Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35681 * 116.99906 * 2 1 4 4 C 1.39114 * 120.07110 * 179.97438 * 3 2 1 5 5 N 1.31968 * 119.91436 * 179.74192 * 4 3 2 6 6 C 1.32247 * 120.06464 * 0.53091 * 5 4 3 7 7 C 1.50703 * 119.92652 * 179.76758 * 6 5 4 8 8 N 1.46905 * 109.46790 * 274.72154 * 7 6 5 9 9 C 1.46849 * 110.99984 * 66.04816 * 8 7 6 10 10 C 1.53030 * 109.52310 * 174.15971 * 9 8 7 11 11 C 1.53117 * 109.28109 * 59.17898 * 10 9 8 12 12 C 1.53122 * 109.16056 * 302.34578 * 11 10 9 13 13 H 1.09002 * 109.50111 * 297.71613 * 12 11 10 14 14 C 1.50696 * 109.50403 * 177.59267 * 12 11 10 15 15 H 1.08004 * 120.00123 * 275.20109 * 14 12 11 16 16 C 1.37874 * 119.99752 * 95.20715 * 14 12 11 17 17 N 1.31522 * 120.00095 * 185.50208 * 16 14 12 18 18 Si 1.86801 * 120.00108 * 5.49617 * 16 14 12 19 19 H 1.48504 * 109.47032 * 84.79002 * 18 16 14 20 20 H 1.48505 * 109.47253 * 204.78488 * 18 16 14 21 21 H 1.48493 * 109.47299 * 324.78727 * 18 16 14 22 22 C 1.46840 * 111.00203 * 301.83697 * 8 7 6 23 23 C 1.38186 * 120.14502 * 359.48617 * 6 5 4 24 24 N 1.32238 * 120.08595 * 0.23942 * 23 6 5 25 25 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47812 * 300.00832 * 1 2 3 27 27 H 1.09007 * 109.46553 * 60.00650 * 1 2 3 28 28 H 1.07998 * 120.04495 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.46836 * 154.72475 * 7 6 5 30 30 H 1.08995 * 109.46990 * 34.71697 * 7 6 5 31 31 H 1.09000 * 109.46346 * 294.17985 * 9 8 7 32 32 H 1.09002 * 109.46071 * 54.14472 * 9 8 7 33 33 H 1.08997 * 109.50492 * 179.11923 * 10 9 8 34 34 H 1.09005 * 109.50326 * 299.23516 * 10 9 8 35 35 H 1.08994 * 109.52110 * 62.24987 * 11 10 9 36 36 H 1.09001 * 109.52849 * 182.38068 * 11 10 9 37 37 H 0.96997 * 120.00233 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.46447 * 305.85885 * 22 8 7 39 39 H 1.09004 * 109.46179 * 65.82455 * 22 8 7 40 40 H 1.08002 * 119.95977 * 180.25697 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4341 1.2835 0.0005 5 7 4.0300 2.4610 -0.0046 6 6 3.3079 3.5689 0.0003 7 6 3.9917 4.9119 -0.0003 8 7 4.3213 5.2942 1.3793 9 6 5.3279 4.3899 1.9498 10 6 5.7525 4.9015 3.3281 11 6 4.5257 4.9710 4.2416 12 6 3.4733 5.8806 3.6014 13 1 3.8740 6.8898 3.5063 14 6 2.2390 5.9077 4.4655 15 1 1.4899 5.1367 4.3614 16 6 2.0660 6.9168 5.3889 17 7 1.0447 6.8825 6.2169 18 14 3.2821 8.3327 5.4640 19 1 2.9007 9.3663 4.4681 20 1 3.2665 8.9271 6.8248 21 1 4.6459 7.8307 5.1587 22 6 3.1148 5.3405 2.2151 23 6 1.9279 3.4979 0.0002 24 7 1.3247 2.3211 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 4.0241 0.3789 0.0014 29 1 3.3265 5.6580 -0.4350 30 1 4.9068 4.8534 -0.5895 31 1 4.9042 3.3904 2.0480 32 1 6.1968 4.3528 1.2926 33 1 6.4881 4.2217 3.7579 34 1 6.1891 5.8954 3.2287 35 1 4.1119 3.9712 4.3724 36 1 4.8160 5.3750 5.2115 37 1 0.9232 7.5923 6.8668 38 1 2.3761 5.9939 1.7507 39 1 2.7014 4.3366 2.3122 40 1 1.3412 4.4047 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231936970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -13.386738 kcal Electronic energy + Delta-G solvation = -22016.739130 eV Core-core repulsion = 18830.833047 eV Total energy + Delta-G solvation = -3185.906083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.47815 -40.17847 -39.17140 -35.85435 -35.05288 -34.21851 -32.10942 -31.71528 -28.92281 -27.37570 -26.88619 -25.64021 -24.50836 -23.07519 -22.56178 -20.42037 -19.53319 -19.09030 -18.97847 -17.40977 -17.29956 -16.80789 -15.98262 -15.89610 -15.72390 -15.59157 -15.39168 -14.79870 -14.67698 -14.49097 -14.32573 -13.73444 -13.42571 -13.06119 -12.97630 -12.80078 -12.73661 -12.56785 -12.52103 -12.22152 -12.08091 -11.81170 -11.71292 -11.31393 -11.08921 -10.84457 -10.63167 -10.42676 -9.72628 -9.25732 -8.28464 -6.32644 -0.26108 0.01469 1.38876 1.39495 1.51677 1.88110 2.37630 2.53601 3.00407 3.03344 3.08744 3.21579 3.44147 3.92171 4.03875 4.14953 4.19878 4.25415 4.32665 4.37514 4.42939 4.47194 4.60812 4.65278 4.72659 4.80293 4.87897 4.90390 4.97459 5.06520 5.08683 5.22075 5.24931 5.54955 5.64336 5.73090 5.91713 6.08084 6.14164 6.21823 6.36254 6.66157 6.75238 7.34143 8.88645 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.005223 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.242053 B = 5359.953225 C = 6095.293003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.255 3.745 4 C 0.038 3.962 5 N -0.403 5.403 6 C 0.002 3.998 7 C 0.113 3.887 8 N -0.525 5.525 9 C 0.068 3.932 10 C -0.114 4.114 11 C -0.111 4.111 12 C 0.018 3.982 13 H 0.041 0.959 14 C -0.515 4.515 15 H 0.022 0.978 16 C 0.014 3.986 17 N -0.952 5.952 18 Si 0.945 3.055 19 H -0.263 1.263 20 H -0.292 1.292 21 H -0.245 1.245 22 C 0.084 3.916 23 C 0.098 3.902 24 N -0.513 5.513 25 H 0.131 0.869 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.199 0.801 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.019 0.981 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.071 0.929 39 H 0.002 0.998 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 -9.068 -15.942 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.073 3.927 4 C -0.125 4.125 5 N -0.119 5.119 6 C -0.139 4.139 7 C -0.016 4.016 8 N -0.248 5.248 9 C -0.060 4.060 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.001 4.001 13 H 0.059 0.941 14 C -0.553 4.553 15 H 0.040 0.960 16 C -0.183 4.183 17 N -0.592 5.592 18 Si 0.769 3.231 19 H -0.188 1.188 20 H -0.218 1.218 21 H -0.169 1.169 22 C -0.044 4.044 23 C -0.060 4.060 24 N -0.242 5.242 25 H 0.149 0.851 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.216 0.784 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.020 0.980 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.468 -8.775 -15.818 19.211 hybrid contribution -1.085 -0.311 0.828 1.400 sum 5.383 -9.085 -14.991 18.337 Atomic orbital electron populations 1.23133 0.75677 1.05162 1.02124 1.86245 1.24445 1.23085 1.87401 1.21254 0.91797 0.85881 0.93786 1.23311 0.89660 0.98117 1.01427 1.68409 1.38729 0.97753 1.06993 1.23285 0.92715 0.97487 1.00396 1.21368 1.01500 0.87843 0.90910 1.62416 1.10956 1.49555 1.01838 1.22020 0.95274 0.92882 0.95837 1.21657 0.97005 1.01885 0.94675 1.21741 0.96136 0.98749 0.98280 1.19115 0.93156 0.95900 0.91908 0.94073 1.21190 1.05044 1.09863 1.19199 0.95950 1.25940 0.97118 1.00897 0.94358 1.70073 1.32533 1.34993 1.21599 0.85758 0.80829 0.79302 0.77177 1.18770 1.21810 1.16852 1.21960 0.90966 0.97493 0.93962 1.23673 0.93667 0.95452 0.93257 1.68065 1.40742 0.99197 1.16212 0.85096 0.93365 0.92037 0.78377 0.86825 0.87193 0.96247 0.88836 0.90590 0.91300 0.95306 0.94276 0.92596 0.91092 0.97987 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.40 113.37 1.18 1.82 16 2 O -0.31 -7.40 10.49 -89.99 -0.94 -8.34 16 3 C 0.26 6.98 7.49 84.80 0.64 7.61 16 4 C 0.04 0.96 11.18 84.88 0.95 1.91 16 5 N -0.40 -10.88 9.18 -182.89 -1.68 -12.56 16 6 C 0.00 0.04 4.66 42.48 0.20 0.24 16 7 C 0.11 2.72 5.72 85.56 0.49 3.21 16 8 N -0.53 -16.37 4.86 -900.93 -4.38 -20.75 16 9 C 0.07 2.04 4.97 86.32 0.43 2.47 16 10 C -0.11 -3.74 6.09 30.64 0.19 -3.55 16 11 C -0.11 -4.69 5.27 30.67 0.16 -4.53 16 12 C 0.02 0.85 1.94 -11.49 -0.02 0.83 16 13 H 0.04 1.90 5.27 -2.39 -0.01 1.89 16 14 C -0.51 -29.43 8.86 25.60 0.23 -29.20 16 15 H 0.02 1.44 8.06 -2.91 -0.02 1.41 16 16 C 0.01 0.80 5.47 84.65 0.46 1.26 16 17 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 18 Si 0.95 44.36 27.01 68.60 1.85 46.22 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.24 -10.70 6.80 99.48 0.68 -10.03 16 22 C 0.08 3.28 3.93 86.33 0.34 3.62 16 23 C 0.10 2.75 9.58 84.62 0.81 3.56 16 24 N -0.51 -15.14 9.40 -308.19 -2.90 -18.04 16 25 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16 27 H 0.06 1.13 8.11 -2.38 -0.02 1.11 16 28 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.11 2.28 8.05 -2.39 -0.02 2.26 16 30 H 0.11 2.26 8.06 -2.39 -0.02 2.24 16 31 H 0.02 0.65 6.72 -2.39 -0.02 0.63 16 32 H 0.09 2.36 8.06 -2.39 -0.02 2.35 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.07 2.71 8.12 -2.38 -0.02 2.69 16 39 H 0.00 0.08 6.68 -2.38 -0.02 0.07 16 40 H 0.18 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -69.64 321.82 -0.71 -70.35 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.99 Total: 13.43 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 6.04 Total: -10.76 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -8.65 Total: -110.90 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.94 Total: -8.34 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.85 Total: 46.22 kcal Total: -69.64 -0.71 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231936970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.966 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds