 -2.9760 4.1491 23 6 1.3231 -2.7512 3.1109 24 1 -0.4850 0.8401 0.0004 25 1 0.6816 -2.5899 -0.9245 26 1 0.5695 -2.5252 0.8508 27 1 3.5305 -2.6127 -1.1825 28 1 3.9516 -4.3067 -0.8339 29 1 2.0046 -5.0698 -2.1576 30 1 1.5644 -3.3783 -2.4942 31 1 3.7427 -3.0372 -3.6288 32 1 4.1828 -4.7288 -3.2923 33 1 2.2284 -5.5001 -4.6083 34 1 1.7876 -3.8088 -4.9453 35 1 3.9663 -3.4681 -6.0802 36 1 4.4064 -5.1595 -5.7428 37 1 3.4388 -4.9072 -7.9121 38 1 3.3943 -2.5919 1.4971 39 1 3.7019 -4.3411 1.3804 40 1 2.2422 -5.9358 2.4854 41 1 0.6727 -6.3355 4.3402 42 1 -0.4796 -4.4396 5.4082 43 1 -0.0703 -2.1449 4.6146 44 1 1.5058 -1.7443 2.7657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204598861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = -63.108783 kcal Electronic energy + Delta-G solvation = -21426.329742 eV Core-core repulsion = 18341.807893 eV Total energy + Delta-G solvation = -3084.521849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29109 -38.62571 -37.95722 -35.63584 -34.52804 -32.61067 -31.65662 -30.61766 -28.90228 -26.68648 -25.74931 -23.77517 -23.25132 -22.15292 -21.68166 -21.14462 -18.49505 -18.20327 -17.42893 -17.05304 -16.70248 -16.31925 -16.06256 -15.95494 -15.50844 -15.06123 -14.82915 -14.61076 -14.15979 -13.97739 -13.58305 -13.41666 -13.32055 -13.03664 -12.86665 -12.71982 -12.51622 -12.37963 -12.23046 -12.02786 -11.81069 -11.79024 -11.70093 -11.58249 -11.35642 -11.28545 -10.85586 -10.55427 -9.65149 -9.52783 -8.92230 -8.10496 -6.28545 0.59245 0.65363 1.35094 1.35148 1.42922 2.37085 2.94565 3.13851 3.29329 3.66699 4.00211 4.06648 4.14945 4.18660 4.26872 4.29382 4.35123 4.41780 4.49877 4.60856 4.67118 4.74452 4.76411 4.84532 4.89612 4.95326 5.00443 5.03457 5.14612 5.25526 5.28202 5.32097 5.37376 5.41087 5.49921 5.54182 5.69537 5.75352 5.82314 5.93344 6.12596 6.27694 6.31728 6.62013 6.92428 6.92873 7.40999 8.90802 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.005047 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.291400 B = 5546.104918 C = 7401.217968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.202 3.798 10 N -0.537 5.537 11 C 0.060 3.940 12 C -0.101 4.101 13 C -0.102 4.102 14 C -0.119 4.119 15 C 0.077 3.923 16 O -0.599 6.599 17 C 0.100 3.900 18 C -0.080 4.080 19 C -0.111 4.111 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.118 4.118 24 H 0.262 0.738 25 H -0.004 1.004 26 H 0.015 0.985 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.026 0.974 39 H 0.089 0.911 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -10.947 -1.049 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.076 3.924 10 N -0.260 5.260 11 C -0.067 4.067 12 C -0.139 4.139 13 C -0.140 4.140 14 C -0.157 4.157 15 C 0.000 4.000 16 O -0.407 6.407 17 C -0.028 4.028 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.158 4.158 23 C -0.137 4.137 24 H 0.071 0.929 25 H 0.014 0.986 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.140 0.860 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.976 -11.317 -0.658 13.311 hybrid contribution 0.791 2.451 -0.495 2.623 sum 7.767 -8.866 -1.152 11.843 Atomic orbital electron populations 1.70071 1.07419 1.27492 1.51368 1.25675 0.95401 1.02225 0.94960 0.85819 0.78596 0.79716 0.78860 1.19616 1.21040 1.19617 1.21842 0.93057 0.92812 1.50474 0.92735 1.19399 0.91533 0.86348 0.95155 1.62494 1.17522 1.44698 1.01265 1.22031 0.94598 0.99318 0.90797 1.21380 0.98018 1.00727 0.93786 1.21343 0.98259 1.01688 0.92693 1.21487 0.98605 1.01838 0.93763 1.22216 0.94253 0.98980 0.84561 1.86439 1.43155 1.91044 1.20100 1.20918 0.94087 0.99793 0.87982 1.19889 0.98302 0.93774 0.96057 1.21222 0.98980 0.95689 0.97082 1.21436 0.96744 0.99992 0.96330 1.21391 1.00312 0.92025 1.00807 1.21297 0.98639 0.98357 0.97483 1.21185 0.97384 0.98803 0.96319 0.92913 0.98629 0.96713 0.95725 0.90207 0.91698 0.95012 0.92462 0.89782 0.91529 0.93505 0.93122 0.91661 0.75323 0.95586 0.89302 0.84540 0.83161 0.83673 0.86040 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.94 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.54 -29.64 7.18 25.60 0.18 -29.46 16 8 H 0.05 2.93 5.95 -2.92 -0.02 2.91 16 9 C 0.20 10.63 4.62 85.56 0.40 11.02 16 10 N -0.54 -22.81 4.66 -905.36 -4.22 -27.03 16 11 C 0.06 2.24 4.80 86.30 0.41 2.65 16 12 C -0.10 -3.47 5.28 30.59 0.16 -3.31 16 13 C -0.10 -2.71 5.21 30.59 0.16 -2.55 16 14 C -0.12 -3.10 5.58 30.60 0.17 -2.92 16 15 C 0.08 1.60 7.05 71.98 0.51 2.10 16 16 O -0.60 -13.02 13.66 -148.98 -2.03 -15.05 16 17 C 0.10 3.86 4.94 85.56 0.42 4.28 16 18 C -0.08 -3.04 4.89 -19.87 -0.10 -3.14 16 19 C -0.11 -3.48 9.70 22.27 0.22 -3.26 16 20 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 21 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 22 C -0.14 -4.91 10.05 22.27 0.22 -4.68 16 23 C -0.12 -4.89 7.91 22.27 0.18 -4.72 16 24 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.00 -0.25 6.68 -2.38 -0.02 -0.27 16 26 H 0.01 0.85 5.92 -2.39 -0.01 0.84 16 27 H 0.02 1.02 6.12 -2.39 -0.01 1.01 16 28 H 0.08 2.44 7.81 -2.38 -0.02 2.42 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.03 1.32 6.74 -2.38 -0.02 1.30 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.40 4.41 9.12 -74.06 -0.68 3.74 16 38 H 0.03 1.12 6.56 -2.39 -0.02 1.11 16 39 H 0.09 2.84 7.80 -2.39 -0.02 2.82 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 Total: -1.00 -67.34 353.27 0.19 -67.15 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.29 Total: 23.09 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 3.84 Total: -39.25 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.93 Total: -82.02 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -2.03 Total: -15.05 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.34 0.19 -67.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204598861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.040 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds