Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35682 * 116.99981 * 2 1 4 4 C 1.39114 * 120.07008 * 180.02562 * 3 2 1 5 5 N 1.31967 * 119.91214 * 179.68802 * 4 3 2 6 6 C 1.32242 * 120.06631 * 0.56882 * 5 4 3 7 7 C 1.50703 * 119.92684 * 179.72656 * 6 5 4 8 8 N 1.46899 * 109.47107 * 274.72642 * 7 6 5 9 9 C 1.46851 * 110.99898 * 45.79103 * 8 7 6 10 10 C 1.53039 * 109.52490 * 185.83779 * 9 8 7 11 11 C 1.53116 * 109.27694 * 300.82213 * 10 9 8 12 12 C 1.50701 * 109.57285 * 177.58822 * 11 10 9 13 13 H 1.08007 * 119.99710 * 240.27981 * 12 11 10 14 14 C 1.37876 * 120.00105 * 60.29025 * 12 11 10 15 15 N 1.31509 * 119.99922 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00069 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47213 * 59.99414 * 16 14 12 18 18 H 1.48496 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46791 * 299.99530 * 16 14 12 20 20 C 1.53121 * 109.16460 * 57.65281 * 11 10 9 21 21 C 1.46842 * 111.00041 * 169.99728 * 8 7 6 22 22 C 1.38186 * 120.14382 * 359.45552 * 6 5 4 23 23 N 1.32232 * 120.08615 * 0.24529 * 22 6 5 24 24 H 1.09003 * 109.47125 * 59.99461 * 1 2 3 25 25 H 1.08993 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46988 * 300.00002 * 1 2 3 27 27 H 1.07999 * 120.04226 * 359.96172 * 4 3 2 28 28 H 1.09002 * 109.47152 * 154.72730 * 7 6 5 29 29 H 1.09001 * 109.46980 * 34.72830 * 7 6 5 30 30 H 1.08996 * 109.46471 * 305.85679 * 9 8 7 31 31 H 1.09004 * 109.45929 * 65.82278 * 9 8 7 32 32 H 1.08992 * 109.50519 * 180.88071 * 10 9 8 33 33 H 1.09002 * 109.53120 * 60.77905 * 10 9 8 34 34 H 1.08999 * 109.52546 * 297.75036 * 11 10 9 35 35 H 0.96996 * 120.00279 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.50961 * 182.40006 * 20 11 10 37 37 H 1.09008 * 109.53352 * 62.30425 * 20 11 10 38 38 H 1.08996 * 109.46789 * 294.18136 * 21 8 7 39 39 H 1.09007 * 109.45854 * 54.15867 * 21 8 7 40 40 H 1.08004 * 119.95224 * 180.27404 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4341 1.2835 -0.0005 5 7 4.0300 2.4609 -0.0068 6 6 3.3080 3.5689 -0.0011 7 6 3.9918 4.9118 -0.0020 8 7 4.3226 5.2938 1.3773 9 6 4.9294 4.1708 2.1033 10 6 5.1262 4.5571 3.5710 11 6 6.0304 5.7901 3.6524 12 6 6.1807 6.2118 5.0913 13 1 5.8587 7.1947 5.4024 14 6 6.7295 5.3431 6.0107 15 7 7.1213 4.1462 5.6319 16 14 6.9151 5.8656 7.7944 17 1 5.5792 6.1872 8.3577 18 1 7.5269 4.7591 8.5733 19 1 7.7864 7.0657 7.8705 20 6 5.3993 6.9302 2.8483 21 6 5.1947 6.4750 1.4015 22 6 1.9280 3.4978 -0.0001 23 7 1.3248 2.3211 0.0002 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0241 0.3789 -0.0003 28 1 3.3264 5.6581 -0.4361 29 1 4.9064 4.8535 -0.5921 30 1 4.2745 3.3018 2.0411 31 1 5.8950 3.9302 1.6585 32 1 5.5909 3.7290 4.1061 33 1 4.1596 4.7843 4.0207 34 1 7.0101 5.5513 3.2385 35 1 7.5070 3.5349 6.2786 36 1 6.0591 7.7975 2.8671 37 1 4.4369 7.1956 3.2859 38 1 6.1590 6.2237 0.9601 39 1 4.7322 7.2797 0.8298 40 1 1.3414 4.4047 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231937521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = -7.535049 kcal Electronic energy + Delta-G solvation = -21571.777185 eV Core-core repulsion = 18386.124850 eV Total energy + Delta-G solvation = -3185.652335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42240 -40.03611 -39.18117 -36.01132 -35.06967 -33.74724 -31.88583 -31.43477 -29.11251 -27.84995 -26.16993 -25.65527 -24.02141 -23.60535 -22.47508 -20.34676 -19.48801 -19.06593 -18.44795 -17.40942 -17.11913 -16.86879 -16.34423 -15.78075 -15.60451 -15.44350 -15.02302 -14.90698 -14.76811 -14.30114 -14.09803 -13.43941 -13.15998 -13.11915 -12.97195 -12.83004 -12.55683 -12.50663 -12.41056 -12.27430 -12.03000 -11.96950 -11.85191 -11.35170 -10.79242 -10.66569 -10.37854 -10.25889 -9.72630 -9.16705 -8.07036 -6.21137 -0.21239 0.04130 1.41190 1.42877 1.50353 1.91022 2.44077 2.52130 3.06071 3.11486 3.19454 3.25890 3.46824 3.87294 4.08488 4.23178 4.34034 4.38981 4.39464 4.44306 4.52501 4.54459 4.68627 4.72367 4.77137 4.81500 4.89249 5.00696 5.07448 5.13345 5.25095 5.34396 5.57134 5.62332 5.96846 5.99022 6.00444 6.15832 6.23656 6.31439 6.40741 6.71471 6.91476 7.46933 8.97300 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.004162 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.862428 B = 6725.340706 C = 7479.155937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.262 3.738 4 C 0.035 3.965 5 N -0.421 5.421 6 C 0.032 3.968 7 C 0.112 3.888 8 N -0.532 5.532 9 C 0.084 3.916 10 C -0.094 4.094 11 C 0.044 3.956 12 C -0.534 4.534 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.920 5.920 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.099 4.099 21 C 0.066 3.934 22 C 0.115 3.885 23 N -0.505 5.505 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.055 0.945 27 H 0.190 0.810 28 H 0.130 0.870 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.009 0.991 32 H 0.054 0.946 33 H 0.027 0.973 34 H -0.014 1.014 35 H 0.259 0.741 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.103 0.897 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 -3.677 -14.722 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.213 6.213 3 C 0.080 3.920 4 C -0.129 4.129 5 N -0.137 5.137 6 C -0.106 4.106 7 C -0.016 4.016 8 N -0.258 5.258 9 C -0.045 4.045 10 C -0.132 4.132 11 C 0.026 3.974 12 C -0.572 4.572 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.043 4.043 23 N -0.235 5.235 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.207 0.793 28 H 0.147 0.853 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.004 0.996 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.121 0.879 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.858 -3.988 -14.432 19.736 hybrid contribution 0.978 -0.351 0.901 1.375 sum -11.881 -4.339 -13.532 18.522 Atomic orbital electron populations 1.23166 0.75415 1.05138 1.02451 1.86264 1.24713 1.23083 1.87286 1.21106 0.91366 0.86111 0.93467 1.23161 0.90144 0.97573 1.02006 1.68364 1.39833 0.98434 1.07089 1.22113 0.92924 0.95050 1.00521 1.21060 0.99807 0.90838 0.89925 1.62201 1.45073 1.05507 1.13010 1.21874 0.95425 0.92501 0.94652 1.21421 0.97856 1.00657 0.93308 1.18654 0.92596 0.92344 0.93837 1.21600 1.40182 1.00253 0.95160 0.92783 1.25781 0.95157 0.95005 1.02862 1.70032 1.42689 1.07678 1.35559 0.85682 0.78505 0.77830 0.80070 1.19659 1.21127 1.19464 1.21543 0.99964 0.97938 0.94274 1.22109 0.94102 0.92570 0.97319 1.23716 0.92612 0.95828 0.92162 1.68142 1.40072 0.98887 1.16383 0.91875 0.85461 0.92650 0.79289 0.85256 0.93288 0.92980 0.97238 0.92789 0.95435 0.99627 0.93206 0.92401 0.92673 0.95999 0.87863 0.77949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.40 113.37 1.18 1.69 16 2 O -0.31 -6.90 10.49 -90.00 -0.94 -7.85 16 3 C 0.26 6.71 7.49 84.80 0.64 7.35 16 4 C 0.03 0.93 11.18 84.88 0.95 1.87 16 5 N -0.42 -12.69 8.84 -182.89 -1.62 -14.30 16 6 C 0.03 0.87 4.89 42.49 0.21 1.08 16 7 C 0.11 2.84 5.61 85.56 0.48 3.32 16 8 N -0.53 -17.89 4.80 -900.91 -4.32 -22.21 16 9 C 0.08 3.49 4.73 86.33 0.41 3.90 16 10 C -0.09 -4.75 5.12 30.65 0.16 -4.59 16 11 C 0.04 2.29 2.16 -11.46 -0.02 2.27 16 12 C -0.53 -30.27 8.56 25.60 0.22 -30.05 16 13 H 0.05 2.98 7.75 -2.91 -0.02 2.96 16 14 C 0.01 0.58 5.31 84.66 0.45 1.03 16 15 N -0.92 -55.12 11.37 21.45 0.24 -54.88 16 16 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 C -0.10 -4.07 5.32 30.65 0.16 -3.91 16 21 C 0.07 2.18 5.42 86.33 0.47 2.65 16 22 C 0.12 2.69 10.85 84.62 0.92 3.61 16 23 N -0.51 -12.71 9.40 -308.19 -2.90 -15.60 16 24 H 0.06 0.93 8.11 -2.39 -0.02 0.92 16 25 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 0.93 8.11 -2.38 -0.02 0.91 16 27 H 0.19 4.13 8.06 -2.91 -0.02 4.10 16 28 H 0.13 2.26 8.05 -2.39 -0.02 2.24 16 29 H 0.05 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.05 2.16 5.77 -2.39 -0.01 2.15 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 3.11 6.17 -2.39 -0.01 3.09 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 2.59 8.12 -2.38 -0.02 2.57 16 40 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -68.37 324.38 -0.28 -68.66 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.02 Total: 9.28 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 6.21 Total: -9.79 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -8.59 Total: -107.00 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.94 Total: -7.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.37 -0.28 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231937521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.123 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds