Wall clock time and date at job start Mon Mar 30 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 120.00330 * 2 1 4 4 H 1.07998 * 120.00163 * 202.34844 * 3 2 1 5 5 C 1.38807 * 119.99979 * 22.34231 * 3 2 1 6 6 N 1.31626 * 120.00116 * 11.34451 * 5 3 2 7 7 Si 1.86801 * 120.00063 * 191.34326 * 5 3 2 8 8 H 1.48502 * 109.47259 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47033 * 120.00055 * 7 5 3 10 10 H 1.48497 * 109.47280 * 239.99965 * 7 5 3 11 11 C 1.46502 * 119.99595 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47107 * 269.99902 * 11 2 1 13 13 C 1.38066 * 119.57098 * 95.00655 * 12 11 2 14 14 C 1.38843 * 119.32361 * 180.02562 * 13 12 11 15 15 C 1.38342 * 118.50939 * 359.97438 * 14 13 12 16 16 C 1.39099 * 119.09666 * 0.02562 * 15 14 13 17 17 N 1.39008 * 119.70197 * 179.97438 * 16 15 14 18 18 C 1.47020 * 110.99674 * 56.32138 * 17 16 15 19 19 C 1.53091 * 109.25289 * 182.34892 * 18 17 16 20 20 O 1.43018 * 109.29361 * 303.21338 * 19 18 17 21 21 C 1.43014 * 113.73297 * 58.65630 * 20 19 18 22 22 C 1.47007 * 110.99646 * 180.02562 * 17 16 15 23 23 N 1.31942 * 119.56995 * 275.27385 * 12 11 2 24 24 H 1.08998 * 109.47283 * 274.22423 * 1 2 3 25 25 H 1.09007 * 109.47323 * 34.22162 * 1 2 3 26 26 H 1.09001 * 109.47430 * 154.22067 * 1 2 3 27 27 H 0.96999 * 119.99944 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46766 * 149.99707 * 11 2 1 29 29 H 1.08999 * 109.47144 * 30.00249 * 11 2 1 30 30 H 1.07998 * 120.33859 * 359.97438 * 13 12 11 31 31 H 1.08007 * 120.74301 * 180.02562 * 14 13 12 32 32 H 1.07994 * 120.44900 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.47121 * 62.43613 * 18 17 16 34 34 H 1.08996 * 109.54577 * 302.30629 * 18 17 16 35 35 H 1.09004 * 109.50381 * 183.26420 * 19 18 17 36 36 H 1.08992 * 109.51041 * 63.17293 * 19 18 17 37 37 H 1.08999 * 109.51411 * 61.26219 * 21 20 19 38 38 H 1.09006 * 109.50486 * 181.35262 * 21 20 19 39 39 H 1.09005 * 109.51057 * 57.67457 * 22 17 16 40 40 H 1.08996 * 109.54634 * 297.56813 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2209 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3841 2.2691 1.0935 7 14 2.3368 4.0047 0.1687 8 1 3.6141 3.8166 -0.5652 9 1 1.4271 4.8615 -0.6335 10 1 2.6074 4.6570 1.4750 11 6 2.1974 -1.2688 0.0006 12 6 2.4485 -1.7032 1.4216 13 6 1.5754 -2.5832 2.0294 14 6 1.8115 -2.9796 3.3390 15 6 2.9218 -2.4748 3.9918 16 6 3.7591 -1.5917 3.3181 17 7 4.8780 -1.0763 3.9621 18 6 5.7469 -2.1557 4.4533 19 6 6.9333 -1.5463 5.2049 20 8 7.6270 -0.6430 4.3399 21 6 6.8101 0.4213 3.8445 22 6 5.6226 -0.1677 3.0784 23 7 3.4970 -1.2335 2.0704 24 1 -0.3634 0.0757 1.0248 25 1 -0.3634 0.8498 -0.5780 26 1 -0.3634 -0.9254 -0.4469 27 1 -0.0461 3.0776 1.4131 28 1 3.1497 -1.1387 -0.5134 29 1 1.6082 -2.0286 -0.5130 30 1 0.7172 -2.9588 1.4921 31 1 1.1436 -3.6673 3.8365 32 1 3.1355 -2.7624 5.0105 33 1 6.1124 -2.7405 3.6092 34 1 5.1822 -2.8008 5.1264 35 1 7.6104 -2.3399 5.5208 36 1 6.5714 -1.0067 6.0800 37 1 6.4439 1.0183 4.6797 38 1 7.3983 1.0512 3.1771 39 1 4.9666 0.6377 2.7481 40 1 5.9866 -0.7191 2.2115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237848437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:36 Heat of formation + Delta-G solvation = 36.351403 kcal Electronic energy + Delta-G solvation = -22132.358369 eV Core-core repulsion = 18948.609094 eV Total energy + Delta-G solvation = -3183.749275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39721 -38.80881 -36.03674 -35.04653 -32.24829 -31.49381 -30.96232 -29.93446 -27.05904 -26.24419 -25.64084 -24.10362 -22.37130 -21.97732 -20.43604 -20.29618 -17.38304 -16.65863 -16.26920 -15.73738 -15.62149 -15.19704 -14.91845 -14.78097 -14.63036 -14.19885 -13.68837 -13.46477 -13.21180 -12.70444 -12.56314 -12.27066 -11.86327 -11.52882 -11.40536 -11.27015 -11.07098 -10.87567 -10.68424 -10.63850 -10.38102 -9.98655 -9.95809 -9.85676 -9.43563 -9.07142 -8.81067 -8.53677 -7.68766 -6.80487 -5.73733 -3.16448 1.68991 1.88288 3.38438 3.45390 3.47875 3.63742 3.86057 4.31448 4.54601 4.71309 4.93258 5.03410 5.12544 5.25009 5.29161 5.38082 5.45313 5.51714 5.56619 5.62323 5.67150 5.70482 5.74373 5.78969 6.05252 6.20276 6.27346 6.33386 6.44067 6.60833 6.70472 6.73398 6.92555 7.02397 7.11320 7.35357 7.56228 7.71025 7.84050 8.37201 8.73687 9.22187 9.82559 10.30610 11.31383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.006567 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.555775 B = 4262.881097 C = 5611.973813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.584 5.584 3 C -0.238 4.238 4 H 0.073 0.927 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.188 3.812 12 C 0.158 3.842 13 C -0.198 4.198 14 C -0.060 4.060 15 C -0.210 4.210 16 C 0.305 3.695 17 N -0.476 5.476 18 C 0.024 3.976 19 C 0.065 3.935 20 O -0.388 6.388 21 C 0.060 3.940 22 C 0.032 3.968 23 N -0.494 5.494 24 H 0.028 0.972 25 H 0.049 0.951 26 H -0.001 1.001 27 H 0.252 0.748 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 -10.518 6.217 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.304 5.304 3 C -0.368 4.368 4 H 0.091 0.909 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.060 3.940 12 C 0.016 3.984 13 C -0.220 4.220 14 C -0.086 4.086 15 C -0.233 4.233 16 C 0.073 3.927 17 N -0.195 5.195 18 C -0.103 4.103 19 C -0.012 4.012 20 O -0.306 6.306 21 C -0.017 4.017 22 C -0.095 4.095 23 N -0.209 5.209 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.416 -9.482 6.186 14.107 hybrid contribution -0.554 0.140 0.240 0.620 sum 7.862 -9.342 6.426 13.797 Atomic orbital electron populations 1.20868 0.82077 0.95880 0.99442 1.44220 1.02025 1.00313 1.83822 1.19297 0.98140 0.84551 1.34837 0.90932 1.25084 0.97718 0.98715 0.98267 1.70084 1.17816 1.27014 1.40259 0.86155 0.78768 0.84108 0.77413 1.20132 1.21637 1.21762 1.20034 0.97034 0.88903 0.88009 1.22702 0.87704 0.87938 1.00077 1.21780 1.01901 1.02096 0.96219 1.21261 0.95546 0.97444 0.94329 1.21238 0.97957 1.03373 1.00756 1.19753 0.92511 0.91509 0.88952 1.59402 1.06833 1.16720 1.36540 1.22895 0.94429 0.92918 1.00082 1.22650 0.93000 0.93162 0.92430 1.87967 1.37140 1.39917 1.65593 1.22823 0.91703 0.89084 0.98067 1.22632 0.95305 0.97664 0.93915 1.67466 1.21781 1.24787 1.06861 0.95388 0.93186 0.98232 0.93812 0.92041 0.92454 0.85782 0.85733 0.85950 0.93112 0.89158 0.88293 0.92186 0.92327 0.88016 0.87799 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 9.01 59.84 0.54 4.52 16 2 N -0.58 -14.76 2.91 -182.51 -0.53 -15.29 16 3 C -0.24 -6.60 9.67 -15.06 -0.15 -6.75 16 4 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 5 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 6 N -0.91 -26.83 10.59 55.49 0.59 -26.24 16 7 Si 0.91 22.25 29.57 -169.99 -5.03 17.23 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 C 0.19 3.98 6.01 -5.19 -0.03 3.95 16 12 C 0.16 3.28 6.36 -82.61 -0.53 2.75 16 13 C -0.20 -3.57 9.71 -39.42 -0.38 -3.95 16 14 C -0.06 -0.95 10.17 -39.32 -0.40 -1.35 16 15 C -0.21 -3.45 9.23 -39.22 -0.36 -3.81 16 16 C 0.30 5.71 6.40 -155.00 -0.99 4.72 16 17 N -0.48 -7.85 4.75 -172.90 -0.82 -8.67 16 18 C 0.02 0.30 5.40 -3.71 -0.02 0.28 16 19 C 0.06 0.72 7.01 37.20 0.26 0.98 16 20 O -0.39 -5.30 10.83 -35.23 -0.38 -5.68 16 21 C 0.06 0.82 7.01 37.21 0.26 1.08 16 22 C 0.03 0.53 4.82 -3.71 -0.02 0.51 16 23 N -0.49 -10.53 8.62 -8.67 -0.07 -10.60 16 24 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 25 H 0.05 1.32 7.19 -51.92 -0.37 0.94 16 26 H 0.00 -0.02 7.84 -51.93 -0.41 -0.42 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 29 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 30 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.12 1.67 7.19 -52.49 -0.38 1.29 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.98 6.83 -51.93 -0.35 0.62 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 2.03 7.86 -51.93 -0.41 1.62 16 40 H 0.06 1.01 8.03 -51.93 -0.42 0.59 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -32.18 325.63 -9.29 -41.48 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.05 Total: 0.02 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.91 Total: 2.86 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.84 Total: -60.80 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.38 Total: -5.68 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.18 -9.29 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237848437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.828 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds